RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 MIER3Q7Z3K6 550 aa19.44■□□□□ 0.7
VIM-206ENST00000487938 ARHGEF19Q8IW93 802 aa19.44■□□□□ 0.7
VIM-206ENST00000487938 EPN3Q9H201 632 aa19.44■□□□□ 0.7
VIM-206ENST00000487938 KCND2Q9NZV8 630 aa19.44■□□□□ 0.7
VIM-206ENST00000487938 SYNPO2Q9UMS6 1093 aa19.44■□□□□ 0.7
VIM-206ENST00000487938 ZNF646O15015 1829 aaPredicted RBP19.44■□□□□ 0.7
VIM-206ENST00000487938 MYH11P35749 1972 aa19.44■□□□□ 0.7
VIM-206ENST00000487938 SPDYE2BA6NHP3 402 aa19.44■□□□□ 0.7
VIM-206ENST00000487938 VGLL3A8MV65 326 aa19.44■□□□□ 0.7
VIM-206ENST00000487938 PPP1R37O75864 691 aa19.44■□□□□ 0.7
VIM-206ENST00000487938 SPDYE6P0CI01 402 aa19.44■□□□□ 0.7
VIM-206ENST00000487938 KRT13P13646 458 aa19.44■□□□□ 0.7
VIM-206ENST00000487938 GCLMP48507 274 aa19.44■□□□□ 0.7
VIM-206ENST00000487938 POU5F1Q01860 360 aaKnown RBP19.44■□□□□ 0.7
VIM-206ENST00000487938 PPP3CAQ08209 521 aa19.44■□□□□ 0.7
VIM-206ENST00000487938 SF3B2Q13435 895 aaKnown RBP19.44■□□□□ 0.7
VIM-206ENST00000487938 TBC1D10BQ4KMP7 808 aaPredicted RBP19.44■□□□□ 0.7
VIM-206ENST00000487938 GRIPAP1Q4V328 841 aa19.44■□□□□ 0.7
VIM-206ENST00000487938 CNKSR1Q969H4 720 aa19.44■□□□□ 0.7
VIM-206ENST00000487938 VCPKMTQ9H867 229 aa19.44■□□□□ 0.7
VIM-206ENST00000487938 VEZTQ9HBM0 779 aa19.44■□□□□ 0.7
VIM-206ENST00000487938 ERVK-5Q9HDB9 667 aa19.44■□□□□ 0.7
VIM-206ENST00000487938 TMOD4Q9NZQ9 345 aa19.44■□□□□ 0.7
VIM-206ENST00000487938 ZNF70Q9UC06 446 aaPredicted RBP19.44■□□□□ 0.7
VIM-206ENST00000487938 ANKRD62A6NC57 917 aa19.43■□□□□ 0.7
VIM-206ENST00000487938 MYO1FO00160 1098 aa19.43■□□□□ 0.7
VIM-206ENST00000487938 RAD17O75943 681 aa19.43■□□□□ 0.7
VIM-206ENST00000487938 MUTP22033 750 aa19.43■□□□□ 0.7
VIM-206ENST00000487938 USP8P40818 1118 aa19.43■□□□□ 0.7
VIM-206ENST00000487938 DHX9Q08211 1270 aaKnown RBP19.43■□□□□ 0.7
VIM-206ENST00000487938 KIF22Q14807 665 aa19.43■□□□□ 0.7
VIM-206ENST00000487938 PTGISQ16647 500 aa19.43■□□□□ 0.7
VIM-206ENST00000487938 TTC31Q49AM3 519 aaPredicted RBP19.43■□□□□ 0.7
VIM-206ENST00000487938 TADA2BQ86TJ2 420 aa19.43■□□□□ 0.7
VIM-206ENST00000487938 C1orf131Q8NDD1 294 aaKnown RBP19.43■□□□□ 0.7
VIM-206ENST00000487938 C7orf43Q8WVR3 580 aa19.43■□□□□ 0.7
VIM-206ENST00000487938 CBWD1Q9BRT8 395 aa19.43■□□□□ 0.7
VIM-206ENST00000487938 LRRC4CQ9HCJ2 640 aa19.43■□□□□ 0.7
VIM-206ENST00000487938 COL20A1Q9P218 1284 aa19.43■□□□□ 0.7
VIM-206ENST00000487938 TMEM110-MUSTN1A8MSY1 372 aa19.42■□□□□ 0.7
VIM-206ENST00000487938 SETQ01105 290 aaPredicted RBP19.42■□□□□ 0.7
VIM-206ENST00000487938 ZNF746Q6NUN9 644 aaPredicted RBP19.42■□□□□ 0.7
VIM-206ENST00000487938 SLC9A9Q8IVB4 645 aa19.42■□□□□ 0.7
VIM-206ENST00000487938 BBXQ8WY36 941 aaPredicted RBP19.42■□□□□ 0.7
VIM-206ENST00000487938 ALG3Q92685 438 aa19.42■□□□□ 0.7
VIM-206ENST00000487938 GLG1Q92896 1179 aa19.42■□□□□ 0.7
VIM-206ENST00000487938 FAM107BQ9H098 131 aa19.42■□□□□ 0.7
VIM-206ENST00000487938 KCNH7Q9NS40 1196 aa19.42■□□□□ 0.7
VIM-206ENST00000487938 TTC7AQ9ULT0 858 aaPredicted RBP19.42■□□□□ 0.7
VIM-206ENST00000487938 RBBP6Q7Z6E9 1792 aaKnown RBP19.42■□□□□ 0.7
VIM-206ENST00000487938 C21orf2O43822 256 aa19.42■□□□□ 0.7
VIM-206ENST00000487938 FTLP02792 175 aaPredicted RBP19.42■□□□□ 0.7
VIM-206ENST00000487938 BCRP11274 1271 aa19.42■□□□□ 0.7
VIM-206ENST00000487938 VAMP7P51809 220 aa19.42■□□□□ 0.7
VIM-206ENST00000487938 TMC3Q7Z5M5 1100 aa19.42■□□□□ 0.7
VIM-206ENST00000487938 IL31RAQ8NI17 732 aa19.42■□□□□ 0.7
VIM-206ENST00000487938 FAM151AQ8WW52 585 aa19.42■□□□□ 0.7
VIM-206ENST00000487938 TMEM39BQ9GZU3 492 aa19.42■□□□□ 0.7
VIM-206ENST00000487938 PPANQ9NQ55 473 aaKnown RBP19.42■□□□□ 0.7
VIM-206ENST00000487938 ZBTB12Q9Y330 459 aaPredicted RBP19.42■□□□□ 0.7
VIM-206ENST00000487938 ALG6Q9Y672 507 aa19.42■□□□□ 0.7
VIM-206ENST00000487938 TMEM150BA6NC51 233 aa19.41■□□□□ 0.7
VIM-206ENST00000487938 DLGAP5Q15398 846 aa19.41■□□□□ 0.7
VIM-206ENST00000487938 ODF2Q5BJF6 829 aa19.41■□□□□ 0.7
VIM-206ENST00000487938 KAT5Q92993 513 aa19.41■□□□□ 0.7
VIM-206ENST00000487938 FAM114A2Q9NRY5 505 aa19.41■□□□□ 0.7
VIM-206ENST00000487938 CTTNBP2NLQ9P2B4 639 aa19.41■□□□□ 0.7
VIM-206ENST00000487938 ZHX2Q9Y6X8 837 aa19.41■□□□□ 0.7
VIM-206ENST00000487938 E7EVH7 732 aa19.41■□□□□ 0.7
VIM-206ENST00000487938 RPUSD2Q8IZ73 545 aaKnown RBP19.41■□□□□ 0.7
VIM-206ENST00000487938 ZNF473Q8WTR7 871 aaKnown RBP19.41■□□□□ 0.7
VIM-206ENST00000487938 SEC14L1Q92503 715 aa19.41■□□□□ 0.7
VIM-206ENST00000487938 CCT8L2Q96SF2 557 aa19.41■□□□□ 0.7
VIM-206ENST00000487938 RIT2Q99578 217 aa19.41■□□□□ 0.7
VIM-206ENST00000487938 LARSQ9P2J5 1176 aaKnown RBP19.41■□□□□ 0.7
VIM-206ENST00000487938 CCPG1Q9ULG6 757 aa19.41■□□□□ 0.7
VIM-206ENST00000487938 ATP8A1Q9Y2Q0 1164 aa19.41■□□□□ 0.7
VIM-206ENST00000487938 NFIBO00712 420 aa19.4■□□□□ 0.7
VIM-206ENST00000487938 TMOD1P28289 359 aa19.4■□□□□ 0.7
VIM-206ENST00000487938 INPP5BP32019 993 aa19.4■□□□□ 0.7
VIM-206ENST00000487938 PTENP60484 403 aa19.4■□□□□ 0.7
VIM-206ENST00000487938 DR1Q01658 176 aa19.4■□□□□ 0.7
VIM-206ENST00000487938 B4GALNT4Q76KP1 1039 aa19.4■□□□□ 0.7
VIM-206ENST00000487938 NLRP14Q86W24 1093 aa19.4■□□□□ 0.7
VIM-206ENST00000487938 ATP8B4Q8TF62 1192 aa19.4■□□□□ 0.7
VIM-206ENST00000487938 CARD9Q9H257 536 aa19.4■□□□□ 0.7
VIM-206ENST00000487938 ACP6Q9NPH0 428 aa19.4■□□□□ 0.7
VIM-206ENST00000487938 NOVA2Q9UNW9 492 aaKnown RBP19.4■□□□□ 0.7
VIM-206ENST00000487938 SCAF8Q9UPN6 1271 aaKnown RBP19.4■□□□□ 0.7
VIM-206ENST00000487938 CNTNAP1P78357 1384 aa19.4■□□□□ 0.7
VIM-206ENST00000487938 GOLGA8IPA6NC78 632 aa19.4■□□□□ 0.7
VIM-206ENST00000487938 GOLGA8JA6NMD2 632 aa19.4■□□□□ 0.7
VIM-206ENST00000487938 P4HBP07237 508 aaKnown RBP19.4■□□□□ 0.7
VIM-206ENST00000487938 MTMR3Q13615 1198 aa19.4■□□□□ 0.7
VIM-206ENST00000487938 C1orf220Q5T0J3 134 aa19.4■□□□□ 0.7
VIM-206ENST00000487938 INTS8Q75QN2 995 aaKnown RBP19.4■□□□□ 0.7
VIM-206ENST00000487938 FAM160B2Q86V87 743 aa19.4■□□□□ 0.7
VIM-206ENST00000487938 PLEKHO2Q8TD55 490 aa19.4■□□□□ 0.7
VIM-206ENST00000487938 KRT35Q92764 455 aa19.4■□□□□ 0.7
VIM-206ENST00000487938 FEM1BQ9UK73 627 aa19.4■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 110.4 ms