RNA–Protein interactions for RNA: ENST00000487461.1

VPS16-208, Transcript of VPS16, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS16, Length 634 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS16-208ENST00000487461 MUC6Q6W4X9 2439 aa13.65□□□□□ -0.22
VPS16-208ENST00000487461 MARCH6O60337 910 aa13.65□□□□□ -0.22
VPS16-208ENST00000487461 CLASP2O75122 1294 aaKnown RBP13.65□□□□□ -0.22
VPS16-208ENST00000487461 OFD1O75665 1012 aa13.65□□□□□ -0.22
VPS16-208ENST00000487461 CXCL14O95715 111 aa13.65□□□□□ -0.22
VPS16-208ENST00000487461 SRGAP2CP0DJJ0 459 aa13.65□□□□□ -0.22
VPS16-208ENST00000487461 SKIP12755 728 aa13.65□□□□□ -0.22
VPS16-208ENST00000487461 ANAPC15P60006 121 aa13.65□□□□□ -0.22
VPS16-208ENST00000487461 SPIRE1Q08AE8 756 aa13.65□□□□□ -0.22
VPS16-208ENST00000487461 LAMTOR4Q0VGL1 99 aa13.65□□□□□ -0.22
VPS16-208ENST00000487461 NR5A1Q13285 461 aa13.65□□□□□ -0.22
VPS16-208ENST00000487461 CTTNQ14247 550 aaKnown RBP13.65□□□□□ -0.22
VPS16-208ENST00000487461 SMC1AQ14683 1233 aaKnown RBP13.65□□□□□ -0.22
VPS16-208ENST00000487461 ANKRD1Q15327 319 aa13.65□□□□□ -0.22
VPS16-208ENST00000487461 ME3Q16798 604 aa13.65□□□□□ -0.22
VPS16-208ENST00000487461 NOMO2Q5JPE7 1267 aa13.65□□□□□ -0.22
VPS16-208ENST00000487461 NCAPH2Q6IBW4 605 aa13.65□□□□□ -0.22
VPS16-208ENST00000487461 TMEM173Q86WV6 379 aaPredicted RBP13.65□□□□□ -0.22
VPS16-208ENST00000487461 SLC7A3Q8WY07 619 aa13.65□□□□□ -0.22
VPS16-208ENST00000487461 WASF1Q92558 559 aa13.65□□□□□ -0.22
VPS16-208ENST00000487461 TNFRSF25Q93038 417 aa13.65□□□□□ -0.22
VPS16-208ENST00000487461 DYDC2Q96IM9 177 aa13.65□□□□□ -0.22
VPS16-208ENST00000487461 NAP1L4Q99733 375 aaKnown RBP13.65□□□□□ -0.22
VPS16-208ENST00000487461 LXNQ9BS40 222 aa13.65□□□□□ -0.22
VPS16-208ENST00000487461 MRPL9Q9BYD2 267 aaKnown RBP13.65□□□□□ -0.22
VPS16-208ENST00000487461 NRDE2Q9H7Z3 1164 aa13.65□□□□□ -0.22
VPS16-208ENST00000487461 MINDY3Q9H8M7 445 aa13.65□□□□□ -0.22
VPS16-208ENST00000487461 COL4A3BPQ9Y5P4 624 aa13.65□□□□□ -0.22
VPS16-208ENST00000487461 TECTAO75443 2155 aa13.65□□□□□ -0.22
VPS16-208ENST00000487461 ZC3H11AO75152 810 aaKnown RBP eCLIP13.64□□□□□ -0.23
VPS16-208ENST00000487461 SLITRK3O94933 977 aa13.64□□□□□ -0.23
VPS16-208ENST00000487461 LARGE1O95461 756 aa13.64□□□□□ -0.23
VPS16-208ENST00000487461 NEFLP07196 543 aa13.64□□□□□ -0.23
VPS16-208ENST00000487461 GALTP07902 379 aa13.64□□□□□ -0.23
VPS16-208ENST00000487461 SRGAP2BP0DMP2 458 aa13.64□□□□□ -0.23
VPS16-208ENST00000487461 HOXA11P31270 313 aaPredicted RBP13.64□□□□□ -0.23
VPS16-208ENST00000487461 YWHABP31946 246 aaKnown RBP13.64□□□□□ -0.23
VPS16-208ENST00000487461 KRT2P35908 639 aa13.64□□□□□ -0.23
VPS16-208ENST00000487461 RFC5P40937 340 aa13.64□□□□□ -0.23
VPS16-208ENST00000487461 POLGP54098 1239 aaPredicted RBP13.64□□□□□ -0.23
VPS16-208ENST00000487461 ZXDAP98168 799 aa13.64□□□□□ -0.23
VPS16-208ENST00000487461 GLB1LQ6UWU2 654 aa13.64□□□□□ -0.23
VPS16-208ENST00000487461 AGMOQ6ZNB7 445 aa13.64□□□□□ -0.23
VPS16-208ENST00000487461 TRIM67Q6ZTA4 783 aa13.64□□□□□ -0.23
VPS16-208ENST00000487461 OTUD6AQ7L8S5 288 aa13.64□□□□□ -0.23
VPS16-208ENST00000487461 MRPL10Q7Z7H8 261 aaKnown RBP13.64□□□□□ -0.23
VPS16-208ENST00000487461 EXOC8Q8IYI6 725 aa13.64□□□□□ -0.23
VPS16-208ENST00000487461 PSPC1Q8WXF1 523 aaKnown RBP13.64□□□□□ -0.23
VPS16-208ENST00000487461 ZSWIM4Q9H7M6 989 aa13.64□□□□□ -0.23
VPS16-208ENST00000487461 BMP2KQ9NSY1 1161 aaPredicted RBP13.64□□□□□ -0.23
VPS16-208ENST00000487461 AGPAT5Q9NUQ2 364 aa13.64□□□□□ -0.23
VPS16-208ENST00000487461 TBC1D13Q9NVG8 400 aa13.64□□□□□ -0.23
VPS16-208ENST00000487461 INPP5FQ9Y2H2 1132 aa13.64□□□□□ -0.23
VPS16-208ENST00000487461 PPME1Q9Y570 386 aa13.64□□□□□ -0.23
VPS16-208ENST00000487461 PCDHB2Q9Y5E7 798 aa13.64□□□□□ -0.23
VPS16-208ENST00000487461 B4GALT3O60512 393 aa13.63□□□□□ -0.23
VPS16-208ENST00000487461 BAG4O95429 457 aaKnown RBP13.63□□□□□ -0.23
VPS16-208ENST00000487461 HOXB8P17481 243 aaPredicted RBP13.63□□□□□ -0.23
VPS16-208ENST00000487461 RAB27AP51159 221 aa13.63□□□□□ -0.23
VPS16-208ENST00000487461 AFF1P51825 1210 aaKnown RBP13.63□□□□□ -0.23
VPS16-208ENST00000487461 CYP4A11Q02928 519 aa13.63□□□□□ -0.23
VPS16-208ENST00000487461 XKR9Q5GH70 373 aa13.63□□□□□ -0.23
VPS16-208ENST00000487461 UBXN11Q5T124 520 aa13.63□□□□□ -0.23
VPS16-208ENST00000487461 SRGAP1Q7Z6B7 1085 aa13.63□□□□□ -0.23
VPS16-208ENST00000487461 DDX53Q86TM3 631 aaKnown RBP13.63□□□□□ -0.23
VPS16-208ENST00000487461 ZNF280BQ86YH2 543 aa13.63□□□□□ -0.23
VPS16-208ENST00000487461 TPH2Q8IWU9 490 aa13.63□□□□□ -0.23
VPS16-208ENST00000487461 SLFN12Q8IYM2 578 aa13.63□□□□□ -0.23
VPS16-208ENST00000487461 VPS52Q8N1B4 723 aa13.63□□□□□ -0.23
VPS16-208ENST00000487461 BCL7CQ8WUZ0 217 aaPredicted RBP13.63□□□□□ -0.23
VPS16-208ENST00000487461 AUTS2Q8WXX7 1259 aa13.63□□□□□ -0.23
VPS16-208ENST00000487461 CASP10Q92851 521 aa13.63□□□□□ -0.23
VPS16-208ENST00000487461 PGBD4Q96DM1 585 aa13.63□□□□□ -0.23
VPS16-208ENST00000487461 TMEM169Q96HH4 297 aa13.63□□□□□ -0.23
VPS16-208ENST00000487461 IGSF21Q96ID5 467 aa13.63□□□□□ -0.23
VPS16-208ENST00000487461 MFSD14AQ96MC6 490 aa13.63□□□□□ -0.23
VPS16-208ENST00000487461 FBXL18Q96ME1 805 aa13.63□□□□□ -0.23
VPS16-208ENST00000487461 PPP4R2Q9NY27 417 aa13.63□□□□□ -0.23
VPS16-208ENST00000487461 DNAJB4Q9UDY4 337 aa13.63□□□□□ -0.23
VPS16-208ENST00000487461 CDH22Q9UJ99 828 aa13.63□□□□□ -0.23
VPS16-208ENST00000487461 HCFC2Q9Y5Z7 792 aa13.63□□□□□ -0.23
VPS16-208ENST00000487461 TMEM221A6NGB7 291 aa13.62□□□□□ -0.23
VPS16-208ENST00000487461 BTBD18B2RXH4 712 aa13.62□□□□□ -0.23
VPS16-208ENST00000487461 M0R296 226 aa13.62□□□□□ -0.23
VPS16-208ENST00000487461 ASAP2O43150 1006 aa13.62□□□□□ -0.23
VPS16-208ENST00000487461 DDHD2O94830 711 aa13.62□□□□□ -0.23
VPS16-208ENST00000487461 CA8P35219 290 aa13.62□□□□□ -0.23
VPS16-208ENST00000487461 SLC11A1P49279 550 aa13.62□□□□□ -0.23
VPS16-208ENST00000487461 RNASELQ05823 741 aaKnown RBP13.62□□□□□ -0.23
VPS16-208ENST00000487461 EMC2Q15006 297 aa13.62□□□□□ -0.23
VPS16-208ENST00000487461 BMP8AQ7Z5Y6 402 aa13.62□□□□□ -0.23
VPS16-208ENST00000487461 FERMT3Q86UX7 667 aa13.62□□□□□ -0.23
VPS16-208ENST00000487461 RNF149Q8NC42 400 aa13.62□□□□□ -0.23
VPS16-208ENST00000487461 NSUN7Q8NE18 718 aaKnown RBP13.62□□□□□ -0.23
VPS16-208ENST00000487461 TCP11Q8WWU5 503 aa13.62□□□□□ -0.23
VPS16-208ENST00000487461 RSPH1Q8WYR4 309 aa13.62□□□□□ -0.23
VPS16-208ENST00000487461 GTF3C6Q969F1 213 aa13.62□□□□□ -0.23
VPS16-208ENST00000487461 HSD17B14Q9BPX1 270 aa13.62□□□□□ -0.23
VPS16-208ENST00000487461 EIF2AK1Q9BQI3 630 aaKnown RBP13.62□□□□□ -0.23
VPS16-208ENST00000487461 VN1R3Q9BXE9 311 aa13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms