RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 CLLU1OSQ5K130 101 aa17.55■□□□□ 0.4
CCDC88B-205ENST00000472524 TWF2Q6IBS0 349 aaKnown RBP17.55■□□□□ 0.4
CCDC88B-205ENST00000472524 LRRC55Q6ZSA7 311 aa17.55■□□□□ 0.4
CCDC88B-205ENST00000472524 EXOC8Q8IYI6 725 aa17.55■□□□□ 0.4
CCDC88B-205ENST00000472524 VN1R2Q8NFZ6 395 aa17.55■□□□□ 0.4
CCDC88B-205ENST00000472524 HELQQ8TDG4 1101 aa17.55■□□□□ 0.4
CCDC88B-205ENST00000472524 MICAL1Q8TDZ2 1067 aa17.55■□□□□ 0.4
CCDC88B-205ENST00000472524 PRPF31Q8WWY3 499 aaKnown RBP17.55■□□□□ 0.4
CCDC88B-205ENST00000472524 ZSCAN31Q96LW9 406 aaPredicted RBP17.55■□□□□ 0.4
CCDC88B-205ENST00000472524 LLPHQ9BRT6 129 aaKnown RBP17.55■□□□□ 0.4
CCDC88B-205ENST00000472524 TLE6Q9H808 572 aa17.55■□□□□ 0.4
CCDC88B-205ENST00000472524 CHST12Q9NRB3 414 aa17.55■□□□□ 0.4
CCDC88B-205ENST00000472524 SRGAP2CP0DJJ0 459 aa17.54■□□□□ 0.4
CCDC88B-205ENST00000472524 PBX3P40426 434 aa17.54■□□□□ 0.4
CCDC88B-205ENST00000472524 UBE3AQ05086 875 aa17.54■□□□□ 0.4
CCDC88B-205ENST00000472524 LONRF3Q496Y0 759 aa17.54■□□□□ 0.4
CCDC88B-205ENST00000472524 ZNF598Q86UK7 904 aaKnown RBP17.54■□□□□ 0.4
CCDC88B-205ENST00000472524 ALYREFQ86V81 257 aaKnown RBP17.54■□□□□ 0.4
CCDC88B-205ENST00000472524 FAM184AQ8NB25 1140 aa17.54■□□□□ 0.4
CCDC88B-205ENST00000472524 TCP11Q8WWU5 503 aa17.54■□□□□ 0.4
CCDC88B-205ENST00000472524 FBXL18Q96ME1 805 aa17.54■□□□□ 0.4
CCDC88B-205ENST00000472524 MTRQ99707 1265 aa17.54■□□□□ 0.4
CCDC88B-205ENST00000472524 TMEM60Q9H2L4 133 aa17.54■□□□□ 0.4
CCDC88B-205ENST00000472524 IFT122Q9HBG6 1241 aa17.54■□□□□ 0.4
CCDC88B-205ENST00000472524 TLR9Q9NR96 1032 aa17.54■□□□□ 0.4
CCDC88B-205ENST00000472524 USP15Q9Y4E8 981 aaPredicted RBP17.54■□□□□ 0.4
CCDC88B-205ENST00000472524 MUC6Q6W4X9 2439 aa17.53■□□□□ 0.4
CCDC88B-205ENST00000472524 WDFY4Q6ZS81 3184 aa17.53■□□□□ 0.4
CCDC88B-205ENST00000472524 POTEMA6NI47 508 aa17.53■□□□□ 0.4
CCDC88B-205ENST00000472524 GAS2O43903 313 aaKnown RBP17.53■□□□□ 0.4
CCDC88B-205ENST00000472524 EOMESO95936 686 aa17.53■□□□□ 0.4
CCDC88B-205ENST00000472524 PHKA2P46019 1235 aa17.53■□□□□ 0.4
CCDC88B-205ENST00000472524 ERVFC1P60507 584 aa17.53■□□□□ 0.4
CCDC88B-205ENST00000472524 HMGN5P82970 282 aaKnown RBP17.53■□□□□ 0.4
CCDC88B-205ENST00000472524 LAMTOR4Q0VGL1 99 aa17.53■□□□□ 0.4
CCDC88B-205ENST00000472524 GNL2Q13823 731 aaKnown RBP17.53■□□□□ 0.4
CCDC88B-205ENST00000472524 KCNT2Q6UVM3 1135 aa17.53■□□□□ 0.4
CCDC88B-205ENST00000472524 LPPQ93052 612 aa17.53■□□□□ 0.4
CCDC88B-205ENST00000472524 CCDC43Q96MW1 224 aaKnown RBP17.53■□□□□ 0.4
CCDC88B-205ENST00000472524 ZNF558Q96NG5 402 aa17.53■□□□□ 0.4
CCDC88B-205ENST00000472524 MTMR9Q96QG7 549 aa17.53■□□□□ 0.4
CCDC88B-205ENST00000472524 SH2B1Q9NRF2 756 aaPredicted RBP17.53■□□□□ 0.4
CCDC88B-205ENST00000472524 TDRD15B5MCY1 1934 aaKnown RBP17.53■□□□□ 0.4
CCDC88B-205ENST00000472524 TRIOO75962 3097 aa17.52■□□□□ 0.4
CCDC88B-205ENST00000472524 PLPP4Q5VZY2 271 aa17.52■□□□□ 0.4
CCDC88B-205ENST00000472524 FERMT3Q86UX7 667 aa17.52■□□□□ 0.4
CCDC88B-205ENST00000472524 RNF149Q8NC42 400 aa17.52■□□□□ 0.4
CCDC88B-205ENST00000472524 HSD17B14Q9BPX1 270 aa17.52■□□□□ 0.4
CCDC88B-205ENST00000472524 MINDY3Q9H8M7 445 aa17.52■□□□□ 0.4
CCDC88B-205ENST00000472524 AGPAT5Q9NUQ2 364 aa17.52■□□□□ 0.4
CCDC88B-205ENST00000472524 FAM105AQ9NUU6 356 aa17.52■□□□□ 0.4
CCDC88B-205ENST00000472524 A0A087WWV3 80 aa17.51■□□□□ 0.39
CCDC88B-205ENST00000472524 LOC730098B7Z3J9 87 aa17.51■□□□□ 0.39
CCDC88B-205ENST00000472524 FSCN2O14926 492 aa17.51■□□□□ 0.39
CCDC88B-205ENST00000472524 SKIP12755 728 aa17.51■□□□□ 0.39
CCDC88B-205ENST00000472524 NHLH1Q02575 133 aa17.51■□□□□ 0.39
CCDC88B-205ENST00000472524 ZNF174Q15697 407 aa17.51■□□□□ 0.39
CCDC88B-205ENST00000472524 DUSP6Q16828 381 aa17.51■□□□□ 0.39
CCDC88B-205ENST00000472524 SRGAP1Q7Z6B7 1085 aa17.51■□□□□ 0.39
CCDC88B-205ENST00000472524 PIGOQ8TEQ8 1089 aa17.51■□□□□ 0.39
CCDC88B-205ENST00000472524 MRPS27Q92552 414 aaKnown RBP17.51■□□□□ 0.39
CCDC88B-205ENST00000472524 EDAQ92838 391 aa17.51■□□□□ 0.39
CCDC88B-205ENST00000472524 MRPL9Q9BYD2 267 aaKnown RBP17.51■□□□□ 0.39
CCDC88B-205ENST00000472524 FOXP1Q9H334 677 aaPredicted RBP17.51■□□□□ 0.39
CCDC88B-205ENST00000472524 XPNPEP1Q9NQW7 623 aa17.51■□□□□ 0.39
CCDC88B-205ENST00000472524 ENTPD7Q9NQZ7 604 aa17.51■□□□□ 0.39
CCDC88B-205ENST00000472524 ANKEF1Q9NU02 776 aa17.51■□□□□ 0.39
CCDC88B-205ENST00000472524 INPP5FQ9Y2H2 1132 aa17.51■□□□□ 0.39
CCDC88B-205ENST00000472524 MEIS3P2A8K0S8 358 aa17.5■□□□□ 0.39
CCDC88B-205ENST00000472524 ASAP2O43150 1006 aa17.5■□□□□ 0.39
CCDC88B-205ENST00000472524 LYPLA2O95372 231 aa17.5■□□□□ 0.39
CCDC88B-205ENST00000472524 PPM1AP35813 382 aa17.5■□□□□ 0.39
CCDC88B-205ENST00000472524 RBM25P49756 843 aaKnown RBP17.5■□□□□ 0.39
CCDC88B-205ENST00000472524 RAB27AP51159 221 aa17.5■□□□□ 0.39
CCDC88B-205ENST00000472524 PLCB3Q01970 1234 aa17.5■□□□□ 0.39
CCDC88B-205ENST00000472524 FBXO18Q8NFZ0 1043 aa17.5■□□□□ 0.39
CCDC88B-205ENST00000472524 MFSD14AQ96MC6 490 aa17.5■□□□□ 0.39
CCDC88B-205ENST00000472524 TCF25Q9BQ70 676 aa17.5■□□□□ 0.39
CCDC88B-205ENST00000472524 TRAIPQ9BWF2 469 aa17.5■□□□□ 0.39
CCDC88B-205ENST00000472524 SPG21Q9NZD8 308 aa17.5■□□□□ 0.39
CCDC88B-205ENST00000472524 PUF60Q9UHX1 559 aaKnown RBP17.5■□□□□ 0.39
CCDC88B-205ENST00000472524 NT5C1B-RDH14C9J2C7 533 aa17.49■□□□□ 0.39
CCDC88B-205ENST00000472524 USO1O60763 962 aaKnown RBP17.49■□□□□ 0.39
CCDC88B-205ENST00000472524 ZC3H11AO75152 810 aaKnown RBP eCLIP17.49■□□□□ 0.39
CCDC88B-205ENST00000472524 ERLIN2O94905 339 aa17.49■□□□□ 0.39
CCDC88B-205ENST00000472524 OR52Z1P0C646 297 aa17.49■□□□□ 0.39
CCDC88B-205ENST00000472524 TECP42680 631 aa17.49■□□□□ 0.39
CCDC88B-205ENST00000472524 RARRES1P49788 294 aa17.49■□□□□ 0.39
CCDC88B-205ENST00000472524 KRT17Q04695 432 aa17.49■□□□□ 0.39
CCDC88B-205ENST00000472524 CBX2Q14781 532 aaPredicted RBP17.49■□□□□ 0.39
CCDC88B-205ENST00000472524 TTC38Q5R3I4 469 aa17.49■□□□□ 0.39
CCDC88B-205ENST00000472524 GLB1LQ6UWU2 654 aa17.49■□□□□ 0.39
CCDC88B-205ENST00000472524 ASAP3Q8TDY4 903 aa17.49■□□□□ 0.39
CCDC88B-205ENST00000472524 SUSD6Q92537 303 aa17.49■□□□□ 0.39
CCDC88B-205ENST00000472524 RPGRIP1Q96KN7 1286 aa17.49■□□□□ 0.39
CCDC88B-205ENST00000472524 PHF7Q9BWX1 381 aaPredicted RBP17.49■□□□□ 0.39
CCDC88B-205ENST00000472524 LZTS1Q9Y250 596 aa17.49■□□□□ 0.39
CCDC88B-205ENST00000472524 PCDHB2Q9Y5E7 798 aa17.49■□□□□ 0.39
CCDC88B-205ENST00000472524 PIEZO1Q92508 2521 aa17.48■□□□□ 0.39
CCDC88B-205ENST00000472524 DGAT1O75907 488 aa17.48■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms