RNA–Protein interactions for RNA: ENST00000487401.1

SREBF1-215, Transcript of sterol regulatory element binding transcription factor 1, human

TSL 2

Gene SREBF1, Length 477 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SREBF1-215	ENST00000487401	BCAR1	P56945	870 aa		13.9	□□□□□ -0.18
SREBF1-215	ENST00000487401	SAFB	Q15424	915 aa	Known RBP eCLIP	13.9	□□□□□ -0.18
SREBF1-215	ENST00000487401	SRGAP1	Q7Z6B7	1085 aa		13.9	□□□□□ -0.18
SREBF1-215	ENST00000487401	TMEM87A	Q8NBN3	555 aa		13.9	□□□□□ -0.18
SREBF1-215	ENST00000487401	TNFRSF25	Q93038	417 aa		13.9	□□□□□ -0.18
SREBF1-215	ENST00000487401	LPP	Q93052	612 aa		13.9	□□□□□ -0.18
SREBF1-215	ENST00000487401	CCDC43	Q96MW1	224 aa	Known RBP	13.9	□□□□□ -0.18
SREBF1-215	ENST00000487401	EIF2AK1	Q9BQI3	630 aa	Known RBP	13.9	□□□□□ -0.18
SREBF1-215	ENST00000487401	IFT122	Q9HBG6	1241 aa		13.9	□□□□□ -0.18
SREBF1-215	ENST00000487401	BMP2K	Q9NSY1	1161 aa	Predicted RBP	13.9	□□□□□ -0.18
SREBF1-215	ENST00000487401	FAM105A	Q9NUU6	356 aa		13.9	□□□□□ -0.18
SREBF1-215	ENST00000487401	CARNS1	A5YM72	827 aa		13.89	□□□□□ -0.19
SREBF1-215	ENST00000487401	ZBTB39	O15060	712 aa		13.89	□□□□□ -0.19
SREBF1-215	ENST00000487401	NEMF	O60524	1076 aa		13.89	□□□□□ -0.19
SREBF1-215	ENST00000487401	ZNF623	O75123	536 aa		13.89	□□□□□ -0.19
SREBF1-215	ENST00000487401	SLITRK3	O94933	977 aa		13.89	□□□□□ -0.19
SREBF1-215	ENST00000487401	GLP2R	O95838	553 aa		13.89	□□□□□ -0.19
SREBF1-215	ENST00000487401	CA8	P35219	290 aa		13.89	□□□□□ -0.19
SREBF1-215	ENST00000487401	TXK	P42681	527 aa		13.89	□□□□□ -0.19
SREBF1-215	ENST00000487401	RNASEL	Q05823	741 aa	Known RBP	13.89	□□□□□ -0.19
SREBF1-215	ENST00000487401	SPIRE1	Q08AE8	756 aa		13.89	□□□□□ -0.19
SREBF1-215	ENST00000487401	NCBP1	Q09161	790 aa	Known RBP	13.89	□□□□□ -0.19
SREBF1-215	ENST00000487401	SMC1A	Q14683	1233 aa	Known RBP	13.89	□□□□□ -0.19
SREBF1-215	ENST00000487401	EMC2	Q15006	297 aa		13.89	□□□□□ -0.19
SREBF1-215	ENST00000487401	NOMO2	Q5JPE7	1267 aa		13.89	□□□□□ -0.19
SREBF1-215	ENST00000487401	SLC39A11	Q8N1S5	342 aa		13.89	□□□□□ -0.19
SREBF1-215	ENST00000487401	RNF149	Q8NC42	400 aa		13.89	□□□□□ -0.19
SREBF1-215	ENST00000487401	SMRP1	Q8NCR6	262 aa		13.89	□□□□□ -0.19
SREBF1-215	ENST00000487401	TMEM169	Q96HH4	297 aa		13.89	□□□□□ -0.19
SREBF1-215	ENST00000487401	MTR	Q99707	1265 aa		13.89	□□□□□ -0.19
SREBF1-215	ENST00000487401	TTC12	Q9H892	705 aa	Predicted RBP	13.89	□□□□□ -0.19
SREBF1-215	ENST00000487401	C11orf16	Q9NQ32	467 aa		13.89	□□□□□ -0.19
SREBF1-215	ENST00000487401	LIMCH1	Q9UPQ0	1083 aa		13.89	□□□□□ -0.19
SREBF1-215	ENST00000487401	INPP5F	Q9Y2H2	1132 aa		13.89	□□□□□ -0.19
SREBF1-215	ENST00000487401	USP15	Q9Y4E8	981 aa	Predicted RBP	13.89	□□□□□ -0.19
SREBF1-215	ENST00000487401	PCDHB2	Q9Y5E7	798 aa		13.89	□□□□□ -0.19
SREBF1-215	ENST00000487401	KAT6A	Q92794	2004 aa		13.88	□□□□□ -0.19
SREBF1-215	ENST00000487401	HIDE1	A8MVS5	230 aa		13.88	□□□□□ -0.19
SREBF1-215	ENST00000487401	PRR33	A8MZF0	331 aa		13.88	□□□□□ -0.19
SREBF1-215	ENST00000487401	NT5C1B-RDH14	C9J2C7	533 aa		13.88	□□□□□ -0.19
SREBF1-215	ENST00000487401	ZC3H11A	O75152	810 aa	Known RBP eCLIP	13.88	□□□□□ -0.19
SREBF1-215	ENST00000487401	OFD1	O75665	1012 aa		13.88	□□□□□ -0.19
SREBF1-215	ENST00000487401	SEC24B	O95487	1268 aa		13.88	□□□□□ -0.19
SREBF1-215	ENST00000487401	CXCL14	O95715	111 aa		13.88	□□□□□ -0.19
SREBF1-215	ENST00000487401	ATP2B1	P20020	1258 aa		13.88	□□□□□ -0.19
SREBF1-215	ENST00000487401	TEC	P42680	631 aa		13.88	□□□□□ -0.19
SREBF1-215	ENST00000487401	MXD4	Q14582	209 aa	Predicted RBP	13.88	□□□□□ -0.19
SREBF1-215	ENST00000487401	LLGL2	Q6P1M3	1020 aa		13.88	□□□□□ -0.19
SREBF1-215	ENST00000487401	FERMT3	Q86UX7	667 aa		13.88	□□□□□ -0.19
SREBF1-215	ENST00000487401	MRPL43	Q8N983	215 aa	Known RBP	13.88	□□□□□ -0.19
SREBF1-215	ENST00000487401	VN1R2	Q8NFZ6	395 aa		13.88	□□□□□ -0.19
SREBF1-215	ENST00000487401	URGCP	Q8TCY9	931 aa		13.88	□□□□□ -0.19
SREBF1-215	ENST00000487401	FAM122A	Q96E09	287 aa		13.88	□□□□□ -0.19
SREBF1-215	ENST00000487401	HSD17B14	Q9BPX1	270 aa		13.88	□□□□□ -0.19
SREBF1-215	ENST00000487401	ANKEF1	Q9NU02	776 aa		13.88	□□□□□ -0.19
SREBF1-215	ENST00000487401	AGPAT5	Q9NUQ2	364 aa		13.88	□□□□□ -0.19
SREBF1-215	ENST00000487401	LYPLA2	O95372	231 aa		13.87	□□□□□ -0.19
SREBF1-215	ENST00000487401	RBM10	P98175	930 aa	Known RBP	13.87	□□□□□ -0.19
SREBF1-215	ENST00000487401	GUCY1B3	Q02153	619 aa		13.87	□□□□□ -0.19
SREBF1-215	ENST00000487401	TFDP1	Q14186	410 aa		13.87	□□□□□ -0.19
SREBF1-215	ENST00000487401	ANKRD54	Q6NXT1	300 aa		13.87	□□□□□ -0.19
SREBF1-215	ENST00000487401	TMEM184A	Q6ZMB5	413 aa		13.87	□□□□□ -0.19
SREBF1-215	ENST00000487401	RNF135	Q8IUD6	432 aa		13.87	□□□□□ -0.19
SREBF1-215	ENST00000487401	PHF7	Q9BWX1	381 aa	Predicted RBP	13.87	□□□□□ -0.19
SREBF1-215	ENST00000487401	GBP3	Q9H0R5	595 aa		13.87	□□□□□ -0.19
SREBF1-215	ENST00000487401	MINDY3	Q9H8M7	445 aa		13.87	□□□□□ -0.19
SREBF1-215	ENST00000487401	TBC1D13	Q9NVG8	400 aa		13.87	□□□□□ -0.19
SREBF1-215	ENST00000487401	TCF20	Q9UGU0	1960 aa	Known RBP	13.87	□□□□□ -0.19
SREBF1-215	ENST00000487401	C2orf71	A6NGG8	1288 aa		13.86	□□□□□ -0.19
SREBF1-215	ENST00000487401	DGAT1	O75907	488 aa		13.86	□□□□□ -0.19
SREBF1-215	ENST00000487401	ERLIN2	O94905	339 aa		13.86	□□□□□ -0.19
SREBF1-215	ENST00000487401	GALT	P07902	379 aa		13.86	□□□□□ -0.19
SREBF1-215	ENST00000487401	HOXB8	P17481	243 aa	Predicted RBP	13.86	□□□□□ -0.19
SREBF1-215	ENST00000487401	HOXA11	P31270	313 aa	Predicted RBP	13.86	□□□□□ -0.19
SREBF1-215	ENST00000487401	MCM7	P33993	719 aa		13.86	□□□□□ -0.19
SREBF1-215	ENST00000487401	PCBP1	Q15365	356 aa	Known RBP eCLIP	13.86	□□□□□ -0.19	6e-9	■■■■■ 51
SREBF1-215	ENST00000487401	MRPL10	Q7Z7H8	261 aa	Known RBP	13.86	□□□□□ -0.19
SREBF1-215	ENST00000487401	CCDC83	Q8IWF9	413 aa		13.86	□□□□□ -0.19
SREBF1-215	ENST00000487401	VPS52	Q8N1B4	723 aa		13.86	□□□□□ -0.19
SREBF1-215	ENST00000487401	CASP10	Q92851	521 aa		13.86	□□□□□ -0.19
SREBF1-215	ENST00000487401	C8orf76	Q96K31	380 aa		13.86	□□□□□ -0.19
SREBF1-215	ENST00000487401	RPGRIP1	Q96KN7	1286 aa		13.86	□□□□□ -0.19
SREBF1-215	ENST00000487401	FAM193B	Q96PV7	902 aa	Predicted RBP	13.86	□□□□□ -0.19
SREBF1-215	ENST00000487401	MTMR9	Q96QG7	549 aa		13.86	□□□□□ -0.19
SREBF1-215	ENST00000487401	LLPH	Q9BRT6	129 aa	Known RBP	13.86	□□□□□ -0.19
SREBF1-215	ENST00000487401	NRDE2	Q9H7Z3	1164 aa		13.86	□□□□□ -0.19
SREBF1-215	ENST00000487401	UBN1	Q9NPG3	1134 aa		13.86	□□□□□ -0.19
SREBF1-215	ENST00000487401	KANSL3	Q9P2N6	904 aa		13.86	□□□□□ -0.19
SREBF1-215	ENST00000487401	MUTYH	Q9UIF7	546 aa		13.86	□□□□□ -0.19
SREBF1-215	ENST00000487401	ARIH1	Q9Y4X5	557 aa	Predicted RBP	13.86	□□□□□ -0.19
SREBF1-215	ENST00000487401	NCOR1	O75376	2440 aa		13.85	□□□□□ -0.19
SREBF1-215	ENST00000487401	MEIS3P2	A8K0S8	358 aa		13.85	□□□□□ -0.19
SREBF1-215	ENST00000487401	LOC730098	B7Z3J9	87 aa		13.85	□□□□□ -0.19
SREBF1-215	ENST00000487401	INO80B-WBP1	J3KQ70	363 aa		13.85	□□□□□ -0.19
SREBF1-215	ENST00000487401	ALDH2	P05091	517 aa		13.85	□□□□□ -0.19
SREBF1-215	ENST00000487401	XRCC6	P12956	609 aa	Known RBP eCLIP	13.85	□□□□□ -0.19
SREBF1-215	ENST00000487401	AXL	P30530	894 aa		13.85	□□□□□ -0.19
SREBF1-215	ENST00000487401	PLA2G5	P39877	138 aa		13.85	□□□□□ -0.19
SREBF1-215	ENST00000487401	PTEN	P60484	403 aa		13.85	□□□□□ -0.19
SREBF1-215	ENST00000487401	GNL2	Q13823	731 aa	Known RBP	13.85	□□□□□ -0.19

Retrieved 100 of 20,778 RNA–protein pairs in 59.7 ms