RNA–Protein interactions for RNA: ENST00000472308.1

SHH-205, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 504 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-205ENST00000472308 LENG9Q96B70 501 aa20.78■□□□□ 0.92
SHH-205ENST00000472308 EMILIN2Q9BXX0 1053 aa20.78■□□□□ 0.92
SHH-205ENST00000472308 GBP3Q9H0R5 595 aa20.78■□□□□ 0.92
SHH-205ENST00000472308 EPS15L1Q9UBC2 864 aa20.78■□□□□ 0.92
SHH-205ENST00000472308 FANCMQ8IYD8 2048 aa20.77■□□□□ 0.92
SHH-205ENST00000472308 WDR81Q562E7 1941 aa20.77■□□□□ 0.92
SHH-205ENST00000472308 CARNS1A5YM72 827 aa20.77■□□□□ 0.92
SHH-205ENST00000472308 SLC27A2O14975 620 aa20.77■□□□□ 0.92
SHH-205ENST00000472308 DCNP07585 359 aaKnown RBP20.77■□□□□ 0.92
SHH-205ENST00000472308 SP9P0CG40 484 aa20.77■□□□□ 0.92
SHH-205ENST00000472308 TBC1D8BQ0IIM8 1120 aa20.77■□□□□ 0.92
SHH-205ENST00000472308 SPECC1Q5M775 1068 aa20.77■□□□□ 0.92
SHH-205ENST00000472308 TWF2Q6IBS0 349 aaKnown RBP20.77■□□□□ 0.92
SHH-205ENST00000472308 RUBCNQ92622 972 aa20.77■□□□□ 0.92
SHH-205ENST00000472308 CNTNAP3BQ96NU0 1288 aa20.77■□□□□ 0.92
SHH-205ENST00000472308 MYADMQ96S97 322 aa20.77■□□□□ 0.92
SHH-205ENST00000472308 CNTNAP3Q9BZ76 1288 aa20.77■□□□□ 0.92
SHH-205ENST00000472308 GLT8D2Q9H1C3 349 aa20.77■□□□□ 0.92
SHH-205ENST00000472308 WDR6Q9NNW5 1121 aaKnown RBP20.77■□□□□ 0.92
SHH-205ENST00000472308 MAN1C1Q9NR34 630 aa20.77■□□□□ 0.92
SHH-205ENST00000472308 FAM105AQ9NUU6 356 aa20.77■□□□□ 0.92
SHH-205ENST00000472308 RBM28Q9NW13 759 aaKnown RBP20.77■□□□□ 0.92
SHH-205ENST00000472308 SAMM50Q9Y512 469 aa20.77■□□□□ 0.92
SHH-205ENST00000472308 ACACBO00763 2458 aa20.77■□□□□ 0.91
SHH-205ENST00000472308 WDR64B1ANS9 1081 aa20.76■□□□□ 0.91
SHH-205ENST00000472308 DDHD2O94830 711 aa20.76■□□□□ 0.91
SHH-205ENST00000472308 SRFP11831 508 aa20.76■□□□□ 0.91
SHH-205ENST00000472308 AFF1P51825 1210 aaKnown RBP20.76■□□□□ 0.91
SHH-205ENST00000472308 RNASELQ05823 741 aaKnown RBP20.76■□□□□ 0.91
SHH-205ENST00000472308 TARBP2Q15633 366 aaKnown RBP20.76■□□□□ 0.91
SHH-205ENST00000472308 EXOC6Q8TAG9 804 aa20.76■□□□□ 0.91
SHH-205ENST00000472308 GPR152Q8TDT2 470 aa20.76■□□□□ 0.91
SHH-205ENST00000472308 HINFPQ9BQA5 517 aa20.76■□□□□ 0.91
SHH-205ENST00000472308 GCOM2Q9BZD3 368 aaPredicted RBP20.76■□□□□ 0.91
SHH-205ENST00000472308 LSG1Q9H089 658 aaKnown RBP20.76■□□□□ 0.91
SHH-205ENST00000472308 TCEAL9Q9UHQ7 104 aa20.76■□□□□ 0.91
SHH-205ENST00000472308 BRPF3Q9ULD4 1205 aa20.76■□□□□ 0.91
SHH-205ENST00000472308 PIN4Q9Y237 131 aaKnown RBP20.76■□□□□ 0.91
SHH-205ENST00000472308 CLUHO75153 1309 aa20.76■□□□□ 0.91
SHH-205ENST00000472308 A0A087WZ62 844 aa20.75■□□□□ 0.91
SHH-205ENST00000472308 POTEMA6NI47 508 aa20.75■□□□□ 0.91
SHH-205ENST00000472308 ZNF623O75123 536 aa20.75■□□□□ 0.91
SHH-205ENST00000472308 GLULP15104 373 aa20.75■□□□□ 0.91
SHH-205ENST00000472308 GBP2P32456 591 aaPredicted RBP20.75■□□□□ 0.91
SHH-205ENST00000472308 RTN1Q16799 776 aa20.75■□□□□ 0.91
SHH-205ENST00000472308 PRR16Q569H4 304 aa20.75■□□□□ 0.91
SHH-205ENST00000472308 PHLDB3Q6NSJ2 640 aa20.75■□□□□ 0.91
SHH-205ENST00000472308 ZC3H14Q6PJT7 736 aaKnown RBP20.75■□□□□ 0.91
SHH-205ENST00000472308 POTEGQ6S5H5 508 aa20.75■□□□□ 0.91
SHH-205ENST00000472308 SUMF1Q8NBK3 374 aa20.75■□□□□ 0.91
SHH-205ENST00000472308 CEP89Q96ST8 783 aa20.75■□□□□ 0.91
SHH-205ENST00000472308 FDXACB1Q9BRP7 624 aaPredicted RBP20.75■□□□□ 0.91
SHH-205ENST00000472308 RHOBTB2Q9BYZ6 727 aa20.75■□□□□ 0.91
SHH-205ENST00000472308 DISC1Q9NRI5 854 aa20.75■□□□□ 0.91
SHH-205ENST00000472308 NRBP2Q9NSY0 501 aa20.75■□□□□ 0.91
SHH-205ENST00000472308 FAM217BQ9NTX9 383 aaPredicted RBP20.75■□□□□ 0.91
SHH-205ENST00000472308 DOCK8Q8NF50 2099 aa20.74■□□□□ 0.91
SHH-205ENST00000472308 CCDC195A0A1B0GUA6 201 aa20.74■□□□□ 0.91
SHH-205ENST00000472308 RFX1P22670 979 aa20.74■□□□□ 0.91
SHH-205ENST00000472308 CREB3L3Q68CJ9 461 aa20.74■□□□□ 0.91
SHH-205ENST00000472308 C1orf210Q8IVY1 113 aa20.74■□□□□ 0.91
SHH-205ENST00000472308 MAML2Q8IZL2 1156 aaPredicted RBP20.74■□□□□ 0.91
SHH-205ENST00000472308 ARHGEF3Q9NR81 526 aa20.74■□□□□ 0.91
SHH-205ENST00000472308 MRPL17Q9NRX2 175 aaKnown RBP20.74■□□□□ 0.91
SHH-205ENST00000472308 SPTBN2O15020 2390 aa20.74■□□□□ 0.91
SHH-205ENST00000472308 IGKV6-21A0A0C4DH24 114 aa20.73■□□□□ 0.91
SHH-205ENST00000472308 TMEM150BA6NC51 233 aa20.73■□□□□ 0.91
SHH-205ENST00000472308 RFPL2O75678 378 aa20.73■□□□□ 0.91
SHH-205ENST00000472308 MYBP10242 640 aa20.73■□□□□ 0.91
SHH-205ENST00000472308 SKIP12755 728 aa20.73■□□□□ 0.91
SHH-205ENST00000472308 SFPQP23246 707 aaKnown RBP eCLIP20.73■□□□□ 0.91
SHH-205ENST00000472308 CIITAP33076 1130 aa20.73■□□□□ 0.91
SHH-205ENST00000472308 NONOQ15233 471 aaKnown RBP eCLIP20.73■□□□□ 0.91
SHH-205ENST00000472308 RSPO4Q2I0M5 234 aaPredicted RBP20.73■□□□□ 0.91
SHH-205ENST00000472308 AGMOQ6ZNB7 445 aa20.73■□□□□ 0.91
SHH-205ENST00000472308 ZNF707Q96C28 371 aaPredicted RBP20.73■□□□□ 0.91
SHH-205ENST00000472308 STK39Q9UEW8 545 aa20.73■□□□□ 0.91
SHH-205ENST00000472308 SIT1Q9Y3P8 196 aa20.73■□□□□ 0.91
SHH-205ENST00000472308 C2CD2LO14523 706 aa20.72■□□□□ 0.91
SHH-205ENST00000472308 INPPL1O15357 1258 aa20.72■□□□□ 0.91
SHH-205ENST00000472308 TEX28O15482 410 aa20.72■□□□□ 0.91
SHH-205ENST00000472308 EDIL3O43854 480 aa20.72■□□□□ 0.91
SHH-205ENST00000472308 PAPLNO95428 1278 aa20.72■□□□□ 0.91
SHH-205ENST00000472308 CDC27P30260 824 aa20.72■□□□□ 0.91
SHH-205ENST00000472308 RAB27AP51159 221 aa20.72■□□□□ 0.91
SHH-205ENST00000472308 NECTIN1Q15223 517 aa20.72■□□□□ 0.91
SHH-205ENST00000472308 SYNE3Q6ZMZ3 975 aa20.72■□□□□ 0.91
SHH-205ENST00000472308 TAS1R1Q7RTX1 841 aa20.72■□□□□ 0.91
SHH-205ENST00000472308 STAMQ92783 540 aa20.72■□□□□ 0.91
SHH-205ENST00000472308 NXPE3Q969Y0 559 aa20.72■□□□□ 0.91
SHH-205ENST00000472308 RPS6KC1Q96S38 1066 aa20.72■□□□□ 0.91
SHH-205ENST00000472308 FOXQ1Q9C009 403 aa20.72■□□□□ 0.91
SHH-205ENST00000472308 MARCH5Q9NX47 278 aa20.72■□□□□ 0.91
SHH-205ENST00000472308 ESYT2A0FGR8 921 aa20.71■□□□□ 0.91
SHH-205ENST00000472308 NRP1O14786 923 aa20.71■□□□□ 0.91
SHH-205ENST00000472308 ZBTB43O43298 467 aa20.71■□□□□ 0.91
SHH-205ENST00000472308 CHMP2AO43633 222 aa20.71■□□□□ 0.91
SHH-205ENST00000472308 LRRN2O75325 713 aa20.71■□□□□ 0.91
SHH-205ENST00000472308 STBD1O95210 358 aa20.71■□□□□ 0.91
SHH-205ENST00000472308 EFEMP2O95967 443 aa20.71■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms