RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 MYRFQ9Y2G1 1151 aa3□□□□□ -1.93
HMGB1-208ENST00000490788 CFTRP13569 1480 aa3□□□□□ -1.93
HMGB1-208ENST00000490788 MYPNQ86TC9 1320 aa2.99□□□□□ -1.93
HMGB1-208ENST00000490788 MUSKO15146 869 aa2.99□□□□□ -1.93
HMGB1-208ENST00000490788 GPR42O15529 346 aa2.99□□□□□ -1.93
HMGB1-208ENST00000490788 SLC26A4O43511 780 aa2.99□□□□□ -1.93
HMGB1-208ENST00000490788 TGM5O43548 720 aa2.99□□□□□ -1.93
HMGB1-208ENST00000490788 OPHN1O60890 802 aa2.99□□□□□ -1.93
HMGB1-208ENST00000490788 MASP1P48740 699 aa2.99□□□□□ -1.93
HMGB1-208ENST00000490788 SELENOPP49908 381 aa2.99□□□□□ -1.93
HMGB1-208ENST00000490788 SESN3P58005 492 aa2.99□□□□□ -1.93
HMGB1-208ENST00000490788 BPIFB4P59827 614 aa2.99□□□□□ -1.93
HMGB1-208ENST00000490788 ATP2C1P98194 919 aaPredicted RBP2.99□□□□□ -1.93
HMGB1-208ENST00000490788 FAPQ12884 760 aa2.99□□□□□ -1.93
HMGB1-208ENST00000490788 TCIRG1Q13488 830 aa2.99□□□□□ -1.93
HMGB1-208ENST00000490788 TERF2Q15554 542 aa2.99□□□□□ -1.93
HMGB1-208ENST00000490788 CREB3L3Q68CJ9 461 aa2.99□□□□□ -1.93
HMGB1-208ENST00000490788 TCTN3Q6NUS6 607 aa2.99□□□□□ -1.93
HMGB1-208ENST00000490788 LMBR1LQ6UX01 489 aa2.99□□□□□ -1.93
HMGB1-208ENST00000490788 POLNQ7Z5Q5 900 aa2.99□□□□□ -1.93
HMGB1-208ENST00000490788 RNF180Q86T96 592 aa2.99□□□□□ -1.93
HMGB1-208ENST00000490788 RASSF3Q86WH2 238 aa2.99□□□□□ -1.93
HMGB1-208ENST00000490788 THNSL2Q86YJ6 484 aa2.99□□□□□ -1.93
HMGB1-208ENST00000490788 CDYL2Q8N8U2 506 aa2.99□□□□□ -1.93
HMGB1-208ENST00000490788 ANKRD53Q8N9V6 530 aa2.99□□□□□ -1.93
HMGB1-208ENST00000490788 PLA2G15Q8NCC3 412 aa2.99□□□□□ -1.93
HMGB1-208ENST00000490788 SHCBP1Q8NEM2 672 aa2.99□□□□□ -1.93
HMGB1-208ENST00000490788 RSAD2Q8WXG1 361 aa2.99□□□□□ -1.93
HMGB1-208ENST00000490788 ARL8AQ96BM9 186 aa2.99□□□□□ -1.93
HMGB1-208ENST00000490788 RPL10LQ96L21 214 aaKnown RBP2.99□□□□□ -1.93
HMGB1-208ENST00000490788 PLA2G12BQ9BX93 195 aa2.99□□□□□ -1.93
HMGB1-208ENST00000490788 ANO3Q9BYT9 981 aa2.99□□□□□ -1.93
HMGB1-208ENST00000490788 WNT8AQ9H1J5 351 aa2.99□□□□□ -1.93
HMGB1-208ENST00000490788 MEGF9Q9H1U4 602 aa2.99□□□□□ -1.93
HMGB1-208ENST00000490788 EPC1Q9H2F5 836 aa2.99□□□□□ -1.93
HMGB1-208ENST00000490788 SLC6A15Q9H2J7 730 aa2.99□□□□□ -1.93
HMGB1-208ENST00000490788 SPC25Q9HBM1 224 aa2.99□□□□□ -1.93
HMGB1-208ENST00000490788 MCM8Q9UJA3 840 aa2.99□□□□□ -1.93
HMGB1-208ENST00000490788 PCDHB6Q9Y5E3 794 aa2.99□□□□□ -1.93
HMGB1-208ENST00000490788 TARBP1Q13395 1621 aaKnown RBP2.99□□□□□ -1.93
HMGB1-208ENST00000490788 PRG4Q92954 1404 aaPredicted RBP2.99□□□□□ -1.93
HMGB1-208ENST00000490788 MROH2BQ7Z745 1585 aa2.99□□□□□ -1.93
HMGB1-208ENST00000490788 SETBP1Q9Y6X0 1596 aa2.99□□□□□ -1.93
HMGB1-208ENST00000490788 ZNF335Q9H4Z2 1342 aaPredicted RBP2.98□□□□□ -1.93
HMGB1-208ENST00000490788 GRIN2BQ13224 1484 aa2.98□□□□□ -1.93
HMGB1-208ENST00000490788 ZCCHC6Q5VYS8 1495 aaKnown RBP2.98□□□□□ -1.93
HMGB1-208ENST00000490788 A0A0A6YYJ9 748 aa2.98□□□□□ -1.93
HMGB1-208ENST00000490788 FAM83GA6ND36 823 aa2.98□□□□□ -1.93
HMGB1-208ENST00000490788 PATE3B3GLJ2 98 aa2.98□□□□□ -1.93
HMGB1-208ENST00000490788 NEMP1O14524 444 aa2.98□□□□□ -1.93
HMGB1-208ENST00000490788 CYP27B1O15528 508 aa2.98□□□□□ -1.93
HMGB1-208ENST00000490788 DNAJC6O75061 913 aa2.98□□□□□ -1.93
HMGB1-208ENST00000490788 RAD17O75943 681 aa2.98□□□□□ -1.93
HMGB1-208ENST00000490788 JUNP05412 331 aaKnown RBP2.98□□□□□ -1.93
HMGB1-208ENST00000490788 COMTP21964 271 aa2.98□□□□□ -1.93
HMGB1-208ENST00000490788 GPR15P49685 360 aa2.98□□□□□ -1.93
HMGB1-208ENST00000490788 NPEPPSP55786 919 aa2.98□□□□□ -1.93
HMGB1-208ENST00000490788 ANTXR2P58335 489 aa2.98□□□□□ -1.93
HMGB1-208ENST00000490788 ADAM17P78536 824 aa2.98□□□□□ -1.93
HMGB1-208ENST00000490788 TMPRSS15P98073 1019 aa2.98□□□□□ -1.93
HMGB1-208ENST00000490788 PPARAQ07869 468 aa2.98□□□□□ -1.93
HMGB1-208ENST00000490788 ICAM4Q14773 271 aa2.98□□□□□ -1.93
HMGB1-208ENST00000490788 GRM7Q14831 915 aa2.98□□□□□ -1.93
HMGB1-208ENST00000490788 PRKD1Q15139 912 aaPredicted RBP2.98□□□□□ -1.93
HMGB1-208ENST00000490788 TBR1Q16650 682 aa2.98□□□□□ -1.93
HMGB1-208ENST00000490788 UGT8Q16880 541 aa2.98□□□□□ -1.93
HMGB1-208ENST00000490788 CCDC178Q5BJE1 867 aa2.98□□□□□ -1.93
HMGB1-208ENST00000490788 CCDC62Q6P9F0 684 aa2.98□□□□□ -1.93
HMGB1-208ENST00000490788 UNQ6494/PRO21346Q6UXR6 183 aa2.98□□□□□ -1.93
HMGB1-208ENST00000490788 KANSL1Q7Z3B3 1105 aa2.98□□□□□ -1.93
HMGB1-208ENST00000490788 SGMS1Q86VZ5 419 aa2.98□□□□□ -1.93
HMGB1-208ENST00000490788 CXorf67Q86X51 503 aaPredicted RBP2.98□□□□□ -1.93
HMGB1-208ENST00000490788 GLB1L2Q8IW92 636 aa2.98□□□□□ -1.93
HMGB1-208ENST00000490788 PALM2Q8IXS6 379 aa2.98□□□□□ -1.93
HMGB1-208ENST00000490788 D2HGDHQ8N465 521 aa2.98□□□□□ -1.93
HMGB1-208ENST00000490788 GAB3Q8WWW8 586 aa2.98□□□□□ -1.93
HMGB1-208ENST00000490788 RABGGTAQ92696 567 aa2.98□□□□□ -1.93
HMGB1-208ENST00000490788 TMEM176AQ96HP8 235 aa2.98□□□□□ -1.93
HMGB1-208ENST00000490788 ZNF496Q96IT1 587 aaPredicted RBP2.98□□□□□ -1.93
HMGB1-208ENST00000490788 ACAP3Q96P50 834 aa2.98□□□□□ -1.93
HMGB1-208ENST00000490788 ADOQ96SZ5 270 aa2.98□□□□□ -1.93
HMGB1-208ENST00000490788 PITHD1Q9GZP4 211 aaPredicted RBP2.98□□□□□ -1.93
HMGB1-208ENST00000490788 KLC2Q9H0B6 622 aa2.98□□□□□ -1.93
HMGB1-208ENST00000490788 C14orf93Q9H972 538 aaKnown RBP2.98□□□□□ -1.93
HMGB1-208ENST00000490788 ZBTB21Q9ULJ3 1066 aa2.98□□□□□ -1.93
HMGB1-208ENST00000490788 CTDP1Q9Y5B0 961 aaPredicted RBP2.98□□□□□ -1.93
HMGB1-208ENST00000490788 ABCC8Q09428 1581 aa2.98□□□□□ -1.93
HMGB1-208ENST00000490788 STRCQ7RTU9 1775 aa2.97□□□□□ -1.93
HMGB1-208ENST00000490788 ADCY10Q96PN6 1610 aa2.97□□□□□ -1.93
HMGB1-208ENST00000490788 PLB1Q6P1J6 1458 aa2.97□□□□□ -1.93
HMGB1-208ENST00000490788 RAD54L2Q9Y4B4 1467 aa2.97□□□□□ -1.93
HMGB1-208ENST00000490788 BCORL1Q5H9F3 1711 aa2.97□□□□□ -1.93
HMGB1-208ENST00000490788 GLI2P10070 1586 aa2.97□□□□□ -1.93
HMGB1-208ENST00000490788 PEG3Q9GZU2 1588 aa2.97□□□□□ -1.93
HMGB1-208ENST00000490788 PRSS38A1L453 326 aa2.97□□□□□ -1.93
HMGB1-208ENST00000490788 PMS2P1A4D2B8 440 aa2.97□□□□□ -1.93
HMGB1-208ENST00000490788 GOLGA8AA7E2F4 631 aa2.97□□□□□ -1.93
HMGB1-208ENST00000490788 ELL2O00472 640 aaPredicted RBP2.97□□□□□ -1.93
HMGB1-208ENST00000490788 NRP1O14786 923 aa2.97□□□□□ -1.93
HMGB1-208ENST00000490788 FOXS1O43638 330 aa2.97□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms