RNA–Protein interactions for RNA: ENST00000478938.1

SDF4-206, Transcript of stromal cell derived factor 4, humanhuman

TSL 2

Gene SDF4, Length 2,591 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF4-206ENST00000478938 ENAHQ8N8S7 591 aaPredicted RBP22.8■■□□□ 1.24
SDF4-206ENST00000478938 GLIS3Q8NEA6 775 aa22.8■■□□□ 1.24
SDF4-206ENST00000478938 WASF2Q9Y6W5 498 aa22.8■■□□□ 1.24
SDF4-206ENST00000478938 ABCB11O95342 1321 aa22.79■■□□□ 1.24
SDF4-206ENST00000478938 CNTNAP5Q8WYK1 1306 aa22.79■■□□□ 1.24
SDF4-206ENST00000478938 MAPK13O15264 365 aa22.79■■□□□ 1.24
SDF4-206ENST00000478938 GSTA3Q16772 222 aa22.79■■□□□ 1.24
SDF4-206ENST00000478938 CABP7Q86V35 215 aa22.79■■□□□ 1.24
SDF4-206ENST00000478938 ZBTB8BQ8NAP8 495 aaPredicted RBP22.79■■□□□ 1.24
SDF4-206ENST00000478938 MPP4Q96JB8 637 aa22.79■■□□□ 1.24
SDF4-206ENST00000478938 USP40Q9NVE5 1235 aa22.79■■□□□ 1.24
SDF4-206ENST00000478938 LARSQ9P2J5 1176 aaKnown RBP22.79■■□□□ 1.24
SDF4-206ENST00000478938 MTRF1LQ9UGC7 380 aaKnown RBP22.79■■□□□ 1.24
SDF4-206ENST00000478938 NAGPAQ9UK23 515 aa22.79■■□□□ 1.24
SDF4-206ENST00000478938 TIAM2Q8IVF5 1701 aa22.79■■□□□ 1.24
SDF4-206ENST00000478938 FAM187AA6NFU0 413 aa22.79■■□□□ 1.24
SDF4-206ENST00000478938 PSMG1O95456 288 aa22.79■■□□□ 1.24
SDF4-206ENST00000478938 PLCG2P16885 1265 aa22.79■■□□□ 1.24
SDF4-206ENST00000478938 RASSF2P50749 326 aa22.79■■□□□ 1.24
SDF4-206ENST00000478938 LRRC41Q15345 812 aa22.79■■□□□ 1.24
SDF4-206ENST00000478938 ALKBH5Q6P6C2 394 aaKnown RBP22.79■■□□□ 1.24
SDF4-206ENST00000478938 MAGEB6Q8N7X4 407 aa22.79■■□□□ 1.24
SDF4-206ENST00000478938 GRAMD1AQ96CP6 724 aa22.79■■□□□ 1.24
SDF4-206ENST00000478938 NMD3Q96D46 503 aaKnown RBP22.79■■□□□ 1.24
SDF4-206ENST00000478938 NR1H4Q96RI1 486 aaPredicted RBP22.79■■□□□ 1.24
SDF4-206ENST00000478938 CADM1Q9BY67 442 aaKnown RBP22.79■■□□□ 1.24
SDF4-206ENST00000478938 CIDEBQ9UHD4 219 aa22.79■■□□□ 1.24
SDF4-206ENST00000478938 UBR1Q8IWV7 1749 aa22.78■■□□□ 1.24
SDF4-206ENST00000478938 TPD52L2O43399 206 aaKnown RBP22.78■■□□□ 1.24
SDF4-206ENST00000478938 VAV1P15498 845 aa22.78■■□□□ 1.24
SDF4-206ENST00000478938 SERPINB3P29508 390 aa22.78■■□□□ 1.24
SDF4-206ENST00000478938 HPCAP84074 193 aa22.78■■□□□ 1.24
SDF4-206ENST00000478938 CDR2Q01850 454 aa22.78■■□□□ 1.24
SDF4-206ENST00000478938 TAF1BQ53T94 588 aaPredicted RBP22.78■■□□□ 1.24
SDF4-206ENST00000478938 SH2D4BQ5SQS7 431 aa22.78■■□□□ 1.24
SDF4-206ENST00000478938 RPL26L1Q9UNX3 145 aaKnown RBP22.78■■□□□ 1.24
SDF4-206ENST00000478938 SLIT3O75094 1523 aa22.78■■□□□ 1.24
SDF4-206ENST00000478938 FGFR1OPO95684 399 aaKnown RBP22.78■■□□□ 1.24
SDF4-206ENST00000478938 PTPN4P29074 926 aa22.78■■□□□ 1.24
SDF4-206ENST00000478938 DNAJC3Q13217 504 aa22.78■■□□□ 1.24
SDF4-206ENST00000478938 TXNRD1Q16881 649 aa22.78■■□□□ 1.24
SDF4-206ENST00000478938 MARK2Q7KZI7 788 aaKnown RBP22.78■■□□□ 1.24
SDF4-206ENST00000478938 SRBD1Q8N5C6 995 aaKnown RBP22.78■■□□□ 1.24
SDF4-206ENST00000478938 LZICQ8WZA0 190 aa22.78■■□□□ 1.24
SDF4-206ENST00000478938 TLE6Q9H808 572 aa22.78■■□□□ 1.24
SDF4-206ENST00000478938 PHF8Q9UPP1 1060 aa22.78■■□□□ 1.24
SDF4-206ENST00000478938 DDX3XO00571 662 aaKnown RBP eCLIP22.77■■□□□ 1.241e-9■□□□□ 10
SDF4-206ENST00000478938 LMNB2Q03252 620 aa22.77■■□□□ 1.24
SDF4-206ENST00000478938 TMTC3Q6ZXV5 915 aa22.77■■□□□ 1.24
SDF4-206ENST00000478938 SLCO1B3Q9NPD5 702 aa22.77■■□□□ 1.24
SDF4-206ENST00000478938 ANKRD63C9JTQ0 380 aa22.77■■□□□ 1.24
SDF4-206ENST00000478938 MAP7Q14244 749 aa22.77■■□□□ 1.24
SDF4-206ENST00000478938 AADACL2Q6P093 401 aa22.77■■□□□ 1.24
SDF4-206ENST00000478938 ARHGAP27Q6ZUM4 889 aa22.77■■□□□ 1.24
SDF4-206ENST00000478938 CATIPQ7Z7H3 387 aa22.77■■□□□ 1.24
SDF4-206ENST00000478938 WDR66Q8TBY9 1149 aa22.77■■□□□ 1.24
SDF4-206ENST00000478938 STK32BQ9NY57 414 aa22.77■■□□□ 1.24
SDF4-206ENST00000478938 RASAL2Q9UJF2 1139 aa22.77■■□□□ 1.24
SDF4-206ENST00000478938 TRAFD1O14545 582 aaPredicted RBP22.76■■□□□ 1.23
SDF4-206ENST00000478938 SNRPA1P09661 255 aaKnown RBP22.76■■□□□ 1.23
SDF4-206ENST00000478938 SCG2P13521 617 aa22.76■■□□□ 1.23
SDF4-206ENST00000478938 RARGP13631 454 aa22.76■■□□□ 1.23
SDF4-206ENST00000478938 DYMQ7RTS9 669 aa22.76■■□□□ 1.23
SDF4-206ENST00000478938 LCORLQ8N3X6 602 aa22.76■■□□□ 1.23
SDF4-206ENST00000478938 SH3RF3Q8TEJ3 882 aaPredicted RBP22.76■■□□□ 1.23
SDF4-206ENST00000478938 ROPN1BQ9BZX4 212 aaPredicted RBP22.76■■□□□ 1.23
SDF4-206ENST00000478938 MIS12Q9H081 205 aa22.76■■□□□ 1.23
SDF4-206ENST00000478938 ROPN1Q9HAT0 212 aaPredicted RBP22.76■■□□□ 1.23
SDF4-206ENST00000478938 AMFRQ9UKV5 643 aa22.76■■□□□ 1.23
SDF4-206ENST00000478938 VIL1P09327 827 aaKnown RBP22.76■■□□□ 1.23
SDF4-206ENST00000478938 PTGIRP43119 386 aa22.76■■□□□ 1.23
SDF4-206ENST00000478938 TMED1Q13445 227 aa22.76■■□□□ 1.23
SDF4-206ENST00000478938 DHX34Q14147 1143 aaKnown RBP22.76■■□□□ 1.23
SDF4-206ENST00000478938 PPP2R5BQ15173 497 aa22.76■■□□□ 1.23
SDF4-206ENST00000478938 CYP4X1Q8N118 509 aa22.76■■□□□ 1.23
SDF4-206ENST00000478938 WDR60Q8WVS4 1066 aa22.76■■□□□ 1.23
SDF4-206ENST00000478938 NKIRAS1Q9NYS0 192 aa22.76■■□□□ 1.23
SDF4-206ENST00000478938 TBK1Q9UHD2 729 aa22.76■■□□□ 1.23
SDF4-206ENST00000478938 PPP1R9AQ9ULJ8 1098 aa22.76■■□□□ 1.23
SDF4-206ENST00000478938 TTC7AQ9ULT0 858 aaPredicted RBP22.76■■□□□ 1.23
SDF4-206ENST00000478938 DCTN3O75935 186 aa22.75■■□□□ 1.23
SDF4-206ENST00000478938 ACTN1P12814 892 aa22.75■■□□□ 1.23
SDF4-206ENST00000478938 MOGSQ13724 837 aa22.75■■□□□ 1.23
SDF4-206ENST00000478938 RRP1BQ14684 758 aaKnown RBP22.75■■□□□ 1.23
SDF4-206ENST00000478938 LARP7Q4G0J3 582 aaKnown RBP eCLIP22.75■■□□□ 1.23
SDF4-206ENST00000478938 METTL24Q5JXM2 366 aa22.75■■□□□ 1.23
SDF4-206ENST00000478938 IFIT1BQ5T764 474 aaKnown RBP22.75■■□□□ 1.23
SDF4-206ENST00000478938 METTL14Q9HCE5 456 aaKnown RBP22.75■■□□□ 1.23
SDF4-206ENST00000478938 OSGEPQ9NPF4 335 aa22.75■■□□□ 1.23
SDF4-206ENST00000478938 PHTF1Q9UMS5 762 aa22.75■■□□□ 1.23
SDF4-206ENST00000478938 MINDY4BA8MYZ0 360 aa22.75■■□□□ 1.23
SDF4-206ENST00000478938 MAGEB3O15480 346 aa22.75■■□□□ 1.23
SDF4-206ENST00000478938 DDX3YO15523 660 aaKnown RBP22.75■■□□□ 1.23
SDF4-206ENST00000478938 OR6B1O95007 311 aa22.75■■□□□ 1.23
SDF4-206ENST00000478938 PHKA1P46020 1223 aa22.75■■□□□ 1.23
SDF4-206ENST00000478938 DRG2P55039 364 aaKnown RBP22.75■■□□□ 1.23
SDF4-206ENST00000478938 PPP2R5CQ13362 524 aa22.75■■□□□ 1.23
SDF4-206ENST00000478938 BTG3Q14201 252 aaPredicted RBP22.75■■□□□ 1.23
SDF4-206ENST00000478938 COBLL1Q53SF7 1204 aa22.75■■□□□ 1.23
SDF4-206ENST00000478938 C10orf76Q5T2E6 689 aa22.75■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms