RNA–Protein interactions for RNA: ENST00000474047.5

VAMP4-203, Transcript of vesicle associated membrane protein 4, humanhuman

TSL 1 (best)

Gene VAMP4, Length 1,738 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP4-203ENST00000474047 AGPAT5Q9NUQ2 364 aa15.75■□□□□ 0.11
VAMP4-203ENST00000474047 MTCH2Q9Y6C9 303 aa15.75■□□□□ 0.11
VAMP4-203ENST00000474047 MRPL42Q9Y6G3 142 aaKnown RBP15.75■□□□□ 0.11
VAMP4-203ENST00000474047 KCTD17Q8N5Z5 321 aa15.74■□□□□ 0.11
VAMP4-203ENST00000474047 DEPTORQ8TB45 409 aa15.74■□□□□ 0.11
VAMP4-203ENST00000474047 KIFAP3Q92845 792 aa15.74■□□□□ 0.11
VAMP4-203ENST00000474047 PGBD4Q96DM1 585 aa15.74■□□□□ 0.11
VAMP4-203ENST00000474047 MMTAG2Q9BU76 263 aaKnown RBP15.74■□□□□ 0.11
VAMP4-203ENST00000474047 TMEM117Q9H0C3 514 aa15.74■□□□□ 0.11
VAMP4-203ENST00000474047 LMCD1Q9NZU5 365 aa15.74■□□□□ 0.11
VAMP4-203ENST00000474047 H3BNC9 293 aa15.74■□□□□ 0.11
VAMP4-203ENST00000474047 LIG1P18858 919 aa15.74■□□□□ 0.11
VAMP4-203ENST00000474047 POU3F3P20264 500 aaPredicted RBP15.74■□□□□ 0.11
VAMP4-203ENST00000474047 MARCKSP29966 332 aaPredicted RBP15.74■□□□□ 0.11
VAMP4-203ENST00000474047 AXLP30530 894 aa15.74■□□□□ 0.11
VAMP4-203ENST00000474047 LONRF3Q496Y0 759 aa15.74■□□□□ 0.11
VAMP4-203ENST00000474047 CLP1Q92989 425 aaKnown RBP15.74■□□□□ 0.11
VAMP4-203ENST00000474047 ZNF396Q96N95 335 aaPredicted RBP15.74■□□□□ 0.11
VAMP4-203ENST00000474047 C2orf40Q9H1Z8 148 aa15.74■□□□□ 0.11
VAMP4-203ENST00000474047 POLD4Q9HCU8 107 aa15.74■□□□□ 0.11
VAMP4-203ENST00000474047 FAM105AQ9NUU6 356 aa15.74■□□□□ 0.11
VAMP4-203ENST00000474047 PCDHB12Q9Y5F1 795 aa15.74■□□□□ 0.11
VAMP4-203ENST00000474047 NLRC5Q86WI3 1866 aa15.73■□□□□ 0.11
VAMP4-203ENST00000474047 SLC26A4O43511 780 aa15.73■□□□□ 0.11
VAMP4-203ENST00000474047 NOTUMQ6P988 496 aa15.73■□□□□ 0.11
VAMP4-203ENST00000474047 IFNLR1Q8IU57 520 aaPredicted RBP15.73■□□□□ 0.11
VAMP4-203ENST00000474047 TRAIPQ9BWF2 469 aa15.73■□□□□ 0.11
VAMP4-203ENST00000474047 PLVAPQ9BX97 442 aa15.73■□□□□ 0.11
VAMP4-203ENST00000474047 NFKBIZQ9BYH8 718 aa15.73■□□□□ 0.11
VAMP4-203ENST00000474047 TRIM6Q9C030 488 aaPredicted RBP15.73■□□□□ 0.11
VAMP4-203ENST00000474047 TYW1Q9NV66 732 aaKnown RBP15.73■□□□□ 0.11
VAMP4-203ENST00000474047 PCDHB2Q9Y5E7 798 aa15.73■□□□□ 0.11
VAMP4-203ENST00000474047 COL4A6Q14031 1691 aa15.73■□□□□ 0.11
VAMP4-203ENST00000474047 CHD9Q3L8U1 2897 aa15.72■□□□□ 0.11
VAMP4-203ENST00000474047 LPXNO60711 386 aa15.72■□□□□ 0.11
VAMP4-203ENST00000474047 NAMPTP43490 491 aa15.72■□□□□ 0.11
VAMP4-203ENST00000474047 MBTD1Q05BQ5 628 aa15.72■□□□□ 0.11
VAMP4-203ENST00000474047 STK38Q15208 465 aa15.72■□□□□ 0.11
VAMP4-203ENST00000474047 HYIQ5T013 277 aa15.72■□□□□ 0.11
VAMP4-203ENST00000474047 HELQQ8TDG4 1101 aa15.72■□□□□ 0.11
VAMP4-203ENST00000474047 CPB2Q96IY4 423 aa15.72■□□□□ 0.11
VAMP4-203ENST00000474047 DRC1Q96MC2 740 aa15.72■□□□□ 0.11
VAMP4-203ENST00000474047 PNMA5Q96PV4 448 aa15.72■□□□□ 0.11
VAMP4-203ENST00000474047 PRMT7Q9NVM4 692 aaPredicted RBP15.72■□□□□ 0.11
VAMP4-203ENST00000474047 RALGAPA2Q2PPJ7 1873 aa15.72■□□□□ 0.11
VAMP4-203ENST00000474047 CCDC169A6NNP5 214 aa15.71■□□□□ 0.11
VAMP4-203ENST00000474047 C5orf67F2Z3F1 127 aa15.71■□□□□ 0.11
VAMP4-203ENST00000474047 TSPAN1O60635 241 aa15.71■□□□□ 0.11
VAMP4-203ENST00000474047 HOXA11P31270 313 aaPredicted RBP15.71■□□□□ 0.11
VAMP4-203ENST00000474047 TXLNAP40222 546 aa15.71■□□□□ 0.11
VAMP4-203ENST00000474047 MAPK6Q16659 721 aa15.71■□□□□ 0.11
VAMP4-203ENST00000474047 NAALADL2Q58DX5 795 aa15.71■□□□□ 0.11
VAMP4-203ENST00000474047 RINT1Q6NUQ1 792 aa15.71■□□□□ 0.11
VAMP4-203ENST00000474047 GLB1LQ6UWU2 654 aa15.71■□□□□ 0.11
VAMP4-203ENST00000474047 KCNK18Q7Z418 384 aa15.71■□□□□ 0.11
VAMP4-203ENST00000474047 LRRC43Q8N309 656 aa15.71■□□□□ 0.11
VAMP4-203ENST00000474047 CNNM3Q8NE01 707 aa15.71■□□□□ 0.11
VAMP4-203ENST00000474047 LPPQ93052 612 aa15.71■□□□□ 0.11
VAMP4-203ENST00000474047 MRPL38Q96DV4 380 aaKnown RBP15.71■□□□□ 0.11
VAMP4-203ENST00000474047 CASD1Q96PB1 797 aa15.71■□□□□ 0.11
VAMP4-203ENST00000474047 CSRNP2Q9H175 543 aa15.71■□□□□ 0.11
VAMP4-203ENST00000474047 ZNF623O75123 536 aa15.71■□□□□ 0.1
VAMP4-203ENST00000474047 PLA2G4BP0C869 781 aa15.71■□□□□ 0.1
VAMP4-203ENST00000474047 ZSCAN22P10073 491 aaPredicted RBP15.71■□□□□ 0.1
VAMP4-203ENST00000474047 LAG3P18627 525 aa15.71■□□□□ 0.1
VAMP4-203ENST00000474047 EFNA5P52803 228 aa15.71■□□□□ 0.1
VAMP4-203ENST00000474047 GRIN1Q05586 938 aa15.71■□□□□ 0.1
VAMP4-203ENST00000474047 RNASELQ05823 741 aaKnown RBP15.71■□□□□ 0.1
VAMP4-203ENST00000474047 BECN1Q14457 450 aa15.71■□□□□ 0.1
VAMP4-203ENST00000474047 DHX8Q14562 1220 aaKnown RBP15.71■□□□□ 0.1
VAMP4-203ENST00000474047 PTPAQ15257 358 aa15.71■□□□□ 0.1
VAMP4-203ENST00000474047 FNDC1Q4ZHG4 1894 aaPredicted RBP15.71■□□□□ 0.1
VAMP4-203ENST00000474047 ZNF598Q86UK7 904 aaKnown RBP15.71■□□□□ 0.1
VAMP4-203ENST00000474047 THNSL1Q8IYQ7 743 aa15.71■□□□□ 0.1
VAMP4-203ENST00000474047 HACE1Q8IYU2 909 aa15.71■□□□□ 0.1
VAMP4-203ENST00000474047 SYT2Q8N9I0 419 aaPredicted RBP15.71■□□□□ 0.1
VAMP4-203ENST00000474047 BSNDQ8WZ55 320 aa15.71■□□□□ 0.1
VAMP4-203ENST00000474047 CCDC51Q96ER9 411 aa15.71■□□□□ 0.1
VAMP4-203ENST00000474047 USP28Q96RU2 1077 aa15.71■□□□□ 0.1
VAMP4-203ENST00000474047 RUSC1Q9BVN2 902 aa15.71■□□□□ 0.1
VAMP4-203ENST00000474047 TIPINQ9BVW5 301 aa15.71■□□□□ 0.1
VAMP4-203ENST00000474047 MRPL9Q9BYD2 267 aaKnown RBP15.71■□□□□ 0.1
VAMP4-203ENST00000474047 TFIP11Q9UBB9 837 aaKnown RBP15.71■□□□□ 0.1
VAMP4-203ENST00000474047 CCDC39Q9UFE4 941 aa15.71■□□□□ 0.1
VAMP4-203ENST00000474047 INPP5FQ9Y2H2 1132 aa15.71■□□□□ 0.1
VAMP4-203ENST00000474047 COL4A4P53420 1690 aaPredicted RBP15.7■□□□□ 0.1
VAMP4-203ENST00000474047 PRRC2BQ5JSZ5 2229 aaKnown RBP15.7■□□□□ 0.1
VAMP4-203ENST00000474047 HIP1RO75146 1068 aa15.7■□□□□ 0.1
VAMP4-203ENST00000474047 CSPG5O95196 566 aa15.7■□□□□ 0.1
VAMP4-203ENST00000474047 ATF7P17544 494 aaPredicted RBP15.7■□□□□ 0.1
VAMP4-203ENST00000474047 ARF4P18085 180 aaPredicted RBP15.7■□□□□ 0.1
VAMP4-203ENST00000474047 PEX3P56589 373 aa15.7■□□□□ 0.1
VAMP4-203ENST00000474047 RAD51AP2Q09MP3 1159 aa15.7■□□□□ 0.1
VAMP4-203ENST00000474047 DMP1Q13316 513 aaPredicted RBP15.7■□□□□ 0.1
VAMP4-203ENST00000474047 PRPF4BQ13523 1007 aaKnown RBP15.7■□□□□ 0.1
VAMP4-203ENST00000474047 SLC39A14Q15043 492 aa15.7■□□□□ 0.1
VAMP4-203ENST00000474047 KARSQ15046 597 aaKnown RBP15.7■□□□□ 0.1
VAMP4-203ENST00000474047 CSPP1Q1MSJ5 1256 aa15.7■□□□□ 0.1
VAMP4-203ENST00000474047 FOXD4L6Q3SYB3 417 aaPredicted RBP15.7■□□□□ 0.1
VAMP4-203ENST00000474047 TMEM119Q4V9L6 283 aa15.7■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms