RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 CCND2P30279 289 aa5.57□□□□□ -1.52
USP4-209ENST00000475873 SLC11A1P49279 550 aa5.57□□□□□ -1.52
USP4-209ENST00000475873 ALDH7A1P49419 539 aaKnown RBP5.57□□□□□ -1.52
USP4-209ENST00000475873 CCR3P51677 355 aa5.57□□□□□ -1.52
USP4-209ENST00000475873 SLC35G1Q2M3R5 365 aa5.57□□□□□ -1.52
USP4-209ENST00000475873 CEP85Q6P2H3 762 aa5.57□□□□□ -1.52
USP4-209ENST00000475873 ZNF852Q6ZMS4 543 aa5.57□□□□□ -1.52
USP4-209ENST00000475873 Q6ZS52 159 aa5.57□□□□□ -1.52
USP4-209ENST00000475873 TAS1R1Q7RTX1 841 aa5.57□□□□□ -1.52
USP4-209ENST00000475873 LONP2Q86WA8 852 aa5.57□□□□□ -1.52
USP4-209ENST00000475873 MCF2L2Q86YR7 1114 aa5.57□□□□□ -1.52
USP4-209ENST00000475873 KIAA0319LQ8IZA0 1049 aa5.57□□□□□ -1.52
USP4-209ENST00000475873 ADGRF4Q8IZF3 695 aa5.57□□□□□ -1.52
USP4-209ENST00000475873 CHCHD4Q8N4Q1 142 aa5.57□□□□□ -1.52
USP4-209ENST00000475873 ITFG1Q8TB96 612 aa5.57□□□□□ -1.52
USP4-209ENST00000475873 MDM1Q8TC05 714 aa5.57□□□□□ -1.52
USP4-209ENST00000475873 SLC39A7Q92504 469 aa5.57□□□□□ -1.52
USP4-209ENST00000475873 APPBP2Q92624 585 aa5.57□□□□□ -1.52
USP4-209ENST00000475873 FGF13Q92913 245 aa5.57□□□□□ -1.52
USP4-209ENST00000475873 NELL2Q99435 816 aa5.57□□□□□ -1.52
USP4-209ENST00000475873 NRDE2Q9H7Z3 1164 aa5.57□□□□□ -1.52
USP4-209ENST00000475873 RBM12Q9NTZ6 932 aaKnown RBP5.57□□□□□ -1.52
USP4-209ENST00000475873 RTEL1Q9NZ71 1219 aa5.57□□□□□ -1.52
USP4-209ENST00000475873 CDH7Q9ULB5 785 aa5.57□□□□□ -1.52
USP4-209ENST00000475873 BAZ2BQ9UIF8 2168 aaKnown RBP5.57□□□□□ -1.52
USP4-209ENST00000475873 NCANO14594 1321 aa5.56□□□□□ -1.52
USP4-209ENST00000475873 SMIM35A0A1B0GVV1 85 aa5.56□□□□□ -1.52
USP4-209ENST00000475873 PATL2C9JE40 543 aaKnown RBP5.56□□□□□ -1.52
USP4-209ENST00000475873 J3QKU1 62 aa5.56□□□□□ -1.52
USP4-209ENST00000475873 M0QZ92 97 aa5.56□□□□□ -1.52
USP4-209ENST00000475873 C2CD2LO14523 706 aa5.56□□□□□ -1.52
USP4-209ENST00000475873 NCAM2O15394 837 aa5.56□□□□□ -1.52
USP4-209ENST00000475873 RANBP6O60518 1105 aaKnown RBP5.56□□□□□ -1.52
USP4-209ENST00000475873 GPR32O75388 356 aa5.56□□□□□ -1.52
USP4-209ENST00000475873 PAPSS2O95340 614 aaPredicted RBP5.56□□□□□ -1.52
USP4-209ENST00000475873 EFEMP2O95967 443 aa5.56□□□□□ -1.52
USP4-209ENST00000475873 APPP05067 770 aa5.56□□□□□ -1.52
USP4-209ENST00000475873 FGRP09769 529 aa5.56□□□□□ -1.52
USP4-209ENST00000475873 KCNA2P16389 499 aa5.56□□□□□ -1.52
USP4-209ENST00000475873 CNR2P34972 360 aa5.56□□□□□ -1.52
USP4-209ENST00000475873 CXCL12P48061 93 aa5.56□□□□□ -1.52
USP4-209ENST00000475873 PXNP49023 591 aaPredicted RBP5.56□□□□□ -1.52
USP4-209ENST00000475873 AFF1P51825 1210 aaKnown RBP5.56□□□□□ -1.52
USP4-209ENST00000475873 FAM193AP78312 1265 aa5.56□□□□□ -1.52
USP4-209ENST00000475873 GIT2Q14161 759 aa5.56□□□□□ -1.52
USP4-209ENST00000475873 NEDD9Q14511 834 aa5.56□□□□□ -1.52
USP4-209ENST00000475873 KIZQ2M2Z5 673 aa5.56□□□□□ -1.52
USP4-209ENST00000475873 MTHFD1LQ6UB35 978 aa5.56□□□□□ -1.52
USP4-209ENST00000475873 PCSK4Q6UW60 755 aa5.56□□□□□ -1.52
USP4-209ENST00000475873 CYP26C1Q6V0L0 522 aa5.56□□□□□ -1.52
USP4-209ENST00000475873 CEP68Q76N32 757 aa5.56□□□□□ -1.52
USP4-209ENST00000475873 ZNF605Q86T29 641 aa5.56□□□□□ -1.52
USP4-209ENST00000475873 ZNF280BQ86YH2 543 aa5.56□□□□□ -1.52
USP4-209ENST00000475873 TMEM87AQ8NBN3 555 aa5.56□□□□□ -1.52
USP4-209ENST00000475873 RNF169Q8NCN4 708 aa5.56□□□□□ -1.52
USP4-209ENST00000475873 LOXL4Q96JB6 756 aa5.56□□□□□ -1.52
USP4-209ENST00000475873 OSMRQ99650 979 aa5.56□□□□□ -1.52
USP4-209ENST00000475873 PRKD2Q9BZL6 878 aa5.56□□□□□ -1.52
USP4-209ENST00000475873 ADAMTS10Q9H324 1103 aa5.56□□□□□ -1.52
USP4-209ENST00000475873 JMJD4Q9H9V9 463 aa5.56□□□□□ -1.52
USP4-209ENST00000475873 LMAN1LQ9HAT1 526 aa5.56□□□□□ -1.52
USP4-209ENST00000475873 MRS2Q9HD23 443 aa5.56□□□□□ -1.52
USP4-209ENST00000475873 SCUBE2Q9NQ36 999 aa5.56□□□□□ -1.52
USP4-209ENST00000475873 JADE2Q9NQC1 790 aa5.56□□□□□ -1.52
USP4-209ENST00000475873 TBC1D13Q9NVG8 400 aa5.56□□□□□ -1.52
USP4-209ENST00000475873 ERAP1Q9NZ08 941 aa5.56□□□□□ -1.52
USP4-209ENST00000475873 MRPL11Q9Y3B7 192 aaKnown RBP5.56□□□□□ -1.52
USP4-209ENST00000475873 PCDHA1Q9Y5I3 950 aa5.56□□□□□ -1.52
USP4-209ENST00000475873 C2CD3Q4AC94 2353 aa5.56□□□□□ -1.52
USP4-209ENST00000475873 ITPR3Q14573 2671 aa5.55□□□□□ -1.52
USP4-209ENST00000475873 GOLGA4Q13439 2230 aaKnown RBP5.55□□□□□ -1.52
USP4-209ENST00000475873 CREBBPQ92793 2442 aa5.55□□□□□ -1.52
USP4-209ENST00000475873 RRN3P2A6NIE6 340 aa5.55□□□□□ -1.52
USP4-209ENST00000475873 ZBTB42B2RXF5 422 aa5.55□□□□□ -1.52
USP4-209ENST00000475873 PATE3B3GLJ2 98 aa5.55□□□□□ -1.52
USP4-209ENST00000475873 B4E1Z4 1266 aa5.55□□□□□ -1.52
USP4-209ENST00000475873 F8W810 466 aa5.55□□□□□ -1.52
USP4-209ENST00000475873 ATXN7O15265 892 aaPredicted RBP5.55□□□□□ -1.52
USP4-209ENST00000475873 HOXA2O43364 376 aa5.55□□□□□ -1.52
USP4-209ENST00000475873 FIBPO43427 364 aa5.55□□□□□ -1.52
USP4-209ENST00000475873 ORC4O43929 436 aa5.55□□□□□ -1.52
USP4-209ENST00000475873 SEC24BO95487 1268 aa5.55□□□□□ -1.52
USP4-209ENST00000475873 GLUD1P00367 558 aa5.55□□□□□ -1.52
USP4-209ENST00000475873 FSHRP23945 695 aa5.55□□□□□ -1.52
USP4-209ENST00000475873 FCARP24071 287 aa5.55□□□□□ -1.52
USP4-209ENST00000475873 FGD1P98174 961 aa5.55□□□□□ -1.52
USP4-209ENST00000475873 PFKPQ01813 784 aa5.55□□□□□ -1.52
USP4-209ENST00000475873 PPP4R3BQ5MIZ7 849 aa5.55□□□□□ -1.52
USP4-209ENST00000475873 PKN3Q6P5Z2 889 aa5.55□□□□□ -1.52
USP4-209ENST00000475873 LILRA6Q6PI73 481 aa5.55□□□□□ -1.52
USP4-209ENST00000475873 GRASPQ7Z6J2 395 aaPredicted RBP5.55□□□□□ -1.52
USP4-209ENST00000475873 RAB44Q7Z6P3 723 aaPredicted RBP5.55□□□□□ -1.52
USP4-209ENST00000475873 WDR5BQ86VZ2 330 aa5.55□□□□□ -1.52
USP4-209ENST00000475873 FCHSD1Q86WN1 690 aa5.55□□□□□ -1.52
USP4-209ENST00000475873 ERC1Q8IUD2 1116 aa5.55□□□□□ -1.52
USP4-209ENST00000475873 NPAS3Q8IXF0 933 aa5.55□□□□□ -1.52
USP4-209ENST00000475873 RNF168Q8IYW5 571 aaPredicted RBP5.55□□□□□ -1.52
USP4-209ENST00000475873 ABI1Q8IZP0 508 aa5.55□□□□□ -1.52
USP4-209ENST00000475873 SPEM1Q8N4L4 309 aa5.55□□□□□ -1.52
USP4-209ENST00000475873 LPPQ93052 612 aa5.55□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms