RNA–Protein interactions for RNA: ENST00000494043.1

MCF2L-231, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 896 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-231ENST00000494043 SRGAP2CP0DJJ0 459 aa12.54□□□□□ -0.4
MCF2L-231ENST00000494043 EFNA5P52803 228 aa12.54□□□□□ -0.4
MCF2L-231ENST00000494043 LRRC63Q05C16 580 aa12.54□□□□□ -0.4
MCF2L-231ENST00000494043 ANKRD40Q6AI12 368 aa12.54□□□□□ -0.4
MCF2L-231ENST00000494043 TAF2Q6P1X5 1199 aa12.54□□□□□ -0.4
MCF2L-231ENST00000494043 TAS1R3Q7RTX0 852 aa12.54□□□□□ -0.4
MCF2L-231ENST00000494043 MAP4K3Q8IVH8 894 aa12.54□□□□□ -0.4
MCF2L-231ENST00000494043 ZBTB8OSQ8IWT0 167 aa12.54□□□□□ -0.4
MCF2L-231ENST00000494043 SLC43A3Q8NBI5 491 aa12.54□□□□□ -0.4
MCF2L-231ENST00000494043 RNF149Q8NC42 400 aa12.54□□□□□ -0.4
MCF2L-231ENST00000494043 U2AF1L4Q8WU68 220 aaKnown RBP12.54□□□□□ -0.4
MCF2L-231ENST00000494043 NLRP4Q96MN2 994 aa12.54□□□□□ -0.4
MCF2L-231ENST00000494043 TSG101Q99816 390 aa12.54□□□□□ -0.4
MCF2L-231ENST00000494043 DUSP9Q99956 384 aaKnown RBP12.54□□□□□ -0.4
MCF2L-231ENST00000494043 FAM49AQ9H0Q0 323 aaPredicted RBP12.54□□□□□ -0.4
MCF2L-231ENST00000494043 C2orf40Q9H1Z8 148 aa12.54□□□□□ -0.4
MCF2L-231ENST00000494043 TMEM206Q9H813 350 aa12.54□□□□□ -0.4
MCF2L-231ENST00000494043 GRPEL1Q9HAV7 217 aa12.54□□□□□ -0.4
MCF2L-231ENST00000494043 STARD7Q9NQZ5 370 aa12.54□□□□□ -0.4
MCF2L-231ENST00000494043 TYW1Q9NV66 732 aaKnown RBP12.54□□□□□ -0.4
MCF2L-231ENST00000494043 TBX20Q9UMR3 447 aa12.54□□□□□ -0.4
MCF2L-231ENST00000494043 NFE2L3Q9Y4A8 694 aa12.54□□□□□ -0.4
MCF2L-231ENST00000494043 PHLPP2Q6ZVD8 1323 aa12.54□□□□□ -0.4
MCF2L-231ENST00000494043 DNAH12Q6ZR08 3092 aa12.53□□□□□ -0.4
MCF2L-231ENST00000494043 SIP14410 1827 aa12.53□□□□□ -0.4
MCF2L-231ENST00000494043 PDXKO00764 312 aa12.53□□□□□ -0.4
MCF2L-231ENST00000494043 SGPL1O95470 568 aa12.53□□□□□ -0.4
MCF2L-231ENST00000494043 PHKA2P46019 1235 aa12.53□□□□□ -0.4
MCF2L-231ENST00000494043 PTENP60484 403 aa12.53□□□□□ -0.4
MCF2L-231ENST00000494043 TPM4P67936 248 aa12.53□□□□□ -0.4
MCF2L-231ENST00000494043 CDC42EP1Q00587 391 aa12.53□□□□□ -0.4
MCF2L-231ENST00000494043 POU5F1BQ06416 359 aa12.53□□□□□ -0.4
MCF2L-231ENST00000494043 UVSSAQ2YD98 709 aa12.53□□□□□ -0.4
MCF2L-231ENST00000494043 EDRF1Q3B7T1 1238 aa12.53□□□□□ -0.4
MCF2L-231ENST00000494043 SERINC5Q86VE9 423 aa12.53□□□□□ -0.4
MCF2L-231ENST00000494043 ZNF410Q86VK4 478 aa12.53□□□□□ -0.4
MCF2L-231ENST00000494043 IFNLR1Q8IU57 520 aaPredicted RBP12.53□□□□□ -0.4
MCF2L-231ENST00000494043 SYCP3Q8IZU3 236 aa12.53□□□□□ -0.4
MCF2L-231ENST00000494043 NFKBIZQ9BYH8 718 aa12.53□□□□□ -0.4
MCF2L-231ENST00000494043 CCDC113Q9H0I3 377 aa12.53□□□□□ -0.4
MCF2L-231ENST00000494043 TMEM134Q9H6X4 195 aa12.53□□□□□ -0.4
MCF2L-231ENST00000494043 EXOC7Q9UPT5 735 aa12.53□□□□□ -0.4
MCF2L-231ENST00000494043 TRAF3IP3Q9Y228 551 aa12.53□□□□□ -0.4
MCF2L-231ENST00000494043 KAT6AQ92794 2004 aa12.53□□□□□ -0.4
MCF2L-231ENST00000494043 A0A087WZ62 844 aa12.52□□□□□ -0.41
MCF2L-231ENST00000494043 K7ERI5 159 aa12.52□□□□□ -0.41
MCF2L-231ENST00000494043 ARVCFO00192 962 aa12.52□□□□□ -0.41
MCF2L-231ENST00000494043 TGFB1I1O43294 461 aa12.52□□□□□ -0.41
MCF2L-231ENST00000494043 CALUO43852 315 aaPredicted RBP12.52□□□□□ -0.41
MCF2L-231ENST00000494043 TFRCP02786 760 aaKnown RBP12.52□□□□□ -0.41
MCF2L-231ENST00000494043 GPC3P51654 580 aa12.52□□□□□ -0.41
MCF2L-231ENST00000494043 STRN3Q13033 797 aa12.52□□□□□ -0.41
MCF2L-231ENST00000494043 PTGISQ16647 500 aa12.52□□□□□ -0.41
MCF2L-231ENST00000494043 TPD52L1Q16890 204 aaPredicted RBP12.52□□□□□ -0.41
MCF2L-231ENST00000494043 HS2ST1Q7LGA3 356 aa12.52□□□□□ -0.41
MCF2L-231ENST00000494043 ZC3H3Q8IXZ2 948 aaKnown RBP12.52□□□□□ -0.41
MCF2L-231ENST00000494043 ZNF710Q8N1W2 664 aa12.52□□□□□ -0.41
MCF2L-231ENST00000494043 NME8Q8N427 588 aa12.52□□□□□ -0.41
MCF2L-231ENST00000494043 CSGALNACT2Q8N6G5 542 aa12.52□□□□□ -0.41
MCF2L-231ENST00000494043 GOLGA5Q8TBA6 731 aa12.52□□□□□ -0.41
MCF2L-231ENST00000494043 NOC3LQ8WTT2 800 aaKnown RBP12.52□□□□□ -0.41
MCF2L-231ENST00000494043 DNAJB3Q8WWF6 145 aa12.52□□□□□ -0.41
MCF2L-231ENST00000494043 NLRP7Q8WX94 980 aa12.52□□□□□ -0.41
MCF2L-231ENST00000494043 ZNF668Q96K58 619 aaPredicted RBP12.52□□□□□ -0.41
MCF2L-231ENST00000494043 SCLT1Q96NL6 688 aa12.52□□□□□ -0.41
MCF2L-231ENST00000494043 CTAGE1Q96RT6 745 aa12.52□□□□□ -0.41
MCF2L-231ENST00000494043 PPP1R16BQ96T49 567 aa12.52□□□□□ -0.41
MCF2L-231ENST00000494043 FDXACB1Q9BRP7 624 aaPredicted RBP12.52□□□□□ -0.41
MCF2L-231ENST00000494043 SEZ6LQ9BYH1 1024 aa12.52□□□□□ -0.41
MCF2L-231ENST00000494043 MCOLN1Q9GZU1 580 aa12.52□□□□□ -0.41
MCF2L-231ENST00000494043 GBP3Q9H0R5 595 aa12.52□□□□□ -0.41
MCF2L-231ENST00000494043 HSD3B7Q9H2F3 369 aa12.52□□□□□ -0.41
MCF2L-231ENST00000494043 IKZF4Q9H2S9 585 aa12.52□□□□□ -0.41
MCF2L-231ENST00000494043 ADAMTS10Q9H324 1103 aa12.52□□□□□ -0.41
MCF2L-231ENST00000494043 IFT122Q9HBG6 1241 aa12.52□□□□□ -0.41
MCF2L-231ENST00000494043 FANCLQ9NW38 375 aa12.52□□□□□ -0.41
MCF2L-231ENST00000494043 BRCA2P51587 3418 aa12.51□□□□□ -0.41
MCF2L-231ENST00000494043 EVPLQ92817 2033 aa12.51□□□□□ -0.41
MCF2L-231ENST00000494043 GPR32O75388 356 aa12.51□□□□□ -0.41
MCF2L-231ENST00000494043 PIGRP01833 764 aa12.51□□□□□ -0.41
MCF2L-231ENST00000494043 RPLP2P05387 115 aaKnown RBP12.51□□□□□ -0.41
MCF2L-231ENST00000494043 PRKCBP05771 671 aa12.51□□□□□ -0.41
MCF2L-231ENST00000494043 ZNF18P17022 549 aa12.51□□□□□ -0.41
MCF2L-231ENST00000494043 GJA8P48165 433 aa12.51□□□□□ -0.41
MCF2L-231ENST00000494043 MRE11P49959 708 aa12.51□□□□□ -0.41
MCF2L-231ENST00000494043 MNX1P50219 401 aaPredicted RBP12.51□□□□□ -0.41
MCF2L-231ENST00000494043 NLRP11P59045 1033 aaKnown RBP12.51□□□□□ -0.41
MCF2L-231ENST00000494043 SNRPFP62306 86 aaKnown RBP12.51□□□□□ -0.41
MCF2L-231ENST00000494043 FKBP3Q00688 224 aaKnown RBP12.51□□□□□ -0.41
MCF2L-231ENST00000494043 MBTD1Q05BQ5 628 aa12.51□□□□□ -0.41
MCF2L-231ENST00000494043 PTK7Q13308 1070 aa12.51□□□□□ -0.41
MCF2L-231ENST00000494043 NFIL3Q16649 462 aa12.51□□□□□ -0.41
MCF2L-231ENST00000494043 CDKAL1Q5VV42 579 aa12.51□□□□□ -0.41
MCF2L-231ENST00000494043 LRRC55Q6ZSA7 311 aa12.51□□□□□ -0.41
MCF2L-231ENST00000494043 RSPH3Q86UC2 560 aa12.51□□□□□ -0.41
MCF2L-231ENST00000494043 THAP9Q9H5L6 903 aa12.51□□□□□ -0.41
MCF2L-231ENST00000494043 AGPAT3Q9NRZ7 376 aa12.51□□□□□ -0.41
MCF2L-231ENST00000494043 SAMSN1Q9NSI8 373 aaKnown RBP12.51□□□□□ -0.41
MCF2L-231ENST00000494043 TRMT13Q9NUP7 481 aaKnown RBP12.51□□□□□ -0.41
MCF2L-231ENST00000494043 CGNQ9P2M7 1197 aaKnown RBP12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms