RNA–Protein interactions for RNA: ENST00000496347.1

HDAC4-213, Transcript of histone deacetylase 4, humanhuman

TSL 3

Gene HDAC4, Length 995 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-213ENST00000496347 ZNF623O75123 536 aa17.5■□□□□ 0.39
HDAC4-213ENST00000496347 HYAL1Q12794 435 aa17.5■□□□□ 0.39
HDAC4-213ENST00000496347 PDE12Q6L8Q7 609 aaKnown RBP17.5■□□□□ 0.39
HDAC4-213ENST00000496347 IFNLR1Q8IU57 520 aaPredicted RBP17.5■□□□□ 0.39
HDAC4-213ENST00000496347 ZNF558Q96NG5 402 aa17.5■□□□□ 0.39
HDAC4-213ENST00000496347 POLR3CQ9BUI4 534 aaPredicted RBP17.5■□□□□ 0.39
HDAC4-213ENST00000496347 NFKBIZQ9BYH8 718 aa17.5■□□□□ 0.39
HDAC4-213ENST00000496347 CLDND1Q9NY35 253 aa17.5■□□□□ 0.39
HDAC4-213ENST00000496347 DBR1Q9UK59 544 aaKnown RBP17.5■□□□□ 0.39
HDAC4-213ENST00000496347 ERLIN2O94905 339 aa17.49■□□□□ 0.39
HDAC4-213ENST00000496347 CSPG5O95196 566 aa17.49■□□□□ 0.39
HDAC4-213ENST00000496347 SRGAP2CP0DJJ0 459 aa17.49■□□□□ 0.39
HDAC4-213ENST00000496347 SPATA31C1P0DKV0 1188 aa17.49■□□□□ 0.39
HDAC4-213ENST00000496347 MUTP22033 750 aa17.49■□□□□ 0.39
HDAC4-213ENST00000496347 RPA1P27694 616 aa17.49■□□□□ 0.39
HDAC4-213ENST00000496347 FXR2P51116 673 aaKnown RBP eCLIP17.49■□□□□ 0.39
HDAC4-213ENST00000496347 PTENP60484 403 aa17.49■□□□□ 0.39
HDAC4-213ENST00000496347 PLCB3Q01970 1234 aa17.49■□□□□ 0.39
HDAC4-213ENST00000496347 POU5F1BQ06416 359 aa17.49■□□□□ 0.39
HDAC4-213ENST00000496347 PTCRAQ6ISU1 281 aaPredicted RBP17.49■□□□□ 0.39
HDAC4-213ENST00000496347 GLB1LQ6UWU2 654 aa17.49■□□□□ 0.39
HDAC4-213ENST00000496347 LRRC55Q6ZSA7 311 aa17.49■□□□□ 0.39
HDAC4-213ENST00000496347 MCPH1Q8NEM0 835 aa17.49■□□□□ 0.39
HDAC4-213ENST00000496347 HELQQ8TDG4 1101 aa17.49■□□□□ 0.39
HDAC4-213ENST00000496347 CCDC51Q96ER9 411 aa17.49■□□□□ 0.39
HDAC4-213ENST00000496347 TMX3Q96JJ7 454 aa17.49■□□□□ 0.39
HDAC4-213ENST00000496347 MINDY3Q9H8M7 445 aa17.49■□□□□ 0.39
HDAC4-213ENST00000496347 CNTNAP2Q9UHC6 1331 aa17.48■□□□□ 0.39
HDAC4-213ENST00000496347 H3BQ06 376 aaPredicted RBP17.48■□□□□ 0.39
HDAC4-213ENST00000496347 LAD1O00515 517 aa17.48■□□□□ 0.39
HDAC4-213ENST00000496347 TBX10O75333 385 aa17.48■□□□□ 0.39
HDAC4-213ENST00000496347 IRS1P35568 1242 aa17.48■□□□□ 0.39
HDAC4-213ENST00000496347 ARL2P36404 184 aa17.48■□□□□ 0.39
HDAC4-213ENST00000496347 TECP42680 631 aa17.48■□□□□ 0.39
HDAC4-213ENST00000496347 ZNF174Q15697 407 aa17.48■□□□□ 0.39
HDAC4-213ENST00000496347 KCNT2Q6UVM3 1135 aa17.48■□□□□ 0.39
HDAC4-213ENST00000496347 CATSPER3Q86XQ3 398 aa17.48■□□□□ 0.39
HDAC4-213ENST00000496347 EFHBQ8N7U6 833 aa17.48■□□□□ 0.39
HDAC4-213ENST00000496347 GADD45GIP1Q8TAE8 222 aaPredicted RBP17.48■□□□□ 0.39
HDAC4-213ENST00000496347 PIGOQ8TEQ8 1089 aa17.48■□□□□ 0.39
HDAC4-213ENST00000496347 MRPS27Q92552 414 aaKnown RBP17.48■□□□□ 0.39
HDAC4-213ENST00000496347 PGBD4Q96DM1 585 aa17.48■□□□□ 0.39
HDAC4-213ENST00000496347 NACC1Q96RE7 527 aa17.48■□□□□ 0.39
HDAC4-213ENST00000496347 RAB34Q9BZG1 259 aa17.48■□□□□ 0.39
HDAC4-213ENST00000496347 PCDHB2Q9Y5E7 798 aa17.48■□□□□ 0.39
HDAC4-213ENST00000496347 GRXCR2A6NFK2 248 aa17.47■□□□□ 0.39
HDAC4-213ENST00000496347 FSCN2O14926 492 aa17.47■□□□□ 0.39
HDAC4-213ENST00000496347 USO1O60763 962 aaKnown RBP17.47■□□□□ 0.39
HDAC4-213ENST00000496347 MED24O75448 989 aa17.47■□□□□ 0.39
HDAC4-213ENST00000496347 CD2BP2O95400 341 aaKnown RBP17.47■□□□□ 0.39
HDAC4-213ENST00000496347 AXLP30530 894 aa17.47■□□□□ 0.39
HDAC4-213ENST00000496347 LTBRP36941 435 aa17.47■□□□□ 0.39
HDAC4-213ENST00000496347 CAPSQ13938 189 aa17.47■□□□□ 0.39
HDAC4-213ENST00000496347 NOTUMQ6P988 496 aa17.47■□□□□ 0.39
HDAC4-213ENST00000496347 POTEGQ6S5H5 508 aa17.47■□□□□ 0.39
HDAC4-213ENST00000496347 EP400NLQ6ZTU2 488 aa17.47■□□□□ 0.39
HDAC4-213ENST00000496347 ASAP3Q8TDY4 903 aa17.47■□□□□ 0.39
HDAC4-213ENST00000496347 CDCA3Q99618 268 aaPredicted RBP17.47■□□□□ 0.39
HDAC4-213ENST00000496347 POLR3FQ9H1D9 316 aaPredicted RBP17.47■□□□□ 0.39
HDAC4-213ENST00000496347 SPG21Q9NZD8 308 aa17.47■□□□□ 0.39
HDAC4-213ENST00000496347 PUF60Q9UHX1 559 aaKnown RBP17.47■□□□□ 0.39
HDAC4-213ENST00000496347 STK24Q9Y6E0 443 aa17.47■□□□□ 0.39
HDAC4-213ENST00000496347 TSPAN1O60635 241 aa17.46■□□□□ 0.39
HDAC4-213ENST00000496347 GLRA2P23416 452 aa17.46■□□□□ 0.39
HDAC4-213ENST00000496347 HOXA11P31270 313 aaPredicted RBP17.46■□□□□ 0.39
HDAC4-213ENST00000496347 KRT17Q04695 432 aa17.46■□□□□ 0.39
HDAC4-213ENST00000496347 MBTD1Q05BQ5 628 aa17.46■□□□□ 0.39
HDAC4-213ENST00000496347 SMAD4Q13485 552 aaKnown RBP17.46■□□□□ 0.39
HDAC4-213ENST00000496347 ADGRD2Q7Z7M1 963 aa17.46■□□□□ 0.39
HDAC4-213ENST00000496347 SLC39A11Q8N1S5 342 aa17.46■□□□□ 0.39
HDAC4-213ENST00000496347 TDRD15B5MCY1 1934 aaKnown RBP17.45■□□□□ 0.38
HDAC4-213ENST00000496347 ZMYM2Q9UBW7 1377 aa17.45■□□□□ 0.38
HDAC4-213ENST00000496347 INO80B-WBP1J3KQ70 363 aa17.45■□□□□ 0.38
HDAC4-213ENST00000496347 IL9P15248 144 aa17.45■□□□□ 0.38
HDAC4-213ENST00000496347 PRPHP41219 470 aa17.45■□□□□ 0.38
HDAC4-213ENST00000496347 NRIP1P48552 1158 aa17.45■□□□□ 0.38
HDAC4-213ENST00000496347 ALDH7A1P49419 539 aaKnown RBP17.45■□□□□ 0.38
HDAC4-213ENST00000496347 NDUFV1P49821 464 aa17.45■□□□□ 0.38
HDAC4-213ENST00000496347 TOB1P50616 345 aaPredicted RBP17.45■□□□□ 0.38
HDAC4-213ENST00000496347 NCBP1Q09161 790 aaKnown RBP17.45■□□□□ 0.38
HDAC4-213ENST00000496347 NBR1Q14596 966 aa17.45■□□□□ 0.38
HDAC4-213ENST00000496347 RILPL1Q5EBL4 403 aa17.45■□□□□ 0.38
HDAC4-213ENST00000496347 NOMO2Q5JPE7 1267 aa17.45■□□□□ 0.38
HDAC4-213ENST00000496347 CDCA2Q69YH5 1023 aaPredicted RBP17.45■□□□□ 0.38
HDAC4-213ENST00000496347 MRPL10Q7Z7H8 261 aaKnown RBP17.45■□□□□ 0.38
HDAC4-213ENST00000496347 C4orf32Q8N8J7 132 aa17.45■□□□□ 0.38
HDAC4-213ENST00000496347 IGSF22Q8N9C0 903 aa17.45■□□□□ 0.38
HDAC4-213ENST00000496347 CNNM3Q8NE01 707 aa17.45■□□□□ 0.38
HDAC4-213ENST00000496347 URGCPQ8TCY9 931 aa17.45■□□□□ 0.38
HDAC4-213ENST00000496347 LPPQ93052 612 aa17.45■□□□□ 0.38
HDAC4-213ENST00000496347 TCF25Q9BQ70 676 aa17.45■□□□□ 0.38
HDAC4-213ENST00000496347 NGRNQ9NPE2 291 aaKnown RBP17.45■□□□□ 0.38
HDAC4-213ENST00000496347 ENTPD7Q9NQZ7 604 aa17.45■□□□□ 0.38
HDAC4-213ENST00000496347 TBC1D13Q9NVG8 400 aa17.45■□□□□ 0.38
HDAC4-213ENST00000496347 PRKAG3Q9UGI9 489 aa17.45■□□□□ 0.38
HDAC4-213ENST00000496347 ARHGEF35A5YM69 484 aa17.44■□□□□ 0.38
HDAC4-213ENST00000496347 ZC3H11AO75152 810 aaKnown RBP eCLIP17.44■□□□□ 0.38
HDAC4-213ENST00000496347 SRGAP2BP0DMP2 458 aa17.44■□□□□ 0.38
HDAC4-213ENST00000496347 NCLP19338 710 aaKnown RBP17.44■□□□□ 0.38
HDAC4-213ENST00000496347 GTF2F1P35269 517 aaKnown RBP eCLIP17.44■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms