RNA–Protein interactions for RNA: ENST00000494090.6

COL27A1-207, Transcript of collagen type XXVII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL27A1, Length 5,329 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL27A1-207ENST00000494090 ZNF564Q8TBZ8 553 aaPredicted RBP20.43■□□□□ 0.86
COL27A1-207ENST00000494090 SCG3Q8WXD2 468 aaKnown RBP20.43■□□□□ 0.86
COL27A1-207ENST00000494090 SCOCQ9UIL1 159 aa20.43■□□□□ 0.86
COL27A1-207ENST00000494090 ZHX2Q9Y6X8 837 aa20.43■□□□□ 0.86
COL27A1-207ENST00000494090 POTEFA5A3E0 1075 aa20.43■□□□□ 0.86
COL27A1-207ENST00000494090 POTEIP0CG38 1075 aa20.43■□□□□ 0.86
COL27A1-207ENST00000494090 C1orf228Q6PIY5 440 aa20.43■□□□□ 0.86
COL27A1-207ENST00000494090 POTEGQ6S5H5 508 aa20.43■□□□□ 0.86
COL27A1-207ENST00000494090 POTEEQ6S8J3 1075 aa20.43■□□□□ 0.86
COL27A1-207ENST00000494090 WDR24Q96S15 920 aa20.43■□□□□ 0.86
COL27A1-207ENST00000494090 SUGT1Q9Y2Z0 365 aa20.43■□□□□ 0.86
COL27A1-207ENST00000494090 GMNCA6NCL1 334 aa20.42■□□□□ 0.86
COL27A1-207ENST00000494090 RASA4BC9J798 803 aa20.42■□□□□ 0.86
COL27A1-207ENST00000494090 RASA4O43374 803 aa20.42■□□□□ 0.86
COL27A1-207ENST00000494090 TADA3O75528 432 aa20.42■□□□□ 0.86
COL27A1-207ENST00000494090 ATP5HO75947 161 aa20.42■□□□□ 0.86
COL27A1-207ENST00000494090 CACNB3P54284 484 aa20.42■□□□□ 0.86
COL27A1-207ENST00000494090 MAML1Q92585 1016 aa20.42■□□□□ 0.86
COL27A1-207ENST00000494090 FAM84BQ96KN1 310 aaPredicted RBP20.42■□□□□ 0.86
COL27A1-207ENST00000494090 WRNIP1Q96S55 665 aa20.42■□□□□ 0.86
COL27A1-207ENST00000494090 MTRQ99707 1265 aa20.42■□□□□ 0.86
COL27A1-207ENST00000494090 CCSER1Q9C0I3 900 aa20.42■□□□□ 0.86
COL27A1-207ENST00000494090 RNF146Q9NTX7 359 aa20.42■□□□□ 0.86
COL27A1-207ENST00000494090 PACSIN2Q9UNF0 486 aaPredicted RBP20.42■□□□□ 0.86
COL27A1-207ENST00000494090 PDE1CQ14123 709 aaPredicted RBP20.42■□□□□ 0.86
COL27A1-207ENST00000494090 PDIA5Q14554 519 aa20.42■□□□□ 0.86
COL27A1-207ENST00000494090 TRIM67Q6ZTA4 783 aa20.42■□□□□ 0.86
COL27A1-207ENST00000494090 FRMD5Q7Z6J6 570 aa20.42■□□□□ 0.86
COL27A1-207ENST00000494090 GIPC2Q8TF65 315 aa20.42■□□□□ 0.86
COL27A1-207ENST00000494090 PHF20Q9BVI0 1012 aa20.42■□□□□ 0.86
COL27A1-207ENST00000494090 TRIM55Q9BYV6 548 aa20.42■□□□□ 0.86
COL27A1-207ENST00000494090 TSPOAP1O95153 1857 aa20.42■□□□□ 0.86
COL27A1-207ENST00000494090 ZNF568Q3ZCX4 644 aa20.42■□□□□ 0.86
COL27A1-207ENST00000494090 SRBD1Q8N5C6 995 aaKnown RBP20.42■□□□□ 0.86
COL27A1-207ENST00000494090 URGCPQ8TCY9 931 aa20.42■□□□□ 0.86
COL27A1-207ENST00000494090 NUP85Q9BW27 656 aa20.42■□□□□ 0.86
COL27A1-207ENST00000494090 MAGEB5Q9BZ81 275 aa20.42■□□□□ 0.86
COL27A1-207ENST00000494090 TDP2O95551 362 aa20.42■□□□□ 0.86
COL27A1-207ENST00000494090 FCER1AP12319 257 aa20.42■□□□□ 0.86
COL27A1-207ENST00000494090 AP3M2P53677 418 aa20.42■□□□□ 0.86
COL27A1-207ENST00000494090 QRICH1Q2TAL8 776 aa20.42■□□□□ 0.86
COL27A1-207ENST00000494090 ANKRD40Q6AI12 368 aa20.42■□□□□ 0.86
COL27A1-207ENST00000494090 ZNF302Q9NR11 478 aa20.42■□□□□ 0.86
COL27A1-207ENST00000494090 SLC13A4Q9UKG4 626 aa20.42■□□□□ 0.86
COL27A1-207ENST00000494090 STAP1Q9ULZ2 295 aa20.42■□□□□ 0.86
COL27A1-207ENST00000494090 SETSIPP0DME0 302 aa20.41■□□□□ 0.86
COL27A1-207ENST00000494090 HOXD10P28358 340 aa20.41■□□□□ 0.86
COL27A1-207ENST00000494090 ART3Q13508 389 aa20.41■□□□□ 0.86
COL27A1-207ENST00000494090 CRLF3Q8IUI8 442 aa20.41■□□□□ 0.86
COL27A1-207ENST00000494090 ZBED2Q9BTP6 218 aa20.41■□□□□ 0.86
COL27A1-207ENST00000494090 HEMGNQ9BXL5 484 aa20.41■□□□□ 0.86
COL27A1-207ENST00000494090 WNT8AQ9H1J5 351 aa20.41■□□□□ 0.86
COL27A1-207ENST00000494090 CYP26B1Q9NR63 512 aa20.41■□□□□ 0.86
COL27A1-207ENST00000494090 FAF1Q9UNN5 650 aaPredicted RBP20.41■□□□□ 0.86
COL27A1-207ENST00000494090 ITIH6Q6UXX5 1313 aa20.41■□□□□ 0.86
COL27A1-207ENST00000494090 SPECC1L-ADORA2AF8WAN1 911 aa20.41■□□□□ 0.86
COL27A1-207ENST00000494090 SLC16A4O15374 487 aa20.41■□□□□ 0.86
COL27A1-207ENST00000494090 GPC3P51654 580 aa20.41■□□□□ 0.86
COL27A1-207ENST00000494090 RWDD4Q6NW29 188 aaKnown RBP20.41■□□□□ 0.86
COL27A1-207ENST00000494090 MMS22LQ6ZRQ5 1243 aa20.41■□□□□ 0.86
COL27A1-207ENST00000494090 COG1Q8WTW3 980 aa20.41■□□□□ 0.86
COL27A1-207ENST00000494090 DACT3Q96B18 629 aaPredicted RBP20.41■□□□□ 0.86
COL27A1-207ENST00000494090 ZBTB18Q99592 522 aa20.41■□□□□ 0.86
COL27A1-207ENST00000494090 DDX47Q9H0S4 455 aaKnown RBP20.41■□□□□ 0.86
COL27A1-207ENST00000494090 EPC1Q9H2F5 836 aa20.41■□□□□ 0.86
COL27A1-207ENST00000494090 QARSP47897 775 aaKnown RBP20.41■□□□□ 0.86
COL27A1-207ENST00000494090 ESRRGP62508 458 aa20.41■□□□□ 0.86
COL27A1-207ENST00000494090 IL1RL1Q01638 556 aa20.41■□□□□ 0.86
COL27A1-207ENST00000494090 ENOSF1Q7L5Y1 443 aa20.41■□□□□ 0.86
COL27A1-207ENST00000494090 NOP9Q86U38 636 aaKnown RBP20.41■□□□□ 0.86
COL27A1-207ENST00000494090 SYT2Q8N9I0 419 aaPredicted RBP20.41■□□□□ 0.86
COL27A1-207ENST00000494090 PFASO15067 1338 aa20.41■□□□□ 0.86
COL27A1-207ENST00000494090 COPEO14579 308 aa20.41■□□□□ 0.86
COL27A1-207ENST00000494090 CTIFO43310 598 aaKnown RBP20.41■□□□□ 0.86
COL27A1-207ENST00000494090 LMNAP02545 664 aaKnown RBP20.41■□□□□ 0.86
COL27A1-207ENST00000494090 NBPF9Q3BBW0 867 aa20.41■□□□□ 0.86
COL27A1-207ENST00000494090 E4F1Q66K89 784 aaPredicted RBP20.41■□□□□ 0.86
COL27A1-207ENST00000494090 RPAINQ86UA6 219 aa20.41■□□□□ 0.86
COL27A1-207ENST00000494090 IGDCC4Q8TDY8 1250 aa20.41■□□□□ 0.86
COL27A1-207ENST00000494090 ATP6V1G3Q96LB4 118 aa20.41■□□□□ 0.86
COL27A1-207ENST00000494090 PPP1R16BQ96T49 567 aa20.41■□□□□ 0.86
COL27A1-207ENST00000494090 TRIM62Q9BVG3 475 aa20.41■□□□□ 0.86
COL27A1-207ENST00000494090 KRT38O76015 456 aa20.4■□□□□ 0.86
COL27A1-207ENST00000494090 GGPS1O95749 300 aa20.4■□□□□ 0.86
COL27A1-207ENST00000494090 NCF2P19878 526 aaPredicted RBP20.4■□□□□ 0.86
COL27A1-207ENST00000494090 MTF1Q14872 753 aa20.4■□□□□ 0.86
COL27A1-207ENST00000494090 PDCD2Q16342 344 aaPredicted RBP20.4■□□□□ 0.86
COL27A1-207ENST00000494090 EPM2AIP1Q7L775 607 aaPredicted RBP20.4■□□□□ 0.86
COL27A1-207ENST00000494090 TRIM15Q9C019 465 aa20.4■□□□□ 0.86
COL27A1-207ENST00000494090 TMEM60Q9H2L4 133 aa20.4■□□□□ 0.86
COL27A1-207ENST00000494090 FTLP02792 175 aaPredicted RBP20.4■□□□□ 0.86
COL27A1-207ENST00000494090 MYBL1P10243 752 aa20.4■□□□□ 0.86
COL27A1-207ENST00000494090 CDR2Q01850 454 aa20.4■□□□□ 0.86
COL27A1-207ENST00000494090 KLHL38Q2WGJ6 581 aa20.4■□□□□ 0.86
COL27A1-207ENST00000494090 ACAP3Q96P50 834 aa20.4■□□□□ 0.86
COL27A1-207ENST00000494090 TDRD3Q9H7E2 651 aaKnown RBP20.4■□□□□ 0.86
COL27A1-207ENST00000494090 RAVER2Q9HCJ3 691 aaKnown RBP20.4■□□□□ 0.86
COL27A1-207ENST00000494090 NOP53Q9NZM5 478 aaKnown RBP20.4■□□□□ 0.86
COL27A1-207ENST00000494090 HERC5Q9UII4 1024 aaKnown RBP20.4■□□□□ 0.86
COL27A1-207ENST00000494090 TWF2Q6IBS0 349 aaKnown RBP20.4■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms