RNA–Protein interactions for RNA: ENST00000475549.1

HDAC3-207, Transcript of histone deacetylase 3, humanhuman

TSL 2

Gene HDAC3, Length 297 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-207ENST00000475549 ZNF558Q96NG5 402 aa7.87□□□□□ -1.15
HDAC3-207ENST00000475549 SCLT1Q96NL6 688 aa7.87□□□□□ -1.15
HDAC3-207ENST00000475549 CDCA3Q99618 268 aaPredicted RBP7.87□□□□□ -1.15
HDAC3-207ENST00000475549 APOL5Q9BWW9 433 aa7.87□□□□□ -1.15
HDAC3-207ENST00000475549 XPNPEP1Q9NQW7 623 aa7.87□□□□□ -1.15
HDAC3-207ENST00000475549 BMP2KQ9NSY1 1161 aaPredicted RBP7.87□□□□□ -1.15
HDAC3-207ENST00000475549 DACT1Q9NYF0 836 aa7.87□□□□□ -1.15
HDAC3-207ENST00000475549 SPG21Q9NZD8 308 aa7.87□□□□□ -1.15
HDAC3-207ENST00000475549 ORC3Q9UBD5 711 aaPredicted RBP7.87□□□□□ -1.15
HDAC3-207ENST00000475549 CLASP2O75122 1294 aaKnown RBP7.86□□□□□ -1.15
HDAC3-207ENST00000475549 CDKL5O76039 1030 aa7.86□□□□□ -1.15
HDAC3-207ENST00000475549 DDHD2O94830 711 aa7.86□□□□□ -1.15
HDAC3-207ENST00000475549 GALTP07902 379 aa7.86□□□□□ -1.15
HDAC3-207ENST00000475549 GCFC2P16383 781 aaKnown RBP7.86□□□□□ -1.15
HDAC3-207ENST00000475549 SFPQP23246 707 aaKnown RBP eCLIP7.86□□□□□ -1.15
HDAC3-207ENST00000475549 TECP42680 631 aa7.86□□□□□ -1.15
HDAC3-207ENST00000475549 DNM2P50570 870 aa7.86□□□□□ -1.15
HDAC3-207ENST00000475549 CYP4A11Q02928 519 aa7.86□□□□□ -1.15
HDAC3-207ENST00000475549 KRT17Q04695 432 aa7.86□□□□□ -1.15
HDAC3-207ENST00000475549 LAMTOR4Q0VGL1 99 aa7.86□□□□□ -1.15
HDAC3-207ENST00000475549 EPHA7Q15375 998 aa7.86□□□□□ -1.15
HDAC3-207ENST00000475549 TWF2Q6IBS0 349 aaKnown RBP7.86□□□□□ -1.15
HDAC3-207ENST00000475549 TMC7Q7Z402 723 aa7.86□□□□□ -1.15
HDAC3-207ENST00000475549 MRPL10Q7Z7H8 261 aaKnown RBP7.86□□□□□ -1.15
HDAC3-207ENST00000475549 ABI1Q8IZP0 508 aa7.86□□□□□ -1.15
HDAC3-207ENST00000475549 NSUN7Q8NE18 718 aaKnown RBP7.86□□□□□ -1.15
HDAC3-207ENST00000475549 AUTS2Q8WXX7 1259 aa7.86□□□□□ -1.15
HDAC3-207ENST00000475549 EDAQ92838 391 aa7.86□□□□□ -1.15
HDAC3-207ENST00000475549 GTF3C6Q969F1 213 aa7.86□□□□□ -1.15
HDAC3-207ENST00000475549 DYDC2Q96IM9 177 aa7.86□□□□□ -1.15
HDAC3-207ENST00000475549 RPGRIP1Q96KN7 1286 aa7.86□□□□□ -1.15
HDAC3-207ENST00000475549 MTMR9Q96QG7 549 aa7.86□□□□□ -1.15
HDAC3-207ENST00000475549 POP1Q99575 1024 aaKnown RBP7.86□□□□□ -1.15
HDAC3-207ENST00000475549 LXNQ9BS40 222 aa7.86□□□□□ -1.15
HDAC3-207ENST00000475549 PHF7Q9BWX1 381 aaPredicted RBP7.86□□□□□ -1.15
HDAC3-207ENST00000475549 NRDE2Q9H7Z3 1164 aa7.86□□□□□ -1.15
HDAC3-207ENST00000475549 NGRNQ9NPE2 291 aaKnown RBP7.86□□□□□ -1.15
HDAC3-207ENST00000475549 ENTPD7Q9NQZ7 604 aa7.86□□□□□ -1.15
HDAC3-207ENST00000475549 AGPAT5Q9NUQ2 364 aa7.86□□□□□ -1.15
HDAC3-207ENST00000475549 FAM105AQ9NUU6 356 aa7.86□□□□□ -1.15
HDAC3-207ENST00000475549 TBC1D13Q9NVG8 400 aa7.86□□□□□ -1.15
HDAC3-207ENST00000475549 PPP4R2Q9NY27 417 aa7.86□□□□□ -1.15
HDAC3-207ENST00000475549 DNAJB4Q9UDY4 337 aa7.86□□□□□ -1.15
HDAC3-207ENST00000475549 PUF60Q9UHX1 559 aaKnown RBP7.86□□□□□ -1.15
HDAC3-207ENST00000475549 PIN4Q9Y237 131 aaKnown RBP7.86□□□□□ -1.15
HDAC3-207ENST00000475549 HCN4Q9Y3Q4 1203 aa7.86□□□□□ -1.15
HDAC3-207ENST00000475549 PCDHB2Q9Y5E7 798 aa7.86□□□□□ -1.15
HDAC3-207ENST00000475549 COL4A3BPQ9Y5P4 624 aa7.86□□□□□ -1.15
HDAC3-207ENST00000475549 LYPLA2O95372 231 aa7.85□□□□□ -1.15
HDAC3-207ENST00000475549 CXCL14O95715 111 aa7.85□□□□□ -1.15
HDAC3-207ENST00000475549 WEE2P0C1S8 567 aa7.85□□□□□ -1.15
HDAC3-207ENST00000475549 PPM1AP35813 382 aa7.85□□□□□ -1.15
HDAC3-207ENST00000475549 KRT2P35908 639 aa7.85□□□□□ -1.15
HDAC3-207ENST00000475549 SLC11A1P49279 550 aa7.85□□□□□ -1.15
HDAC3-207ENST00000475549 ALDH7A1P49419 539 aaKnown RBP7.85□□□□□ -1.15
HDAC3-207ENST00000475549 NEK4P51957 841 aa7.85□□□□□ -1.15
HDAC3-207ENST00000475549 ZXDAP98168 799 aa7.85□□□□□ -1.15
HDAC3-207ENST00000475549 EMC2Q15006 297 aa7.85□□□□□ -1.15
HDAC3-207ENST00000475549 NOMO2Q5JPE7 1267 aa7.85□□□□□ -1.15
HDAC3-207ENST00000475549 IER5LQ5T953 404 aa7.85□□□□□ -1.15
HDAC3-207ENST00000475549 NCAPH2Q6IBW4 605 aa7.85□□□□□ -1.15
HDAC3-207ENST00000475549 TRIM67Q6ZTA4 783 aa7.85□□□□□ -1.15
HDAC3-207ENST00000475549 CATSPER4Q7RTX7 472 aa7.85□□□□□ -1.15
HDAC3-207ENST00000475549 DDX53Q86TM3 631 aaKnown RBP7.85□□□□□ -1.15
HDAC3-207ENST00000475549 FERMT3Q86UX7 667 aa7.85□□□□□ -1.15
HDAC3-207ENST00000475549 TPH2Q8IWU9 490 aa7.85□□□□□ -1.15
HDAC3-207ENST00000475549 VPS52Q8N1B4 723 aa7.85□□□□□ -1.15
HDAC3-207ENST00000475549 RNF149Q8NC42 400 aa7.85□□□□□ -1.15
HDAC3-207ENST00000475549 SMG8Q8ND04 991 aaKnown RBP7.85□□□□□ -1.15
HDAC3-207ENST00000475549 SPDYE1Q8NFV5 336 aaPredicted RBP7.85□□□□□ -1.15
HDAC3-207ENST00000475549 ASAP3Q8TDY4 903 aa7.85□□□□□ -1.15
HDAC3-207ENST00000475549 SLC7A3Q8WY07 619 aa7.85□□□□□ -1.15
HDAC3-207ENST00000475549 IGSF21Q96ID5 467 aa7.85□□□□□ -1.15
HDAC3-207ENST00000475549 EIF2AK1Q9BQI3 630 aaKnown RBP7.85□□□□□ -1.15
HDAC3-207ENST00000475549 INO80BQ9C086 356 aaPredicted RBP7.85□□□□□ -1.15
HDAC3-207ENST00000475549 TMEM60Q9H2L4 133 aa7.85□□□□□ -1.15
HDAC3-207ENST00000475549 ADAM7Q9H2U9 754 aa7.85□□□□□ -1.15
HDAC3-207ENST00000475549 ZSWIM4Q9H7M6 989 aa7.85□□□□□ -1.15
HDAC3-207ENST00000475549 INPP5FQ9Y2H2 1132 aa7.85□□□□□ -1.15
HDAC3-207ENST00000475549 HCFC2Q9Y5Z7 792 aa7.85□□□□□ -1.15
HDAC3-207ENST00000475549 IRAK3Q9Y616 596 aa7.85□□□□□ -1.15
HDAC3-207ENST00000475549 RALGAPA2Q2PPJ7 1873 aa7.85□□□□□ -1.15
HDAC3-207ENST00000475549 F8W810 466 aa7.84□□□□□ -1.15
HDAC3-207ENST00000475549 LILRB3O75022 631 aa7.84□□□□□ -1.15
HDAC3-207ENST00000475549 ZC3H11AO75152 810 aaKnown RBP eCLIP7.84□□□□□ -1.15
HDAC3-207ENST00000475549 EFEMP2O95967 443 aa7.84□□□□□ -1.15
HDAC3-207ENST00000475549 SPATA31C1P0DKV0 1188 aa7.84□□□□□ -1.15
HDAC3-207ENST00000475549 XBP1P17861 261 aa7.84□□□□□ -1.15
HDAC3-207ENST00000475549 SP100P23497 879 aaPredicted RBP7.84□□□□□ -1.15
HDAC3-207ENST00000475549 ARL2P36404 184 aa7.84□□□□□ -1.15
HDAC3-207ENST00000475549 RFC5P40937 340 aa7.84□□□□□ -1.15
HDAC3-207ENST00000475549 FOSBP53539 338 aa7.84□□□□□ -1.15
HDAC3-207ENST00000475549 POLGP54098 1239 aaPredicted RBP7.84□□□□□ -1.15
HDAC3-207ENST00000475549 PTENP60484 403 aa7.84□□□□□ -1.15
HDAC3-207ENST00000475549 SMC1AQ14683 1233 aaKnown RBP7.84□□□□□ -1.15
HDAC3-207ENST00000475549 ANKRD1Q15327 319 aa7.84□□□□□ -1.15
HDAC3-207ENST00000475549 AMHR2Q16671 573 aa7.84□□□□□ -1.15
HDAC3-207ENST00000475549 XKR9Q5GH70 373 aa7.84□□□□□ -1.15
HDAC3-207ENST00000475549 GLB1LQ6UWU2 654 aa7.84□□□□□ -1.15
HDAC3-207ENST00000475549 TAS1R1Q7RTX1 841 aa7.84□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms