RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 KRT28Q7Z3Y7 464 aa5.78□□□□□ -1.48
SYNE1-220ENST00000471834 CCDC197Q8NCU1 140 aa5.78□□□□□ -1.48
SYNE1-220ENST00000471834 GLT8D2Q9H1C3 349 aa5.78□□□□□ -1.48
SYNE1-220ENST00000471834 LRCH1Q9Y2L9 728 aa5.78□□□□□ -1.48
SYNE1-220ENST00000471834 ARL2BPQ9Y2Y0 163 aa5.78□□□□□ -1.48
SYNE1-220ENST00000471834 QSER1Q2KHR3 1735 aa5.78□□□□□ -1.48
SYNE1-220ENST00000471834 ADGRA3Q8IWK6 1321 aa5.78□□□□□ -1.48
SYNE1-220ENST00000471834 GOLGA6L7A0A1B0GV03 622 aa5.78□□□□□ -1.48
SYNE1-220ENST00000471834 PODXLO00592 558 aa5.78□□□□□ -1.48
SYNE1-220ENST00000471834 BUD23O43709 281 aaKnown RBP5.78□□□□□ -1.48
SYNE1-220ENST00000471834 HSF2BPO75031 334 aa5.78□□□□□ -1.48
SYNE1-220ENST00000471834 CYP11B2P19099 503 aa5.78□□□□□ -1.48
SYNE1-220ENST00000471834 STX17P56962 302 aa5.78□□□□□ -1.48
SYNE1-220ENST00000471834 KCNC4Q03721 635 aa5.78□□□□□ -1.48
SYNE1-220ENST00000471834 CWF19L1Q69YN2 538 aaKnown RBP5.78□□□□□ -1.48
SYNE1-220ENST00000471834 ALKBH5Q6P6C2 394 aaKnown RBP5.78□□□□□ -1.48
SYNE1-220ENST00000471834 LRGUKQ96M69 825 aa5.78□□□□□ -1.48
SYNE1-220ENST00000471834 ZSWIM4Q9H7M6 989 aa5.78□□□□□ -1.48
SYNE1-220ENST00000471834 EPB41L5Q9HCM4 733 aa5.78□□□□□ -1.48
SYNE1-220ENST00000471834 USP15Q9Y4E8 981 aaPredicted RBP5.78□□□□□ -1.48
SYNE1-220ENST00000471834 AKR1B10O60218 316 aa5.78□□□□□ -1.48
SYNE1-220ENST00000471834 H2AFZP0C0S5 128 aa5.78□□□□□ -1.48
SYNE1-220ENST00000471834 ATF7P17544 494 aaPredicted RBP5.78□□□□□ -1.48
SYNE1-220ENST00000471834 RHBDL3P58872 404 aa5.78□□□□□ -1.48
SYNE1-220ENST00000471834 MRPS25P82663 173 aaKnown RBP5.78□□□□□ -1.48
SYNE1-220ENST00000471834 H2AFVQ71UI9 128 aa5.78□□□□□ -1.48
SYNE1-220ENST00000471834 GPATCH11Q8N954 259 aa5.78□□□□□ -1.48
SYNE1-220ENST00000471834 ETNPPLQ8TBG4 499 aa5.78□□□□□ -1.48
SYNE1-220ENST00000471834 MYL10Q9BUA6 226 aa5.78□□□□□ -1.48
SYNE1-220ENST00000471834 PANK4Q9NVE7 773 aa5.78□□□□□ -1.48
SYNE1-220ENST00000471834 CTNND2Q9UQB3 1225 aa5.78□□□□□ -1.48
SYNE1-220ENST00000471834 ZMYM2Q9UBW7 1377 aa5.78□□□□□ -1.48
SYNE1-220ENST00000471834 ANKRD65E5RJM6 399 aa5.78□□□□□ -1.48
SYNE1-220ENST00000471834 TTLL1O95922 423 aa5.78□□□□□ -1.48
SYNE1-220ENST00000471834 GCAP28676 217 aa5.78□□□□□ -1.48
SYNE1-220ENST00000471834 PABPC4Q13310 644 aaKnown RBP eCLIP5.78□□□□□ -1.48
SYNE1-220ENST00000471834 TAF12Q16514 161 aa5.78□□□□□ -1.48
SYNE1-220ENST00000471834 ACCSLQ4AC99 568 aa5.78□□□□□ -1.48
SYNE1-220ENST00000471834 ECHDC2Q86YB7 292 aa5.78□□□□□ -1.48
SYNE1-220ENST00000471834 RHOT2Q8IXI1 618 aa5.78□□□□□ -1.48
SYNE1-220ENST00000471834 LARP4BQ92615 738 aaKnown RBP5.78□□□□□ -1.48
SYNE1-220ENST00000471834 EIF3DO15371 548 aaKnown RBP eCLIP5.77□□□□□ -1.49
SYNE1-220ENST00000471834 LUC7L3O95232 432 aaKnown RBP5.77□□□□□ -1.49
SYNE1-220ENST00000471834 MAPTP10636 758 aaKnown RBP5.77□□□□□ -1.49
SYNE1-220ENST00000471834 PLCG1P19174 1290 aa5.77□□□□□ -1.49
SYNE1-220ENST00000471834 SNRPFP62306 86 aaKnown RBP5.77□□□□□ -1.49
SYNE1-220ENST00000471834 AMPD3Q01432 767 aa5.77□□□□□ -1.49
SYNE1-220ENST00000471834 PTK2Q05397 1052 aa5.77□□□□□ -1.49
SYNE1-220ENST00000471834 KRT72Q14CN4 511 aa5.77□□□□□ -1.49
SYNE1-220ENST00000471834 DLGAP5Q15398 846 aa5.77□□□□□ -1.49
SYNE1-220ENST00000471834 PTPN21Q16825 1174 aa5.77□□□□□ -1.49
SYNE1-220ENST00000471834 C6orf118Q5T5N4 469 aa5.77□□□□□ -1.49
SYNE1-220ENST00000471834 LRRC38Q5VT99 294 aa5.77□□□□□ -1.49
SYNE1-220ENST00000471834 LINC00299Q6ZSB3 139 aa5.77□□□□□ -1.49
SYNE1-220ENST00000471834 TRABD2AQ86V40 505 aa5.77□□□□□ -1.49
SYNE1-220ENST00000471834 ARHGAP28Q9P2N2 729 aa5.77□□□□□ -1.49
SYNE1-220ENST00000471834 CIDEBQ9UHD4 219 aa5.77□□□□□ -1.49
SYNE1-220ENST00000471834 LRRC37AA6NMS7 1700 aa5.77□□□□□ -1.49
SYNE1-220ENST00000471834 SPDYE3A6NKU9 549 aa5.77□□□□□ -1.49
SYNE1-220ENST00000471834 C6orf229H3BNL8 230 aa5.77□□□□□ -1.49
SYNE1-220ENST00000471834 FAM163BP0C2L3 166 aa5.77□□□□□ -1.49
SYNE1-220ENST00000471834 KIF5BP33176 963 aa5.77□□□□□ -1.49
SYNE1-220ENST00000471834 CTNNA1P35221 906 aaKnown RBP5.77□□□□□ -1.49
SYNE1-220ENST00000471834 FLT3P36888 993 aa5.77□□□□□ -1.49
SYNE1-220ENST00000471834 EMP3P54852 163 aa5.77□□□□□ -1.49
SYNE1-220ENST00000471834 DTNBP1Q96EV8 351 aa5.77□□□□□ -1.49
SYNE1-220ENST00000471834 KIAA1522Q9P206 1035 aaPredicted RBP5.77□□□□□ -1.49
SYNE1-220ENST00000471834 WDR35Q9P2L0 1181 aa5.77□□□□□ -1.49
SYNE1-220ENST00000471834 TMCO1Q9UM00 188 aa5.77□□□□□ -1.49
SYNE1-220ENST00000471834 CCNHP51946 323 aaPredicted RBP5.77□□□□□ -1.49
SYNE1-220ENST00000471834 SH3BGRP55822 239 aaPredicted RBP5.77□□□□□ -1.49
SYNE1-220ENST00000471834 CLDN10P78369 228 aa5.77□□□□□ -1.49
SYNE1-220ENST00000471834 C2orf54Q08AI8 447 aa5.77□□□□□ -1.49
SYNE1-220ENST00000471834 FAM26FQ5R3K3 315 aa5.77□□□□□ -1.49
SYNE1-220ENST00000471834 RC3H1Q5TC82 1133 aaKnown RBP5.77□□□□□ -1.49
SYNE1-220ENST00000471834 CCDC63Q8NA47 563 aa5.77□□□□□ -1.49
SYNE1-220ENST00000471834 LZICQ8WZA0 190 aa5.77□□□□□ -1.49
SYNE1-220ENST00000471834 PTPRN2Q92932 1015 aa5.77□□□□□ -1.49
SYNE1-220ENST00000471834 LBHD1Q9BQE6 289 aaPredicted RBP5.77□□□□□ -1.49
SYNE1-220ENST00000471834 SYT15Q9BQS2 421 aa5.77□□□□□ -1.49
SYNE1-220ENST00000471834 ZSWIM1Q9BR11 485 aa5.77□□□□□ -1.49
SYNE1-220ENST00000471834 QTRT2Q9H974 415 aaKnown RBP5.77□□□□□ -1.49
SYNE1-220ENST00000471834 TRPC5Q9UL62 973 aaPredicted RBP5.77□□□□□ -1.49
SYNE1-220ENST00000471834 ZMYND8Q9ULU4 1186 aaPredicted RBP5.77□□□□□ -1.49
SYNE1-220ENST00000471834 KIAA1024Q9UPX6 916 aa5.77□□□□□ -1.49
SYNE1-220ENST00000471834 SMIM22K7EJ46 135 aa5.77□□□□□ -1.49
SYNE1-220ENST00000471834 SMAPO00193 183 aa5.77□□□□□ -1.49
SYNE1-220ENST00000471834 HOXA10P31260 410 aaPredicted RBP5.77□□□□□ -1.49
SYNE1-220ENST00000471834 PTK6Q13882 451 aa5.77□□□□□ -1.49
SYNE1-220ENST00000471834 RBM26Q5T8P6 1007 aaKnown RBP5.77□□□□□ -1.49
SYNE1-220ENST00000471834 CCDC174Q6PII3 467 aa5.77□□□□□ -1.49
SYNE1-220ENST00000471834 DNAJC10Q8IXB1 793 aa5.77□□□□□ -1.49
SYNE1-220ENST00000471834 SYCE1Q8N0S2 351 aa5.77□□□□□ -1.49
SYNE1-220ENST00000471834 ZNF444Q8N0Y2 327 aaPredicted RBP5.77□□□□□ -1.49
SYNE1-220ENST00000471834 NKD2Q969F2 451 aaPredicted RBP5.77□□□□□ -1.49
SYNE1-220ENST00000471834 WHRNQ9P202 907 aa5.77□□□□□ -1.49
SYNE1-220ENST00000471834 ITGA4P13612 1032 aa5.77□□□□□ -1.49
SYNE1-220ENST00000471834 ALDH5A1P51649 535 aaPredicted RBP5.77□□□□□ -1.49
SYNE1-220ENST00000471834 CAV1Q03135 178 aa5.77□□□□□ -1.49
SYNE1-220ENST00000471834 ITGA9Q13797 1035 aa5.77□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms