RNA–Protein interactions for RNA: ENST00000489212.2

LIME1-207, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 5

Gene LIME1, Length 559 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-207ENST00000489212 LMAN2LQ9H0V9 348 aa23.52■■□□□ 1.36
LIME1-207ENST00000489212 FAM105AQ9NUU6 356 aa23.52■■□□□ 1.36
LIME1-207ENST00000489212 MEIS3P2A8K0S8 358 aa23.51■■□□□ 1.35
LIME1-207ENST00000489212 CSPG5O95196 566 aa23.51■■□□□ 1.35
LIME1-207ENST00000489212 CDC25AP30304 524 aa23.51■■□□□ 1.35
LIME1-207ENST00000489212 POU5F1BQ06416 359 aa23.51■■□□□ 1.35
LIME1-207ENST00000489212 NAALADL2Q58DX5 795 aa23.51■■□□□ 1.35
LIME1-207ENST00000489212 TCEAL5Q5H9L2 206 aa23.51■■□□□ 1.35
LIME1-207ENST00000489212 SPOUT1Q5T280 376 aaKnown RBP23.51■■□□□ 1.35
LIME1-207ENST00000489212 PADI6Q6TGC4 694 aa23.51■■□□□ 1.35
LIME1-207ENST00000489212 DTHD1Q6ZMT9 781 aa23.51■■□□□ 1.35
LIME1-207ENST00000489212 IFNLR1Q8IU57 520 aaPredicted RBP23.51■■□□□ 1.35
LIME1-207ENST00000489212 HELQQ8TDG4 1101 aa23.51■■□□□ 1.35
LIME1-207ENST00000489212 SNX29Q8TEQ0 813 aa23.51■■□□□ 1.35
LIME1-207ENST00000489212 LPPQ93052 612 aa23.51■■□□□ 1.35
LIME1-207ENST00000489212 HLA-CQ95604 372 aa23.51■■□□□ 1.35
LIME1-207ENST00000489212 MMTAG2Q9BU76 263 aaKnown RBP23.51■■□□□ 1.35
LIME1-207ENST00000489212 COG5Q9UP83 839 aa23.51■■□□□ 1.35
LIME1-207ENST00000489212 KIAA1024Q9UPX6 916 aa23.51■■□□□ 1.35
LIME1-207ENST00000489212 PLXNA4Q9HCM2 1894 aa23.51■■□□□ 1.35
LIME1-207ENST00000489212 MBTD1Q05BQ5 628 aa23.5■■□□□ 1.35
LIME1-207ENST00000489212 TFDP1Q14186 410 aa23.5■■□□□ 1.35
LIME1-207ENST00000489212 LONRF3Q496Y0 759 aa23.5■■□□□ 1.35
LIME1-207ENST00000489212 UBXN11Q5T124 520 aa23.5■■□□□ 1.35
LIME1-207ENST00000489212 COLGALT1Q8NBJ5 622 aa23.5■■□□□ 1.35
LIME1-207ENST00000489212 MCPH1Q8NEM0 835 aa23.5■■□□□ 1.35
LIME1-207ENST00000489212 RAB34Q9BZG1 259 aa23.5■■□□□ 1.35
LIME1-207ENST00000489212 NSUN3Q9H649 340 aaKnown RBP23.5■■□□□ 1.35
LIME1-207ENST00000489212 NCOR1O75376 2440 aa23.5■■□□□ 1.35
LIME1-207ENST00000489212 ARHGEF35A5YM69 484 aa23.49■■□□□ 1.35
LIME1-207ENST00000489212 TSPAN1O60635 241 aa23.49■■□□□ 1.35
LIME1-207ENST00000489212 ZNF623O75123 536 aa23.49■■□□□ 1.35
LIME1-207ENST00000489212 CYP11B2P19099 503 aa23.49■■□□□ 1.35
LIME1-207ENST00000489212 AMHR2Q16671 573 aa23.49■■□□□ 1.35
LIME1-207ENST00000489212 ABI1Q8IZP0 508 aa23.49■■□□□ 1.35
LIME1-207ENST00000489212 LRRC43Q8N309 656 aa23.49■■□□□ 1.35
LIME1-207ENST00000489212 BSNDQ8WZ55 320 aa23.49■■□□□ 1.35
LIME1-207ENST00000489212 BHMT2Q9H2M3 363 aa23.49■■□□□ 1.35
LIME1-207ENST00000489212 DDX19AQ9NUU7 478 aaKnown RBP23.49■■□□□ 1.35
LIME1-207ENST00000489212 PCDHB2Q9Y5E7 798 aa23.49■■□□□ 1.35
LIME1-207ENST00000489212 PCDHB12Q9Y5F1 795 aa23.49■■□□□ 1.35
LIME1-207ENST00000489212 MUC3AQ02505 3323 aa23.49■■□□□ 1.35
LIME1-207ENST00000489212 VPS37CA5D8V6 355 aaPredicted RBP23.48■■□□□ 1.35
LIME1-207ENST00000489212 INO80B-WBP1J3KQ70 363 aa23.48■■□□□ 1.35
LIME1-207ENST00000489212 RAB27AP51159 221 aa23.48■■□□□ 1.35
LIME1-207ENST00000489212 KCNQ1P51787 676 aa23.48■■□□□ 1.35
LIME1-207ENST00000489212 POF1BQ8WVV4 589 aa23.48■■□□□ 1.35
LIME1-207ENST00000489212 NFKBIZQ9BYH8 718 aa23.48■■□□□ 1.35
LIME1-207ENST00000489212 AAASQ9NRG9 546 aa23.48■■□□□ 1.35
LIME1-207ENST00000489212 TCF20Q9UGU0 1960 aaKnown RBP23.48■■□□□ 1.35
LIME1-207ENST00000489212 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP23.47■■□□□ 1.35
LIME1-207ENST00000489212 K7ELQ4 463 aaPredicted RBP23.47■■□□□ 1.35
LIME1-207ENST00000489212 ERLIN2O94905 339 aa23.47■■□□□ 1.35
LIME1-207ENST00000489212 SKIP12755 728 aa23.47■■□□□ 1.35
LIME1-207ENST00000489212 LAG3P18627 525 aa23.47■■□□□ 1.35
LIME1-207ENST00000489212 IRS1P35568 1242 aa23.47■■□□□ 1.35
LIME1-207ENST00000489212 PBX3P40426 434 aa23.47■■□□□ 1.35
LIME1-207ENST00000489212 PCBP1Q15365 356 aaKnown RBP eCLIP23.47■■□□□ 1.35
LIME1-207ENST00000489212 KRT79Q5XKE5 535 aa23.47■■□□□ 1.35
LIME1-207ENST00000489212 INTS4Q96HW7 963 aaKnown RBP23.47■■□□□ 1.35
LIME1-207ENST00000489212 CPB2Q96IY4 423 aa23.47■■□□□ 1.35
LIME1-207ENST00000489212 UBE2ZQ9H832 354 aaPredicted RBP23.47■■□□□ 1.35
LIME1-207ENST00000489212 POLD4Q9HCU8 107 aa23.47■■□□□ 1.35
LIME1-207ENST00000489212 FOXD4L1Q9NU39 408 aa23.47■■□□□ 1.35
LIME1-207ENST00000489212 STK24Q9Y6E0 443 aa23.47■■□□□ 1.35
LIME1-207ENST00000489212 VWA3AA6NCI4 1184 aa23.46■■□□□ 1.35
LIME1-207ENST00000489212 E9PMD0 336 aa23.46■■□□□ 1.35
LIME1-207ENST00000489212 FGF18O76093 207 aa23.46■■□□□ 1.35
LIME1-207ENST00000489212 BMP1P13497 986 aa23.46■■□□□ 1.35
LIME1-207ENST00000489212 AGMOQ6ZNB7 445 aa23.46■■□□□ 1.35
LIME1-207ENST00000489212 KCNK18Q7Z418 384 aa23.46■■□□□ 1.35
LIME1-207ENST00000489212 BRAPQ7Z569 592 aa23.46■■□□□ 1.35
LIME1-207ENST00000489212 MRPL10Q7Z7H8 261 aaKnown RBP23.46■■□□□ 1.35
LIME1-207ENST00000489212 EIF2AQ9BY44 585 aaKnown RBP23.46■■□□□ 1.35
LIME1-207ENST00000489212 PCDHGC5Q9Y5F6 944 aa23.46■■□□□ 1.35
LIME1-207ENST00000489212 LRRIQ4A6NIV6 560 aa23.45■■□□□ 1.34
LIME1-207ENST00000489212 B4GALT5O43286 388 aa23.45■■□□□ 1.34
LIME1-207ENST00000489212 OFD1O75665 1012 aa23.45■■□□□ 1.34
LIME1-207ENST00000489212 ARF4P18085 180 aaPredicted RBP23.45■■□□□ 1.34
LIME1-207ENST00000489212 PDCP20941 246 aa23.45■■□□□ 1.34
LIME1-207ENST00000489212 SYT1P21579 422 aa23.45■■□□□ 1.34
LIME1-207ENST00000489212 AXLP30530 894 aa23.45■■□□□ 1.34
LIME1-207ENST00000489212 COL19A1Q14993 1142 aa23.45■■□□□ 1.34
LIME1-207ENST00000489212 ARL6IP4Q66PJ3 421 aaKnown RBP23.45■■□□□ 1.34
LIME1-207ENST00000489212 CDCA2Q69YH5 1023 aaPredicted RBP23.45■■□□□ 1.34
LIME1-207ENST00000489212 KCNT2Q6UVM3 1135 aa23.45■■□□□ 1.34
LIME1-207ENST00000489212 THNSL1Q8IYQ7 743 aa23.45■■□□□ 1.34
LIME1-207ENST00000489212 EYA4O95677 639 aa23.44■■□□□ 1.34
LIME1-207ENST00000489212 GTF2F1P35269 517 aaKnown RBP eCLIP23.44■■□□□ 1.34
LIME1-207ENST00000489212 HYAL1Q12794 435 aa23.44■■□□□ 1.34
LIME1-207ENST00000489212 CSPP1Q1MSJ5 1256 aa23.44■■□□□ 1.34
LIME1-207ENST00000489212 AAK1Q2M2I8 961 aa23.44■■□□□ 1.34
LIME1-207ENST00000489212 ADGRD2Q7Z7M1 963 aa23.44■■□□□ 1.34
LIME1-207ENST00000489212 SMG8Q8ND04 991 aaKnown RBP23.44■■□□□ 1.34
LIME1-207ENST00000489212 SYMPKQ92797 1274 aaKnown RBP23.44■■□□□ 1.34
LIME1-207ENST00000489212 ZNF558Q96NG5 402 aa23.44■■□□□ 1.34
LIME1-207ENST00000489212 PNMA5Q96PV4 448 aa23.44■■□□□ 1.34
LIME1-207ENST00000489212 MRPL9Q9BYD2 267 aaKnown RBP23.44■■□□□ 1.34
LIME1-207ENST00000489212 DNM3Q9UQ16 869 aa23.44■■□□□ 1.34
LIME1-207ENST00000489212 INPP5FQ9Y2H2 1132 aa23.44■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms