RNA–Protein interactions for RNA: ENST00000496047.5

USP39-219, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 554 nt, Biotype processed transcript, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-219ENST00000496047 CAGE1Q8TC20 777 aa7.56□□□□□ -1.2
USP39-219ENST00000496047 ANKRD7Q92527 254 aa7.56□□□□□ -1.2
USP39-219ENST00000496047 EEF2KMTQ96G04 330 aa7.56□□□□□ -1.2
USP39-219ENST00000496047 INPP4AQ96PE3 977 aaPredicted RBP7.56□□□□□ -1.2
USP39-219ENST00000496047 MOV10L1Q9BXT6 1211 aaKnown RBP7.56□□□□□ -1.2
USP39-219ENST00000496047 JPH1Q9HDC5 661 aaPredicted RBP7.56□□□□□ -1.2
USP39-219ENST00000496047 NMRK2Q9NPI5 230 aa7.56□□□□□ -1.2
USP39-219ENST00000496047 AGPAT5Q9NUQ2 364 aa7.56□□□□□ -1.2
USP39-219ENST00000496047 CYP39A1Q9NYL5 469 aa7.56□□□□□ -1.2
USP39-219ENST00000496047 GCNT4Q9P109 453 aa7.56□□□□□ -1.2
USP39-219ENST00000496047 SLC9A2Q9UBY0 812 aa7.56□□□□□ -1.2
USP39-219ENST00000496047 CDC23Q9UJX2 597 aa7.56□□□□□ -1.2
USP39-219ENST00000496047 FBXL5Q9UKA1 691 aa7.56□□□□□ -1.2
USP39-219ENST00000496047 ZNF215Q9UL58 517 aaPredicted RBP7.56□□□□□ -1.2
USP39-219ENST00000496047 ZNF214Q9UL59 606 aaPredicted RBP7.56□□□□□ -1.2
USP39-219ENST00000496047 ADAMTS5Q9UNA0 930 aa7.56□□□□□ -1.2
USP39-219ENST00000496047 PPME1Q9Y570 386 aa7.56□□□□□ -1.2
USP39-219ENST00000496047 SNCAIPQ9Y6H5 919 aa7.56□□□□□ -1.2
USP39-219ENST00000496047 RALGAPA2Q2PPJ7 1873 aa7.55□□□□□ -1.2
USP39-219ENST00000496047 LOC102724159A0A0B4J2E5 919 aa7.55□□□□□ -1.2
USP39-219ENST00000496047 CTAGE15A4D2H0 777 aa7.55□□□□□ -1.2
USP39-219ENST00000496047 BACH1O14867 736 aa7.55□□□□□ -1.2
USP39-219ENST00000496047 KIAA0391O15091 583 aaKnown RBP7.55□□□□□ -1.2
USP39-219ENST00000496047 MAPK13O15264 365 aa7.55□□□□□ -1.2
USP39-219ENST00000496047 P4HA2O15460 535 aa7.55□□□□□ -1.2
USP39-219ENST00000496047 RNF40O75150 1001 aa7.55□□□□□ -1.2
USP39-219ENST00000496047 ERLIN1O75477 346 aa7.55□□□□□ -1.2
USP39-219ENST00000496047 USP2O75604 605 aaPredicted RBP7.55□□□□□ -1.2
USP39-219ENST00000496047 DGAT1O75907 488 aa7.55□□□□□ -1.2
USP39-219ENST00000496047 GFPT2O94808 682 aa7.55□□□□□ -1.2
USP39-219ENST00000496047 DDNO94850 711 aaPredicted RBP7.55□□□□□ -1.2
USP39-219ENST00000496047 CTAGE8P0CG41 777 aa7.55□□□□□ -1.2
USP39-219ENST00000496047 FERP16591 822 aa7.55□□□□□ -1.2
USP39-219ENST00000496047 NMT1P30419 496 aaKnown RBP7.55□□□□□ -1.2
USP39-219ENST00000496047 CASP5P51878 434 aa7.55□□□□□ -1.2
USP39-219ENST00000496047 NAP1L1P55209 391 aaKnown RBP7.55□□□□□ -1.2
USP39-219ENST00000496047 MRPS9P82933 396 aaKnown RBP7.55□□□□□ -1.2
USP39-219ENST00000496047 MYL7Q01449 175 aa7.55□□□□□ -1.2
USP39-219ENST00000496047 NCBP1Q09161 790 aaKnown RBP7.55□□□□□ -1.2
USP39-219ENST00000496047 ITGB3BPQ13352 177 aaPredicted RBP7.55□□□□□ -1.2
USP39-219ENST00000496047 PPIL2Q13356 520 aa7.55□□□□□ -1.2
USP39-219ENST00000496047 NEDD9Q14511 834 aa7.55□□□□□ -1.2
USP39-219ENST00000496047 TMEM132BQ14DG7 1078 aa7.55□□□□□ -1.2
USP39-219ENST00000496047 PWP2Q15269 919 aaKnown RBP7.55□□□□□ -1.2
USP39-219ENST00000496047 TUSC1Q2TAM9 212 aa7.55□□□□□ -1.2
USP39-219ENST00000496047 FAM102BQ5T8I3 360 aa7.55□□□□□ -1.2
USP39-219ENST00000496047 PRPF38BQ5VTL8 546 aaKnown RBP7.55□□□□□ -1.2
USP39-219ENST00000496047 TRAF7Q6Q0C0 670 aa7.55□□□□□ -1.2
USP39-219ENST00000496047 ZNF720Q7Z2F6 126 aa7.55□□□□□ -1.2
USP39-219ENST00000496047 CTAGE6Q86UF2 777 aa7.55□□□□□ -1.2
USP39-219ENST00000496047 VSIG10LQ86VR7 867 aa7.55□□□□□ -1.2
USP39-219ENST00000496047 NCAPG2Q86XI2 1143 aa7.55□□□□□ -1.2
USP39-219ENST00000496047 RIOX2Q8IUF8 465 aa7.55□□□□□ -1.2
USP39-219ENST00000496047 CTAGE4Q8IX94 777 aa7.55□□□□□ -1.2
USP39-219ENST00000496047 C12orf56Q8IXR9 622 aa7.55□□□□□ -1.2
USP39-219ENST00000496047 GLIS3Q8NEA6 775 aa7.55□□□□□ -1.2
USP39-219ENST00000496047 SMCR8Q8TEV9 937 aaPredicted RBP7.55□□□□□ -1.2
USP39-219ENST00000496047 SPIRE2Q8WWL2 714 aa7.55□□□□□ -1.2
USP39-219ENST00000496047 LRCH3Q96II8 777 aa7.55□□□□□ -1.2
USP39-219ENST00000496047 CEP170P1Q96L14 293 aa7.55□□□□□ -1.2
USP39-219ENST00000496047 FAM81BQ96LP2 452 aa7.55□□□□□ -1.2
USP39-219ENST00000496047 CHP1Q99653 195 aa7.55□□□□□ -1.2
USP39-219ENST00000496047 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP7.55□□□□□ -1.2
USP39-219ENST00000496047 CARD6Q9BX69 1037 aa7.55□□□□□ -1.2
USP39-219ENST00000496047 ST6GALNAC4Q9H4F1 302 aa7.55□□□□□ -1.2
USP39-219ENST00000496047 ATP6V0A4Q9HBG4 840 aa7.55□□□□□ -1.2
USP39-219ENST00000496047 NLRC4Q9NPP4 1024 aa7.55□□□□□ -1.2
USP39-219ENST00000496047 A1CFQ9NQ94 594 aaKnown RBP7.55□□□□□ -1.2
USP39-219ENST00000496047 AGPAT3Q9NRZ7 376 aa7.55□□□□□ -1.2
USP39-219ENST00000496047 IGSF9BQ9UPX0 1349 aa7.54□□□□□ -1.2
USP39-219ENST00000496047 PDE4DIPQ5VU43 2346 aa7.54□□□□□ -1.2
USP39-219ENST00000496047 UNCXA6NJT0 531 aa7.54□□□□□ -1.2
USP39-219ENST00000496047 CCDC169A6NNP5 214 aa7.54□□□□□ -1.2
USP39-219ENST00000496047 C3orf80F5H4A9 247 aa7.54□□□□□ -1.2
USP39-219ENST00000496047 CLIC2O15247 247 aa7.54□□□□□ -1.2
USP39-219ENST00000496047 DHX15O43143 795 aaKnown RBP7.54□□□□□ -1.2
USP39-219ENST00000496047 EIF3JO75822 258 aaKnown RBP7.54□□□□□ -1.2
USP39-219ENST00000496047 ICAM3P32942 547 aa7.54□□□□□ -1.2
USP39-219ENST00000496047 EIF4A3P38919 411 aaKnown RBP7.54□□□□□ -1.2
USP39-219ENST00000496047 STAT1P42224 750 aa7.54□□□□□ -1.2
USP39-219ENST00000496047 MAGEA1P43355 309 aa7.54□□□□□ -1.2
USP39-219ENST00000496047 GCGRP47871 477 aa7.54□□□□□ -1.2
USP39-219ENST00000496047 KLK7P49862 253 aa7.54□□□□□ -1.2
USP39-219ENST00000496047 CYP2J2P51589 502 aa7.54□□□□□ -1.2
USP39-219ENST00000496047 ALDH5A1P51649 535 aaPredicted RBP7.54□□□□□ -1.2
USP39-219ENST00000496047 POLGP54098 1239 aaPredicted RBP7.54□□□□□ -1.2
USP39-219ENST00000496047 NCKAP1LP55160 1127 aa7.54□□□□□ -1.2
USP39-219ENST00000496047 CHMP4BP1P59074 171 aa7.54□□□□□ -1.2
USP39-219ENST00000496047 BFSP1Q12934 665 aa7.54□□□□□ -1.2
USP39-219ENST00000496047 DGKZQ13574 1117 aa7.54□□□□□ -1.2
USP39-219ENST00000496047 ELF2Q15723 593 aa7.54□□□□□ -1.2
USP39-219ENST00000496047 XKR3Q5GH77 459 aa7.54□□□□□ -1.2
USP39-219ENST00000496047 TEX35Q5T0J7 233 aa7.54□□□□□ -1.2
USP39-219ENST00000496047 CCDC181Q5TID7 509 aa7.54□□□□□ -1.2
USP39-219ENST00000496047 PRAMEF18Q5VWM3 479 aa7.54□□□□□ -1.2
USP39-219ENST00000496047 C9orf131Q5VYM1 1079 aa7.54□□□□□ -1.2
USP39-219ENST00000496047 WDR59Q6PJI9 974 aa7.54□□□□□ -1.2
USP39-219ENST00000496047 TMCO3Q6UWJ1 677 aa7.54□□□□□ -1.2
USP39-219ENST00000496047 LBX2Q6XYB7 198 aa7.54□□□□□ -1.2
USP39-219ENST00000496047 SRGAP1Q7Z6B7 1085 aa7.54□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms