RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 TRIM8Q9BZR9 551 aa4.73□□□□□ -1.65
VPS50-216ENST00000484954 CSRNP2Q9H175 543 aa4.73□□□□□ -1.65
VPS50-216ENST00000484954 XPO5Q9HAV4 1204 aaKnown RBP eCLIP4.73□□□□□ -1.65
VPS50-216ENST00000484954 MSL2Q9HCI7 577 aa4.73□□□□□ -1.65
VPS50-216ENST00000484954 IL23AQ9NPF7 189 aa4.73□□□□□ -1.65
VPS50-216ENST00000484954 MYPNQ86TC9 1320 aa4.72□□□□□ -1.65
VPS50-216ENST00000484954 GOLGA8BA8MQT2 603 aa4.72□□□□□ -1.65
VPS50-216ENST00000484954 PDE8AO60658 829 aa4.72□□□□□ -1.65
VPS50-216ENST00000484954 FKBP9O95302 570 aa4.72□□□□□ -1.65
VPS50-216ENST00000484954 CFBP00751 764 aa4.72□□□□□ -1.65
VPS50-216ENST00000484954 VSIG10L2P0DP72 767 aa4.72□□□□□ -1.65
VPS50-216ENST00000484954 GAAP10253 952 aa4.72□□□□□ -1.65
VPS50-216ENST00000484954 LSSP48449 732 aa4.72□□□□□ -1.65
VPS50-216ENST00000484954 SCNN1BP51168 640 aa4.72□□□□□ -1.65
VPS50-216ENST00000484954 SCNN1GP51170 649 aa4.72□□□□□ -1.65
VPS50-216ENST00000484954 IL2P60568 153 aa4.72□□□□□ -1.65
VPS50-216ENST00000484954 CD69Q07108 199 aa4.72□□□□□ -1.65
VPS50-216ENST00000484954 TERF2Q15554 542 aa4.72□□□□□ -1.65
VPS50-216ENST00000484954 FAM111BQ6SJ93 734 aa4.72□□□□□ -1.65
VPS50-216ENST00000484954 FKBP9P1Q75LS8 142 aa4.72□□□□□ -1.65
VPS50-216ENST00000484954 ZZZ3Q8IYH5 903 aa4.72□□□□□ -1.65
VPS50-216ENST00000484954 CACTINQ8WUQ7 758 aaKnown RBP4.72□□□□□ -1.65
VPS50-216ENST00000484954 NAF1Q96HR8 494 aaKnown RBP4.72□□□□□ -1.65
VPS50-216ENST00000484954 EMC7Q9NPA0 242 aa4.72□□□□□ -1.65
VPS50-216ENST00000484954 ING3Q9NXR8 418 aa4.72□□□□□ -1.65
VPS50-216ENST00000484954 USP35Q9P2H5 1018 aa4.72□□□□□ -1.65
VPS50-216ENST00000484954 NCDNQ9UBB6 729 aa4.72□□□□□ -1.65
VPS50-216ENST00000484954 PPP2R3BQ9Y5P8 575 aa4.72□□□□□ -1.65
VPS50-216ENST00000484954 PRSS38A1L453 326 aa4.71□□□□□ -1.66
VPS50-216ENST00000484954 PFKMP08237 780 aa4.71□□□□□ -1.66
VPS50-216ENST00000484954 CLEC2LP0C7M8 214 aa4.71□□□□□ -1.66
VPS50-216ENST00000484954 KIR2DL3P43628 341 aa4.71□□□□□ -1.66
VPS50-216ENST00000484954 ID4P47928 161 aa4.71□□□□□ -1.66
VPS50-216ENST00000484954 GYS2P54840 703 aa4.71□□□□□ -1.66
VPS50-216ENST00000484954 PHC1P78364 1004 aa4.71□□□□□ -1.66
VPS50-216ENST00000484954 PTH1RQ03431 593 aa4.71□□□□□ -1.66
VPS50-216ENST00000484954 RRP1BQ14684 758 aaKnown RBP4.71□□□□□ -1.66
VPS50-216ENST00000484954 FAM214AQ32MH5 1076 aa4.71□□□□□ -1.66
VPS50-216ENST00000484954 GAGE13Q4V321 117 aa4.71□□□□□ -1.66
VPS50-216ENST00000484954 PLEKHG4Q58EX7 1191 aa4.71□□□□□ -1.66
VPS50-216ENST00000484954 FNDC7Q5VTL7 733 aa4.71□□□□□ -1.66
VPS50-216ENST00000484954 GIMAP6Q6P9H5 292 aa4.71□□□□□ -1.66
VPS50-216ENST00000484954 ESPNLQ6ZVH7 1005 aa4.71□□□□□ -1.66
VPS50-216ENST00000484954 CXorf67Q86X51 503 aaPredicted RBP4.71□□□□□ -1.66
VPS50-216ENST00000484954 LYSMD2Q8IV50 215 aa4.71□□□□□ -1.66
VPS50-216ENST00000484954 PASD1Q8IV76 773 aa4.71□□□□□ -1.66
VPS50-216ENST00000484954 UBR7Q8N806 425 aa4.71□□□□□ -1.66
VPS50-216ENST00000484954 ZNF610Q8N9Z0 462 aa4.71□□□□□ -1.66
VPS50-216ENST00000484954 OR2W6PQ8NHA6 318 aa4.71□□□□□ -1.66
VPS50-216ENST00000484954 PPP1R14CQ8TAE6 165 aa4.71□□□□□ -1.66
VPS50-216ENST00000484954 PLEKHG4BQ96PX9 1271 aa4.71□□□□□ -1.66
VPS50-216ENST00000484954 ANO3Q9BYT9 981 aa4.71□□□□□ -1.66
VPS50-216ENST00000484954 CEP72Q9P209 647 aa4.71□□□□□ -1.66
VPS50-216ENST00000484954 TMPRSS11EQ9UL52 423 aa4.71□□□□□ -1.66
VPS50-216ENST00000484954 USP18Q9UMW8 372 aa4.71□□□□□ -1.66
VPS50-216ENST00000484954 PCDHB6Q9Y5E3 794 aa4.71□□□□□ -1.66
VPS50-216ENST00000484954 KRTAP23-1A1A580 65 aa4.7□□□□□ -1.66
VPS50-216ENST00000484954 NARSO43776 548 aaKnown RBP4.7□□□□□ -1.66
VPS50-216ENST00000484954 LY86O95711 162 aa4.7□□□□□ -1.66
VPS50-216ENST00000484954 HHEXQ03014 270 aa4.7□□□□□ -1.66
VPS50-216ENST00000484954 DPTQ07507 201 aa4.7□□□□□ -1.66
VPS50-216ENST00000484954 TRIM25Q14258 630 aaKnown RBP4.7□□□□□ -1.66
VPS50-216ENST00000484954 ELAVL1Q15717 326 aaKnown RBP4.7□□□□□ -1.66
VPS50-216ENST00000484954 GPR158Q5T848 1215 aa4.7□□□□□ -1.66
VPS50-216ENST00000484954 BROXQ5VW32 411 aa4.7□□□□□ -1.66
VPS50-216ENST00000484954 C1QL3Q5VWW1 255 aa4.7□□□□□ -1.66
VPS50-216ENST00000484954 KRT40Q6A162 431 aa4.7□□□□□ -1.66
VPS50-216ENST00000484954 STRA8Q7Z7C7 330 aa4.7□□□□□ -1.66
VPS50-216ENST00000484954 RNF180Q86T96 592 aa4.7□□□□□ -1.66
VPS50-216ENST00000484954 NOP9Q86U38 636 aaKnown RBP4.7□□□□□ -1.66
VPS50-216ENST00000484954 ELOA2Q8IYF1 753 aaPredicted RBP4.7□□□□□ -1.66
VPS50-216ENST00000484954 AHI1Q8N157 1196 aa4.7□□□□□ -1.66
VPS50-216ENST00000484954 MSL3Q8N5Y2 521 aaKnown RBP4.7□□□□□ -1.66
VPS50-216ENST00000484954 FERMT2Q96AC1 680 aa4.7□□□□□ -1.66
VPS50-216ENST00000484954 TCF25Q9BQ70 676 aa4.7□□□□□ -1.66
VPS50-216ENST00000484954 OSBPL6Q9BZF3 934 aa4.7□□□□□ -1.66
VPS50-216ENST00000484954 C14orf93Q9H972 538 aaKnown RBP4.7□□□□□ -1.66
VPS50-216ENST00000484954 RCAN3Q9UKA8 241 aa4.7□□□□□ -1.66
VPS50-216ENST00000484954 GIT1Q9Y2X7 761 aa4.7□□□□□ -1.66
VPS50-216ENST00000484954 A0A087X1B8 175 aa4.69□□□□□ -1.66
VPS50-216ENST00000484954 NEMP1O14524 444 aa4.69□□□□□ -1.66
VPS50-216ENST00000484954 DAPK3O43293 454 aa4.69□□□□□ -1.66
VPS50-216ENST00000484954 KDM1AO60341 852 aa4.69□□□□□ -1.66
VPS50-216ENST00000484954 SEC24DO94855 1032 aaPredicted RBP4.69□□□□□ -1.66
VPS50-216ENST00000484954 JUNP05412 331 aaKnown RBP4.69□□□□□ -1.66
VPS50-216ENST00000484954 BPIP17213 487 aa4.69□□□□□ -1.66
VPS50-216ENST00000484954 LSP1P33241 339 aa4.69□□□□□ -1.66
VPS50-216ENST00000484954 RABGGTBP53611 331 aa4.69□□□□□ -1.66
VPS50-216ENST00000484954 PTTG1IPP53801 180 aa4.69□□□□□ -1.66
VPS50-216ENST00000484954 MANFP55145 182 aaKnown RBP4.69□□□□□ -1.66
VPS50-216ENST00000484954 SLC25A3Q00325 362 aa4.69□□□□□ -1.66
VPS50-216ENST00000484954 SART3Q15020 963 aaKnown RBP4.69□□□□□ -1.66
VPS50-216ENST00000484954 PDCD1Q15116 288 aa4.69□□□□□ -1.66
VPS50-216ENST00000484954 DDB1Q16531 1140 aa4.69□□□□□ -1.66
VPS50-216ENST00000484954 LSM12Q3MHD2 195 aaKnown RBP4.69□□□□□ -1.66
VPS50-216ENST00000484954 FKBP15Q5T1M5 1219 aa4.69□□□□□ -1.66
VPS50-216ENST00000484954 THNSL2Q86YJ6 484 aa4.69□□□□□ -1.66
VPS50-216ENST00000484954 SLC41A1Q8IVJ1 513 aa4.69□□□□□ -1.66
VPS50-216ENST00000484954 SLC5A5Q92911 643 aa4.69□□□□□ -1.66
VPS50-216ENST00000484954 MIEF2Q96C03 454 aa4.69□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms