RNA–Protein interactions for RNA: ENST00000495090.6

SYNE1-230, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 1,907 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-230ENST00000495090 CPVLQ9H3G5 476 aa10.43□□□□□ -0.74
SYNE1-230ENST00000495090 RNPEPL1Q9HAU8 725 aa10.43□□□□□ -0.74
SYNE1-230ENST00000495090 ETAA1Q9NY74 926 aa10.43□□□□□ -0.74
SYNE1-230ENST00000495090 KLHL14Q9P2G3 628 aa10.43□□□□□ -0.74
SYNE1-230ENST00000495090 AJAP1Q9UKB5 411 aaPredicted RBP10.43□□□□□ -0.74
SYNE1-230ENST00000495090 ZNF652Q9Y2D9 606 aa10.43□□□□□ -0.74
SYNE1-230ENST00000495090 FRMPD4Q14CM0 1322 aa10.43□□□□□ -0.74
SYNE1-230ENST00000495090 IGSF9BQ9UPX0 1349 aa10.43□□□□□ -0.74
SYNE1-230ENST00000495090 WTIPA6NIX2 430 aaPredicted RBP10.43□□□□□ -0.74
SYNE1-230ENST00000495090 SMIM23A6NLE4 172 aa10.43□□□□□ -0.74
SYNE1-230ENST00000495090 E9PMD0 336 aa10.43□□□□□ -0.74
SYNE1-230ENST00000495090 AKAP3O75969 853 aa10.43□□□□□ -0.74
SYNE1-230ENST00000495090 NPTXRO95502 500 aa10.43□□□□□ -0.74
SYNE1-230ENST00000495090 KRT13P13646 458 aa10.43□□□□□ -0.74
SYNE1-230ENST00000495090 FGFR4P22455 802 aa10.43□□□□□ -0.74
SYNE1-230ENST00000495090 RFX1P22670 979 aa10.43□□□□□ -0.74
SYNE1-230ENST00000495090 BIRC2Q13490 618 aa10.43□□□□□ -0.74
SYNE1-230ENST00000495090 MFN1Q8IWA4 741 aa10.43□□□□□ -0.74
SYNE1-230ENST00000495090 LMNTD2Q8IXW0 634 aa10.43□□□□□ -0.74
SYNE1-230ENST00000495090 ENDOVQ8N8Q3 282 aaKnown RBP10.43□□□□□ -0.74
SYNE1-230ENST00000495090 C12orf50Q8NA57 414 aaPredicted RBP10.43□□□□□ -0.74
SYNE1-230ENST00000495090 ALG3Q92685 438 aa10.43□□□□□ -0.74
SYNE1-230ENST00000495090 INPP5DQ92835 1189 aa10.43□□□□□ -0.74
SYNE1-230ENST00000495090 SLCO2A1Q92959 643 aa10.43□□□□□ -0.74
SYNE1-230ENST00000495090 ARHGEF2Q92974 986 aaKnown RBP10.43□□□□□ -0.74
SYNE1-230ENST00000495090 C18orf8Q96DM3 657 aa10.43□□□□□ -0.74
SYNE1-230ENST00000495090 MAGEB18Q96M61 343 aa10.43□□□□□ -0.74
SYNE1-230ENST00000495090 OSBPL1AQ9BXW6 950 aa10.43□□□□□ -0.74
SYNE1-230ENST00000495090 DHX36Q9H2U1 1008 aaKnown RBP10.43□□□□□ -0.74
SYNE1-230ENST00000495090 KIAA1024Q9UPX6 916 aa10.43□□□□□ -0.74
SYNE1-230ENST00000495090 ACTL7BQ9Y614 415 aa10.43□□□□□ -0.74
SYNE1-230ENST00000495090 PLIN4Q96Q06 1357 aa10.42□□□□□ -0.74
SYNE1-230ENST00000495090 ROBO1Q9Y6N7 1651 aa10.42□□□□□ -0.74
SYNE1-230ENST00000495090 PASKQ96RG2 1323 aa10.42□□□□□ -0.74
SYNE1-230ENST00000495090 EME2A4GXA9 379 aaPredicted RBP10.42□□□□□ -0.74
SYNE1-230ENST00000495090 A8MUI8 341 aa10.42□□□□□ -0.74
SYNE1-230ENST00000495090 NR3C1P04150 777 aa10.42□□□□□ -0.74
SYNE1-230ENST00000495090 ATP4AP20648 1035 aa10.42□□□□□ -0.74
SYNE1-230ENST00000495090 CALB2P22676 271 aa10.42□□□□□ -0.74
SYNE1-230ENST00000495090 PEX19P40855 299 aa10.42□□□□□ -0.74
SYNE1-230ENST00000495090 MTFR1Q15390 333 aa10.42□□□□□ -0.74
SYNE1-230ENST00000495090 ARSHQ5FYA8 562 aa10.42□□□□□ -0.74
SYNE1-230ENST00000495090 DCAF17Q5H9S7 520 aaPredicted RBP10.42□□□□□ -0.74
SYNE1-230ENST00000495090 CCDC137Q6PK04 289 aaKnown RBP10.42□□□□□ -0.74
SYNE1-230ENST00000495090 CLEC4GQ6UXB4 293 aa10.42□□□□□ -0.74
SYNE1-230ENST00000495090 BICDL1Q6ZP65 573 aa10.42□□□□□ -0.74
SYNE1-230ENST00000495090 GLYCTKQ8IVS8 523 aa10.42□□□□□ -0.74
SYNE1-230ENST00000495090 KIF2BQ8N4N8 673 aa10.42□□□□□ -0.74
SYNE1-230ENST00000495090 SLC44A5Q8NCS7 719 aa10.42□□□□□ -0.74
SYNE1-230ENST00000495090 SH3RF3Q8TEJ3 882 aaPredicted RBP10.42□□□□□ -0.74
SYNE1-230ENST00000495090 ZFAND2BQ8WV99 257 aa10.42□□□□□ -0.74
SYNE1-230ENST00000495090 C7orf43Q8WVR3 580 aa10.42□□□□□ -0.74
SYNE1-230ENST00000495090 BORCS6Q96GS4 357 aa10.42□□□□□ -0.74
SYNE1-230ENST00000495090 ZSWIM1Q9BR11 485 aa10.42□□□□□ -0.74
SYNE1-230ENST00000495090 MKNK1Q9BUB5 465 aa10.42□□□□□ -0.74
SYNE1-230ENST00000495090 WHRNQ9P202 907 aa10.42□□□□□ -0.74
SYNE1-230ENST00000495090 MTMR7Q9Y216 660 aa10.42□□□□□ -0.74
SYNE1-230ENST00000495090 STK38LQ9Y2H1 464 aa10.42□□□□□ -0.74
SYNE1-230ENST00000495090 STK24Q9Y6E0 443 aa10.42□□□□□ -0.74
SYNE1-230ENST00000495090 ASTN1O14525 1302 aa10.41□□□□□ -0.74
SYNE1-230ENST00000495090 ADGRA3Q8IWK6 1321 aa10.41□□□□□ -0.74
SYNE1-230ENST00000495090 RGL2O15211 777 aa10.41□□□□□ -0.74
SYNE1-230ENST00000495090 MTA2O94776 668 aa10.41□□□□□ -0.74
SYNE1-230ENST00000495090 KRT18P05783 430 aaKnown RBP10.41□□□□□ -0.74
SYNE1-230ENST00000495090 SNHG28P0DPA3 235 aa10.41□□□□□ -0.74
SYNE1-230ENST00000495090 ACADSP16219 412 aa10.41□□□□□ -0.74
SYNE1-230ENST00000495090 ATP6V1C1P21283 382 aa10.41□□□□□ -0.74
SYNE1-230ENST00000495090 KLRK1P26718 216 aa10.41□□□□□ -0.74
SYNE1-230ENST00000495090 RXRBP28702 533 aa10.41□□□□□ -0.74
SYNE1-230ENST00000495090 HOXD13P35453 343 aa10.41□□□□□ -0.74
SYNE1-230ENST00000495090 CRKLP46109 303 aaKnown RBP10.41□□□□□ -0.74
SYNE1-230ENST00000495090 SLCO1A2P46721 670 aa10.41□□□□□ -0.74
SYNE1-230ENST00000495090 TNNI2P48788 182 aa10.41□□□□□ -0.74
SYNE1-230ENST00000495090 CDK8P49336 464 aa10.41□□□□□ -0.74
SYNE1-230ENST00000495090 CASP5P51878 434 aa10.41□□□□□ -0.74
SYNE1-230ENST00000495090 GIT2Q14161 759 aa10.41□□□□□ -0.74
SYNE1-230ENST00000495090 RRP1BQ14684 758 aaKnown RBP10.41□□□□□ -0.74
SYNE1-230ENST00000495090 SEL1L2Q5TEA6 688 aa10.41□□□□□ -0.74
SYNE1-230ENST00000495090 SLC30A9Q6PML9 568 aa10.41□□□□□ -0.74
SYNE1-230ENST00000495090 PPP1R21Q6ZMI0 780 aa10.41□□□□□ -0.74
SYNE1-230ENST00000495090 ARHGEF18Q6ZSZ5 1173 aa10.41□□□□□ -0.74
SYNE1-230ENST00000495090 APBB1IPQ7Z5R6 666 aaPredicted RBP10.41□□□□□ -0.74
SYNE1-230ENST00000495090 SPDYE1Q8NFV5 336 aaPredicted RBP10.41□□□□□ -0.74
SYNE1-230ENST00000495090 WDR66Q8TBY9 1149 aa10.41□□□□□ -0.74
SYNE1-230ENST00000495090 STK32AQ8WU08 396 aa10.41□□□□□ -0.74
SYNE1-230ENST00000495090 VTI1AQ96AJ9 217 aa10.41□□□□□ -0.74
SYNE1-230ENST00000495090 CCDC113Q9H0I3 377 aa10.41□□□□□ -0.74
SYNE1-230ENST00000495090 CYP39A1Q9NYL5 469 aa10.41□□□□□ -0.74
SYNE1-230ENST00000495090 CPSF2Q9P2I0 782 aaKnown RBP10.41□□□□□ -0.74
SYNE1-230ENST00000495090 LGALS13Q9UHV8 139 aa10.41□□□□□ -0.74
SYNE1-230ENST00000495090 DBR1Q9UK59 544 aaKnown RBP10.41□□□□□ -0.74
SYNE1-230ENST00000495090 PNMA3Q9UL41 463 aa10.41□□□□□ -0.74
SYNE1-230ENST00000495090 MTUS1Q9ULD2 1270 aa10.41□□□□□ -0.74
SYNE1-230ENST00000495090 STRCP1A6NGW2 1772 aa10.41□□□□□ -0.74
SYNE1-230ENST00000495090 IRS2Q9Y4H2 1338 aa10.41□□□□□ -0.74
SYNE1-230ENST00000495090 PNMA6FA0A0J9YX94 578 aa10.41□□□□□ -0.74
SYNE1-230ENST00000495090 NPHP3-ACAD11A0A0J9YXS1 232 aa10.41□□□□□ -0.74
SYNE1-230ENST00000495090 POTEB3A0JP26 581 aa10.41□□□□□ -0.74
SYNE1-230ENST00000495090 POTECB2RU33 542 aa10.41□□□□□ -0.74
SYNE1-230ENST00000495090 MARCH6O60337 910 aa10.41□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms