RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 OTUD6AQ7L8S5 288 aa18.53■□□□□ 0.56
CCDC28B-204ENST00000469003 SLC39A11Q8N1S5 342 aa18.53■□□□□ 0.56
CCDC28B-204ENST00000469003 VN1R2Q8NFZ6 395 aa18.53■□□□□ 0.56
CCDC28B-204ENST00000469003 PSPC1Q8WXF1 523 aaKnown RBP18.53■□□□□ 0.56
CCDC28B-204ENST00000469003 DYDC2Q96IM9 177 aa18.53■□□□□ 0.56
CCDC28B-204ENST00000469003 ZSWIM4Q9H7M6 989 aa18.53■□□□□ 0.56
CCDC28B-204ENST00000469003 ENTPD7Q9NQZ7 604 aa18.53■□□□□ 0.56
CCDC28B-204ENST00000469003 FAM105AQ9NUU6 356 aa18.53■□□□□ 0.56
CCDC28B-204ENST00000469003 ZNF623O75123 536 aa18.52■□□□□ 0.56
CCDC28B-204ENST00000469003 RBM10P98175 930 aaKnown RBP18.52■□□□□ 0.56
CCDC28B-204ENST00000469003 KCNC3Q14003 757 aa18.52■□□□□ 0.56
CCDC28B-204ENST00000469003 TMEM184AQ6ZMB5 413 aa18.52■□□□□ 0.56
CCDC28B-204ENST00000469003 SRGAP1Q7Z6B7 1085 aa18.52■□□□□ 0.56
CCDC28B-204ENST00000469003 TCP11Q8WWU5 503 aa18.52■□□□□ 0.56
CCDC28B-204ENST00000469003 PRPF31Q8WWY3 499 aaKnown RBP18.52■□□□□ 0.56
CCDC28B-204ENST00000469003 TMEM143Q96AN5 459 aa18.52■□□□□ 0.56
CCDC28B-204ENST00000469003 AGPAT5Q9NUQ2 364 aa18.52■□□□□ 0.56
CCDC28B-204ENST00000469003 USP15Q9Y4E8 981 aaPredicted RBP18.52■□□□□ 0.56
CCDC28B-204ENST00000469003 BTBD18B2RXH4 712 aa18.51■□□□□ 0.55
CCDC28B-204ENST00000469003 SRGAP2BP0DMP2 458 aa18.51■□□□□ 0.55
CCDC28B-204ENST00000469003 BCAR1P56945 870 aa18.51■□□□□ 0.55
CCDC28B-204ENST00000469003 CYP4A11Q02928 519 aa18.51■□□□□ 0.55
CCDC28B-204ENST00000469003 TRIM29Q14134 588 aa18.51■□□□□ 0.55
CCDC28B-204ENST00000469003 CTTNQ14247 550 aaKnown RBP18.51■□□□□ 0.55
CCDC28B-204ENST00000469003 EMC2Q15006 297 aa18.51■□□□□ 0.55
CCDC28B-204ENST00000469003 XKR9Q5GH70 373 aa18.51■□□□□ 0.55
CCDC28B-204ENST00000469003 GLB1LQ6UWU2 654 aa18.51■□□□□ 0.55
CCDC28B-204ENST00000469003 TMC7Q7Z402 723 aa18.51■□□□□ 0.55
CCDC28B-204ENST00000469003 DIS3L2Q8IYB7 885 aaKnown RBP18.51■□□□□ 0.55
CCDC28B-204ENST00000469003 LPPQ93052 612 aa18.51■□□□□ 0.55
CCDC28B-204ENST00000469003 PCDHA12Q9UN75 941 aa18.51■□□□□ 0.55
CCDC28B-204ENST00000469003 WDFY4Q6ZS81 3184 aa18.51■□□□□ 0.55
CCDC28B-204ENST00000469003 CARNS1A5YM72 827 aa18.5■□□□□ 0.55
CCDC28B-204ENST00000469003 HIDE1A8MVS5 230 aa18.5■□□□□ 0.55
CCDC28B-204ENST00000469003 ASAP2O43150 1006 aa18.5■□□□□ 0.55
CCDC28B-204ENST00000469003 JAK2O60674 1132 aa18.5■□□□□ 0.55
CCDC28B-204ENST00000469003 SLITRK3O94933 977 aa18.5■□□□□ 0.55
CCDC28B-204ENST00000469003 SRGAP2CP0DJJ0 459 aa18.5■□□□□ 0.55
CCDC28B-204ENST00000469003 ALDH7A1P49419 539 aaKnown RBP18.5■□□□□ 0.55
CCDC28B-204ENST00000469003 LAMTOR4Q0VGL1 99 aa18.5■□□□□ 0.55
CCDC28B-204ENST00000469003 SMC1AQ14683 1233 aaKnown RBP18.5■□□□□ 0.55
CCDC28B-204ENST00000469003 CALCRLQ16602 461 aa18.5■□□□□ 0.55
CCDC28B-204ENST00000469003 NOMO2Q5JPE7 1267 aa18.5■□□□□ 0.55
CCDC28B-204ENST00000469003 RNF135Q8IUD6 432 aa18.5■□□□□ 0.55
CCDC28B-204ENST00000469003 TPH2Q8IWU9 490 aa18.5■□□□□ 0.55
CCDC28B-204ENST00000469003 EIF2AK1Q9BQI3 630 aaKnown RBP18.5■□□□□ 0.55
CCDC28B-204ENST00000469003 BMP2KQ9NSY1 1161 aaPredicted RBP18.5■□□□□ 0.55
CCDC28B-204ENST00000469003 C5orf42Q9H799 3197 aa18.49■□□□□ 0.55
CCDC28B-204ENST00000469003 MEIS3P2A8K0S8 358 aa18.49■□□□□ 0.55
CCDC28B-204ENST00000469003 ZBTB39O15060 712 aa18.49■□□□□ 0.55
CCDC28B-204ENST00000469003 OFD1O75665 1012 aa18.49■□□□□ 0.55
CCDC28B-204ENST00000469003 LYPLA2O95372 231 aa18.49■□□□□ 0.55
CCDC28B-204ENST00000469003 FOSBP53539 338 aa18.49■□□□□ 0.55
CCDC28B-204ENST00000469003 NHLH1Q02575 133 aa18.49■□□□□ 0.55
CCDC28B-204ENST00000469003 ST3GAL1Q11201 340 aa18.49■□□□□ 0.55
CCDC28B-204ENST00000469003 LONRF3Q496Y0 759 aa18.49■□□□□ 0.55
CCDC28B-204ENST00000469003 HERC4Q5GLZ8 1057 aaPredicted RBP18.49■□□□□ 0.55
CCDC28B-204ENST00000469003 ANKRD54Q6NXT1 300 aa18.49■□□□□ 0.55
CCDC28B-204ENST00000469003 FERMT3Q86UX7 667 aa18.49■□□□□ 0.55
CCDC28B-204ENST00000469003 SUSD6Q92537 303 aa18.49■□□□□ 0.55
CCDC28B-204ENST00000469003 PGBD4Q96DM1 585 aa18.49■□□□□ 0.55
CCDC28B-204ENST00000469003 TMEM169Q96HH4 297 aa18.49■□□□□ 0.55
CCDC28B-204ENST00000469003 MTRQ99707 1265 aa18.49■□□□□ 0.55
CCDC28B-204ENST00000469003 HSD17B14Q9BPX1 270 aa18.49■□□□□ 0.55
CCDC28B-204ENST00000469003 PHF7Q9BWX1 381 aaPredicted RBP18.49■□□□□ 0.55
CCDC28B-204ENST00000469003 MINDY3Q9H8M7 445 aa18.49■□□□□ 0.55
CCDC28B-204ENST00000469003 TBC1D13Q9NVG8 400 aa18.49■□□□□ 0.55
CCDC28B-204ENST00000469003 PCDHB2Q9Y5E7 798 aa18.49■□□□□ 0.55
CCDC28B-204ENST00000469003 LOC730098B7Z3J9 87 aa18.48■□□□□ 0.55
CCDC28B-204ENST00000469003 NT5C1B-RDH14C9J2C7 533 aa18.48■□□□□ 0.55
CCDC28B-204ENST00000469003 NEMFO60524 1076 aa18.48■□□□□ 0.55
CCDC28B-204ENST00000469003 ZC3H11AO75152 810 aaKnown RBP eCLIP18.48■□□□□ 0.55
CCDC28B-204ENST00000469003 SEC24BO95487 1268 aa18.48■□□□□ 0.55
CCDC28B-204ENST00000469003 TECP42680 631 aa18.48■□□□□ 0.55
CCDC28B-204ENST00000469003 BMS1Q14692 1282 aaKnown RBP18.48■□□□□ 0.55
CCDC28B-204ENST00000469003 MRPL10Q7Z7H8 261 aaKnown RBP18.48■□□□□ 0.55
CCDC28B-204ENST00000469003 MRPL43Q8N983 215 aaKnown RBP18.48■□□□□ 0.55
CCDC28B-204ENST00000469003 RNF149Q8NC42 400 aa18.48■□□□□ 0.55
CCDC28B-204ENST00000469003 MTMR9Q96QG7 549 aa18.48■□□□□ 0.55
CCDC28B-204ENST00000469003 NRDE2Q9H7Z3 1164 aa18.48■□□□□ 0.55
CCDC28B-204ENST00000469003 TTC12Q9H892 705 aaPredicted RBP18.48■□□□□ 0.55
CCDC28B-204ENST00000469003 XPNPEP1Q9NQW7 623 aa18.48■□□□□ 0.55
CCDC28B-204ENST00000469003 ANKEF1Q9NU02 776 aa18.48■□□□□ 0.55
CCDC28B-204ENST00000469003 MUTYHQ9UIF7 546 aa18.48■□□□□ 0.55
CCDC28B-204ENST00000469003 INPP5FQ9Y2H2 1132 aa18.48■□□□□ 0.55
CCDC28B-204ENST00000469003 C2orf71A6NGG8 1288 aa18.47■□□□□ 0.55
CCDC28B-204ENST00000469003 WNT7AO00755 349 aa18.47■□□□□ 0.55
CCDC28B-204ENST00000469003 HOXB8P17481 243 aaPredicted RBP18.47■□□□□ 0.55
CCDC28B-204ENST00000469003 HOXA11P31270 313 aaPredicted RBP18.47■□□□□ 0.55
CCDC28B-204ENST00000469003 TXKP42681 527 aa18.47■□□□□ 0.55
CCDC28B-204ENST00000469003 RNASELQ05823 741 aaKnown RBP18.47■□□□□ 0.55
CCDC28B-204ENST00000469003 MXD4Q14582 209 aaPredicted RBP18.47■□□□□ 0.55
CCDC28B-204ENST00000469003 CBX2Q14781 532 aaPredicted RBP18.47■□□□□ 0.55
CCDC28B-204ENST00000469003 LLGL2Q6P1M3 1020 aa18.47■□□□□ 0.55
CCDC28B-204ENST00000469003 SYCE2Q6PIF2 218 aa18.47■□□□□ 0.55
CCDC28B-204ENST00000469003 AGMOQ6ZNB7 445 aa18.47■□□□□ 0.55
CCDC28B-204ENST00000469003 CASP10Q92851 521 aa18.47■□□□□ 0.55
CCDC28B-204ENST00000469003 IGSF21Q96ID5 467 aa18.47■□□□□ 0.55
CCDC28B-204ENST00000469003 FBXL18Q96ME1 805 aa18.47■□□□□ 0.55
CCDC28B-204ENST00000469003 S1PR5Q9H228 398 aa18.47■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms