RNA–Protein interactions for RNA: ENST00000493475.2

COL6A3-213, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 669 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-213ENST00000493475 RFC5P40937 340 aa12.97□□□□□ -0.33
COL6A3-213ENST00000493475 PHKA2P46019 1235 aa12.97□□□□□ -0.33
COL6A3-213ENST00000493475 QARSP47897 775 aaKnown RBP12.97□□□□□ -0.33
COL6A3-213ENST00000493475 NHLH1Q02575 133 aa12.97□□□□□ -0.33
COL6A3-213ENST00000493475 ANKRD1Q15327 319 aa12.97□□□□□ -0.33
COL6A3-213ENST00000493475 PCBP1Q15365 356 aaKnown RBP eCLIP12.97□□□□□ -0.33
COL6A3-213ENST00000493475 TARBP2Q15633 366 aaKnown RBP12.97□□□□□ -0.33
COL6A3-213ENST00000493475 LETM2Q2VYF4 491 aa12.97□□□□□ -0.33
COL6A3-213ENST00000493475 ALYREFQ86V81 257 aaKnown RBP12.97□□□□□ -0.33
COL6A3-213ENST00000493475 SLC39A11Q8N1S5 342 aa12.97□□□□□ -0.33
COL6A3-213ENST00000493475 PSPC1Q8WXF1 523 aaKnown RBP12.97□□□□□ -0.33
COL6A3-213ENST00000493475 SUSD6Q92537 303 aa12.97□□□□□ -0.33
COL6A3-213ENST00000493475 NLRP4Q96MN2 994 aa12.97□□□□□ -0.33
COL6A3-213ENST00000493475 CCDC43Q96MW1 224 aaKnown RBP12.97□□□□□ -0.33
COL6A3-213ENST00000493475 TSHZ2Q9NRE2 1034 aa12.97□□□□□ -0.33
COL6A3-213ENST00000493475 KANSL3Q9P2N6 904 aa12.97□□□□□ -0.33
COL6A3-213ENST00000493475 DPP7Q9UHL4 492 aa12.97□□□□□ -0.33
COL6A3-213ENST00000493475 PCDHGC5Q9Y5F6 944 aa12.97□□□□□ -0.33
COL6A3-213ENST00000493475 A0A087WZ62 844 aa12.96□□□□□ -0.33
COL6A3-213ENST00000493475 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP12.96□□□□□ -0.33
COL6A3-213ENST00000493475 TBX3O15119 743 aa12.96□□□□□ -0.33
COL6A3-213ENST00000493475 MAFO75444 373 aaPredicted RBP12.96□□□□□ -0.33
COL6A3-213ENST00000493475 NR1I2O75469 434 aa12.96□□□□□ -0.33
COL6A3-213ENST00000493475 TDP2O95551 362 aa12.96□□□□□ -0.33
COL6A3-213ENST00000493475 CXCL14O95715 111 aa12.96□□□□□ -0.33
COL6A3-213ENST00000493475 NEFLP07196 543 aa12.96□□□□□ -0.33
COL6A3-213ENST00000493475 P4HBP07237 508 aaKnown RBP12.96□□□□□ -0.33
COL6A3-213ENST00000493475 MRE11P49959 708 aa12.96□□□□□ -0.33
COL6A3-213ENST00000493475 BCAR1P56945 870 aa12.96□□□□□ -0.33
COL6A3-213ENST00000493475 MTMR3Q13615 1198 aa12.96□□□□□ -0.33
COL6A3-213ENST00000493475 UGCGQ16739 394 aa12.96□□□□□ -0.33
COL6A3-213ENST00000493475 PTPN21Q16825 1174 aa12.96□□□□□ -0.33
COL6A3-213ENST00000493475 NOMO2Q5JPE7 1267 aa12.96□□□□□ -0.33
COL6A3-213ENST00000493475 ATAT1Q5SQI0 421 aa12.96□□□□□ -0.33
COL6A3-213ENST00000493475 NEK8Q86SG6 692 aa12.96□□□□□ -0.33
COL6A3-213ENST00000493475 SLFN12Q8IYM2 578 aa12.96□□□□□ -0.33
COL6A3-213ENST00000493475 UBALD2Q8IYN6 164 aa12.96□□□□□ -0.33
COL6A3-213ENST00000493475 HACE1Q8IYU2 909 aa12.96□□□□□ -0.33
COL6A3-213ENST00000493475 FBXL6Q8N531 539 aa12.96□□□□□ -0.33
COL6A3-213ENST00000493475 CNNM3Q8NE01 707 aa12.96□□□□□ -0.33
COL6A3-213ENST00000493475 ZNF668Q96K58 619 aaPredicted RBP12.96□□□□□ -0.33
COL6A3-213ENST00000493475 CEP170P1Q96L14 293 aa12.96□□□□□ -0.33
COL6A3-213ENST00000493475 FDXACB1Q9BRP7 624 aaPredicted RBP12.96□□□□□ -0.33
COL6A3-213ENST00000493475 EMILIN2Q9BXX0 1053 aa12.96□□□□□ -0.33
COL6A3-213ENST00000493475 ADAM7Q9H2U9 754 aa12.96□□□□□ -0.33
COL6A3-213ENST00000493475 UBN1Q9NPG3 1134 aa12.96□□□□□ -0.33
COL6A3-213ENST00000493475 CYP26B1Q9NR63 512 aa12.96□□□□□ -0.33
COL6A3-213ENST00000493475 PDRG1Q9NUG6 133 aa12.96□□□□□ -0.33
COL6A3-213ENST00000493475 FAM105AQ9NUU6 356 aa12.96□□□□□ -0.33
COL6A3-213ENST00000493475 SSX2IPQ9Y2D8 614 aa12.96□□□□□ -0.33
COL6A3-213ENST00000493475 CNTNAP2Q9UHC6 1331 aa12.95□□□□□ -0.34
COL6A3-213ENST00000493475 C2orf71A6NGG8 1288 aa12.95□□□□□ -0.34
COL6A3-213ENST00000493475 ASAP2O43150 1006 aa12.95□□□□□ -0.34
COL6A3-213ENST00000493475 ERLIN2O94905 339 aa12.95□□□□□ -0.34
COL6A3-213ENST00000493475 STK3Q13188 491 aa12.95□□□□□ -0.34
COL6A3-213ENST00000493475 PPP2R5CQ13362 524 aa12.95□□□□□ -0.34
COL6A3-213ENST00000493475 CLLU1OSQ5K130 101 aa12.95□□□□□ -0.34
COL6A3-213ENST00000493475 PPP4R3AQ6IN85 833 aa12.95□□□□□ -0.34
COL6A3-213ENST00000493475 LRRC55Q6ZSA7 311 aa12.95□□□□□ -0.34
COL6A3-213ENST00000493475 SRGAP1Q7Z6B7 1085 aa12.95□□□□□ -0.34
COL6A3-213ENST00000493475 ZNF598Q86UK7 904 aaKnown RBP12.95□□□□□ -0.34
COL6A3-213ENST00000493475 SKAP1Q86WV1 359 aa12.95□□□□□ -0.34
COL6A3-213ENST00000493475 VPS52Q8N1B4 723 aa12.95□□□□□ -0.34
COL6A3-213ENST00000493475 INPP5FQ9Y2H2 1132 aa12.95□□□□□ -0.34
COL6A3-213ENST00000493475 COL4A3BPQ9Y5P4 624 aa12.95□□□□□ -0.34
COL6A3-213ENST00000493475 HCFC2Q9Y5Z7 792 aa12.95□□□□□ -0.34
COL6A3-213ENST00000493475 KIAA1671Q9BY89 1806 aa12.95□□□□□ -0.34
COL6A3-213ENST00000493475 LOXHD1Q8IVV2 1947 aa12.94□□□□□ -0.34
COL6A3-213ENST00000493475 FNDC1Q4ZHG4 1894 aaPredicted RBP12.94□□□□□ -0.34
COL6A3-213ENST00000493475 IGKV6-21A0A0C4DH24 114 aa12.94□□□□□ -0.34
COL6A3-213ENST00000493475 HIDE1A8MVS5 230 aa12.94□□□□□ -0.34
COL6A3-213ENST00000493475 CCNT1O60563 726 aaKnown RBP12.94□□□□□ -0.34
COL6A3-213ENST00000493475 ZNF623O75123 536 aa12.94□□□□□ -0.34
COL6A3-213ENST00000493475 FGFR4P22455 802 aa12.94□□□□□ -0.34
COL6A3-213ENST00000493475 PBX3P40426 434 aa12.94□□□□□ -0.34
COL6A3-213ENST00000493475 TFDP1Q14186 410 aa12.94□□□□□ -0.34
COL6A3-213ENST00000493475 INF2Q27J81 1249 aa12.94□□□□□ -0.34
COL6A3-213ENST00000493475 DDX53Q86TM3 631 aaKnown RBP12.94□□□□□ -0.34
COL6A3-213ENST00000493475 CABP7Q86V35 215 aa12.94□□□□□ -0.34
COL6A3-213ENST00000493475 TDRD5Q8NAT2 981 aaKnown RBP12.94□□□□□ -0.34
COL6A3-213ENST00000493475 ETNPPLQ8TBG4 499 aa12.94□□□□□ -0.34
COL6A3-213ENST00000493475 ACSF2Q96CM8 615 aaPredicted RBP12.94□□□□□ -0.34
COL6A3-213ENST00000493475 MBOAT7Q96N66 472 aa12.94□□□□□ -0.34
COL6A3-213ENST00000493475 S1PR5Q9H228 398 aa12.94□□□□□ -0.34
COL6A3-213ENST00000493475 HCSTQ9UBK5 93 aa12.94□□□□□ -0.34
COL6A3-213ENST00000493475 DBR1Q9UK59 544 aaKnown RBP12.94□□□□□ -0.34
COL6A3-213ENST00000493475 IRAK3Q9Y616 596 aa12.94□□□□□ -0.34
COL6A3-213ENST00000493475 EVPLQ92817 2033 aa12.94□□□□□ -0.34
COL6A3-213ENST00000493475 STK36Q9NRP7 1315 aa12.93□□□□□ -0.34
COL6A3-213ENST00000493475 ALDH2P05091 517 aa12.93□□□□□ -0.34
COL6A3-213ENST00000493475 CTSAP10619 480 aa12.93□□□□□ -0.34
COL6A3-213ENST00000493475 KCNC3Q14003 757 aa12.93□□□□□ -0.34
COL6A3-213ENST00000493475 TOB2Q14106 344 aaPredicted RBP12.93□□□□□ -0.34
COL6A3-213ENST00000493475 TRIM29Q14134 588 aa12.93□□□□□ -0.34
COL6A3-213ENST00000493475 MXD4Q14582 209 aaPredicted RBP12.93□□□□□ -0.34
COL6A3-213ENST00000493475 SYCE2Q6PIF2 218 aa12.93□□□□□ -0.34
COL6A3-213ENST00000493475 VN1R2Q8NFZ6 395 aa12.93□□□□□ -0.34
COL6A3-213ENST00000493475 CCDC51Q96ER9 411 aa12.93□□□□□ -0.34
COL6A3-213ENST00000493475 IGSF21Q96ID5 467 aa12.93□□□□□ -0.34
COL6A3-213ENST00000493475 TMEM175Q9BSA9 504 aa12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms