RNA–Protein interactions for RNA: ENST00000485955.1

VPS41-213, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 571 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-213ENST00000485955 SLC5A5Q92911 643 aa5.62□□□□□ -1.51
VPS41-213ENST00000485955 HIST1H2AHQ96KK5 128 aa5.62□□□□□ -1.51
VPS41-213ENST00000485955 HIST1H2AJQ99878 128 aa5.62□□□□□ -1.51
VPS41-213ENST00000485955 FDXACB1Q9BRP7 624 aaPredicted RBP5.62□□□□□ -1.51
VPS41-213ENST00000485955 IL23AQ9NPF7 189 aa5.62□□□□□ -1.51
VPS41-213ENST00000485955 ING3Q9NXR8 418 aa5.62□□□□□ -1.51
VPS41-213ENST00000485955 PCDHB6Q9Y5E3 794 aa5.62□□□□□ -1.51
VPS41-213ENST00000485955 CAPN14A8MX76 684 aa5.61□□□□□ -1.51
VPS41-213ENST00000485955 MAFGO15525 162 aa5.61□□□□□ -1.51
VPS41-213ENST00000485955 AKAP8O43823 692 aaKnown RBP5.61□□□□□ -1.51
VPS41-213ENST00000485955 CLEC2LP0C7M8 214 aa5.61□□□□□ -1.51
VPS41-213ENST00000485955 TACR2P21452 398 aa5.61□□□□□ -1.51
VPS41-213ENST00000485955 MANFP55145 182 aaKnown RBP5.61□□□□□ -1.51
VPS41-213ENST00000485955 PDCD1Q15116 288 aa5.61□□□□□ -1.51
VPS41-213ENST00000485955 IGFL4Q6B9Z1 124 aa5.61□□□□□ -1.51
VPS41-213ENST00000485955 FRMD7Q6ZUT3 714 aa5.61□□□□□ -1.51
VPS41-213ENST00000485955 DDX46Q7L014 1031 aaKnown RBP5.61□□□□□ -1.51
VPS41-213ENST00000485955 C11orf74Q86VG3 221 aa5.61□□□□□ -1.51
VPS41-213ENST00000485955 C1orf210Q8IVY1 113 aa5.61□□□□□ -1.51
VPS41-213ENST00000485955 SLC16A11Q8NCK7 471 aa5.61□□□□□ -1.51
VPS41-213ENST00000485955 GAB3Q8WWW8 586 aa5.61□□□□□ -1.51
VPS41-213ENST00000485955 FERMT2Q96AC1 680 aa5.61□□□□□ -1.51
VPS41-213ENST00000485955 ZNF503Q96F45 646 aa5.61□□□□□ -1.51
VPS41-213ENST00000485955 SCAND2PQ9GZW5 306 aaPredicted RBP5.61□□□□□ -1.51
VPS41-213ENST00000485955 PPP2R3BQ9Y5P8 575 aa5.61□□□□□ -1.51
VPS41-213ENST00000485955 KDM1AO60341 852 aa5.6□□□□□ -1.51
VPS41-213ENST00000485955 STC2O76061 302 aa5.6□□□□□ -1.51
VPS41-213ENST00000485955 FSBPO95073 299 aa5.6□□□□□ -1.51
VPS41-213ENST00000485955 LY86O95711 162 aa5.6□□□□□ -1.51
VPS41-213ENST00000485955 JUNP05412 331 aaKnown RBP5.6□□□□□ -1.51
VPS41-213ENST00000485955 C1SP09871 688 aa5.6□□□□□ -1.51
VPS41-213ENST00000485955 ACRV1P26436 265 aa5.6□□□□□ -1.51
VPS41-213ENST00000485955 MASP1P48740 699 aa5.6□□□□□ -1.51
VPS41-213ENST00000485955 HHEXQ03014 270 aa5.6□□□□□ -1.51
VPS41-213ENST00000485955 STRN3Q13033 797 aa5.6□□□□□ -1.51
VPS41-213ENST00000485955 TRIM25Q14258 630 aaKnown RBP5.6□□□□□ -1.51
VPS41-213ENST00000485955 KRT40Q6A162 431 aa5.6□□□□□ -1.51
VPS41-213ENST00000485955 RASSF3Q86WH2 238 aa5.6□□□□□ -1.51
VPS41-213ENST00000485955 SLC41A1Q8IVJ1 513 aa5.6□□□□□ -1.51
VPS41-213ENST00000485955 CMTM4Q8IZR5 234 aa5.6□□□□□ -1.51
VPS41-213ENST00000485955 CDYL2Q8N8U2 506 aa5.6□□□□□ -1.51
VPS41-213ENST00000485955 USP7Q93009 1102 aa5.6□□□□□ -1.51
VPS41-213ENST00000485955 UIMC1Q96RL1 719 aa5.6□□□□□ -1.51
VPS41-213ENST00000485955 MPHOSPH9Q99550 1183 aa5.6□□□□□ -1.51
VPS41-213ENST00000485955 TCF25Q9BQ70 676 aa5.6□□□□□ -1.51
VPS41-213ENST00000485955 C14orf93Q9H972 538 aaKnown RBP5.6□□□□□ -1.51
VPS41-213ENST00000485955 NCDNQ9UBB6 729 aa5.6□□□□□ -1.51
VPS41-213ENST00000485955 RCAN3Q9UKA8 241 aa5.6□□□□□ -1.51
VPS41-213ENST00000485955 TMA7Q9Y2S6 64 aaKnown RBP5.6□□□□□ -1.51
VPS41-213ENST00000485955 NUMBLQ9Y6R0 609 aa5.6□□□□□ -1.51
VPS41-213ENST00000485955 ST20-MTHFSA0A0A6YYL1 179 aa5.59□□□□□ -1.51
VPS41-213ENST00000485955 RAB11FIP3O75154 756 aa5.59□□□□□ -1.51
VPS41-213ENST00000485955 SEC24DO94855 1032 aaPredicted RBP5.59□□□□□ -1.51
VPS41-213ENST00000485955 RRP1BQ14684 758 aaKnown RBP5.59□□□□□ -1.51
VPS41-213ENST00000485955 MAN2A1Q16706 1144 aa5.59□□□□□ -1.51
VPS41-213ENST00000485955 PITRM1Q5JRX3 1037 aa5.59□□□□□ -1.51
VPS41-213ENST00000485955 MIIPQ5JXC2 388 aa5.59□□□□□ -1.51
VPS41-213ENST00000485955 Q6ZRM9 215 aa5.59□□□□□ -1.51
VPS41-213ENST00000485955 CLRN3Q8NCR9 226 aa5.59□□□□□ -1.51
VPS41-213ENST00000485955 IFT22Q9H7X7 185 aa5.59□□□□□ -1.51
VPS41-213ENST00000485955 TOPORSQ9NS56 1045 aaPredicted RBP5.59□□□□□ -1.51
VPS41-213ENST00000485955 EVLQ9UI08 416 aaPredicted RBP5.59□□□□□ -1.51
VPS41-213ENST00000485955 PRSS50Q9UI38 385 aa5.59□□□□□ -1.51
VPS41-213ENST00000485955 NOC2LQ9Y3T9 749 aaKnown RBP5.59□□□□□ -1.51
VPS41-213ENST00000485955 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP5.58□□□□□ -1.52
VPS41-213ENST00000485955 NPIPB8E9PQR5 432 aa5.58□□□□□ -1.52
VPS41-213ENST00000485955 ALDH1A2O94788 518 aa5.58□□□□□ -1.52
VPS41-213ENST00000485955 CFBP00751 764 aa5.58□□□□□ -1.52
VPS41-213ENST00000485955 ACVRL1P37023 503 aa5.58□□□□□ -1.52
VPS41-213ENST00000485955 SCNN1GP51170 649 aa5.58□□□□□ -1.52
VPS41-213ENST00000485955 ELAVL1Q15717 326 aaKnown RBP5.58□□□□□ -1.52
VPS41-213ENST00000485955 CT83Q5H943 113 aa5.58□□□□□ -1.52
VPS41-213ENST00000485955 FKBP15Q5T1M5 1219 aa5.58□□□□□ -1.52
VPS41-213ENST00000485955 CCDC62Q6P9F0 684 aa5.58□□□□□ -1.52
VPS41-213ENST00000485955 CMIPQ8IY22 773 aa5.58□□□□□ -1.52
VPS41-213ENST00000485955 ELOA2Q8IYF1 753 aaPredicted RBP5.58□□□□□ -1.52
VPS41-213ENST00000485955 THEMISQ8N1K5 641 aaPredicted RBP5.58□□□□□ -1.52
VPS41-213ENST00000485955 MSL3Q8N5Y2 521 aaKnown RBP5.58□□□□□ -1.52
VPS41-213ENST00000485955 ZNF512Q96ME7 567 aaPredicted RBP5.58□□□□□ -1.52
VPS41-213ENST00000485955 TTC1Q99614 292 aa5.58□□□□□ -1.52
VPS41-213ENST00000485955 ZNF341Q9BYN7 854 aa5.58□□□□□ -1.52
VPS41-213ENST00000485955 CAAP1Q9H8G2 361 aa5.58□□□□□ -1.52
VPS41-213ENST00000485955 GIT1Q9Y2X7 761 aa5.58□□□□□ -1.52
VPS41-213ENST00000485955 HS3ST3A1Q9Y663 406 aa5.58□□□□□ -1.52
VPS41-213ENST00000485955 A0A1W2PR48 441 aa5.57□□□□□ -1.52
VPS41-213ENST00000485955 KRTAP23-1A1A580 65 aa5.57□□□□□ -1.52
VPS41-213ENST00000485955 MTSS1O43312 755 aa5.57□□□□□ -1.52
VPS41-213ENST00000485955 ZEB2O60315 1214 aa5.57□□□□□ -1.52
VPS41-213ENST00000485955 LPLP06858 475 aa5.57□□□□□ -1.52
VPS41-213ENST00000485955 PPARAQ07869 468 aa5.57□□□□□ -1.52
VPS41-213ENST00000485955 MGAT5Q09328 741 aa5.57□□□□□ -1.52
VPS41-213ENST00000485955 ZFPM1Q8IX07 1006 aa5.57□□□□□ -1.52
VPS41-213ENST00000485955 UNC5BQ8IZJ1 945 aa5.57□□□□□ -1.52
VPS41-213ENST00000485955 CACTINQ8WUQ7 758 aaKnown RBP5.57□□□□□ -1.52
VPS41-213ENST00000485955 MIEF2Q96C03 454 aa5.57□□□□□ -1.52
VPS41-213ENST00000485955 EAF2Q96CJ1 260 aaPredicted RBP5.57□□□□□ -1.52
VPS41-213ENST00000485955 PLEKHG4BQ96PX9 1271 aa5.57□□□□□ -1.52
VPS41-213ENST00000485955 ENKD1Q9H0I2 346 aa5.57□□□□□ -1.52
VPS41-213ENST00000485955 SLKQ9H2G2 1235 aaPredicted RBP5.57□□□□□ -1.52
VPS41-213ENST00000485955 VTA1Q9NP79 307 aa5.57□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms