RNA–Protein interactions for RNA: ENST00000467731.1

SCAF4-204, Transcript of SR-related CTD associated factor 4, humanhuman

TSL 1 (best)

Gene SCAF4, Length 2,976 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF4-204ENST00000467731 NAMPTP43490 491 aa7.56□□□□□ -1.2
SCAF4-204ENST00000467731 ATN1P54259 1190 aaPredicted RBP7.56□□□□□ -1.2
SCAF4-204ENST00000467731 TAF2Q6P1X5 1199 aa7.56□□□□□ -1.2
SCAF4-204ENST00000467731 ANKLE1Q8NAG6 615 aa7.56□□□□□ -1.2
SCAF4-204ENST00000467731 WNT8BQ93098 351 aa7.56□□□□□ -1.2
SCAF4-204ENST00000467731 NTPCRQ9BSD7 190 aaKnown RBP7.56□□□□□ -1.2
SCAF4-204ENST00000467731 PPP1R3GB7ZBB8 358 aa7.55□□□□□ -1.2
SCAF4-204ENST00000467731 NLRP11P59045 1033 aaKnown RBP7.55□□□□□ -1.2
SCAF4-204ENST00000467731 PTPN11Q06124 597 aaPredicted RBP7.55□□□□□ -1.2
SCAF4-204ENST00000467731 KCNA1Q09470 495 aa7.55□□□□□ -1.2
SCAF4-204ENST00000467731 PPP2R5AQ15172 486 aa7.55□□□□□ -1.2
SCAF4-204ENST00000467731 KLHL10Q6JEL2 608 aa7.55□□□□□ -1.2
SCAF4-204ENST00000467731 HAUS6Q7Z4H7 955 aa7.55□□□□□ -1.2
SCAF4-204ENST00000467731 SERINC5Q86VE9 423 aa7.55□□□□□ -1.2
SCAF4-204ENST00000467731 TMEM161BQ8NDZ6 487 aa7.55□□□□□ -1.2
SCAF4-204ENST00000467731 SCFD1Q8WVM8 642 aa7.55□□□□□ -1.2
SCAF4-204ENST00000467731 SPIRE2Q8WWL2 714 aa7.55□□□□□ -1.2
SCAF4-204ENST00000467731 PAWRQ96IZ0 340 aaKnown RBP7.55□□□□□ -1.2
SCAF4-204ENST00000467731 TRPV6Q9H1D0 765 aa7.55□□□□□ -1.2
SCAF4-204ENST00000467731 ARHGAP28Q9P2N2 729 aa7.55□□□□□ -1.2
SCAF4-204ENST00000467731 NOD1Q9Y239 953 aa7.55□□□□□ -1.2
SCAF4-204ENST00000467731 A0A087WZ62 844 aa7.55□□□□□ -1.2
SCAF4-204ENST00000467731 PPP1R37O75864 691 aa7.55□□□□□ -1.2
SCAF4-204ENST00000467731 PRPF6O94906 941 aaKnown RBP7.55□□□□□ -1.2
SCAF4-204ENST00000467731 MAPTP10636 758 aaKnown RBP7.55□□□□□ -1.2
SCAF4-204ENST00000467731 COL6A1P12109 1028 aa7.55□□□□□ -1.2
SCAF4-204ENST00000467731 CDK7P50613 346 aa7.55□□□□□ -1.2
SCAF4-204ENST00000467731 GPC3P51654 580 aa7.55□□□□□ -1.2
SCAF4-204ENST00000467731 KIZQ2M2Z5 673 aa7.55□□□□□ -1.2
SCAF4-204ENST00000467731 COL13A1Q5TAT6 717 aaPredicted RBP7.55□□□□□ -1.2
SCAF4-204ENST00000467731 EPM2AIP1Q7L775 607 aaPredicted RBP7.55□□□□□ -1.2
SCAF4-204ENST00000467731 ADSSL1Q8N142 457 aa7.55□□□□□ -1.2
SCAF4-204ENST00000467731 MLKLQ8NB16 471 aa7.55□□□□□ -1.2
SCAF4-204ENST00000467731 FDXACB1Q9BRP7 624 aaPredicted RBP7.55□□□□□ -1.2
SCAF4-204ENST00000467731 TSPYL1Q9H0U9 437 aa7.55□□□□□ -1.2
SCAF4-204ENST00000467731 TSPY26PQ9H489 355 aa7.55□□□□□ -1.2
SCAF4-204ENST00000467731 IFT122Q9HBG6 1241 aa7.55□□□□□ -1.2
SCAF4-204ENST00000467731 GINS2Q9Y248 185 aa7.55□□□□□ -1.2
SCAF4-204ENST00000467731 DENND3A2RUS2 1198 aa7.54□□□□□ -1.2
SCAF4-204ENST00000467731 RBAK-RBAKDNI3L0D1 243 aa7.54□□□□□ -1.2
SCAF4-204ENST00000467731 EIF3DO15371 548 aaKnown RBP eCLIP7.54□□□□□ -1.2
SCAF4-204ENST00000467731 ASAP2O43150 1006 aa7.54□□□□□ -1.2
SCAF4-204ENST00000467731 CSDE1O75534 798 aaKnown RBP7.54□□□□□ -1.2
SCAF4-204ENST00000467731 HOXD13P35453 343 aa7.54□□□□□ -1.2
SCAF4-204ENST00000467731 MRE11P49959 708 aa7.54□□□□□ -1.2
SCAF4-204ENST00000467731 GTF2BQ00403 316 aa7.54□□□□□ -1.2
SCAF4-204ENST00000467731 COBLL1Q53SF7 1204 aa7.54□□□□□ -1.2
SCAF4-204ENST00000467731 CDCA2Q69YH5 1023 aaPredicted RBP7.54□□□□□ -1.2
SCAF4-204ENST00000467731 SLC39A5Q6ZMH5 540 aa7.54□□□□□ -1.2
SCAF4-204ENST00000467731 TAS1R3Q7RTX0 852 aa7.54□□□□□ -1.2
SCAF4-204ENST00000467731 NELFCDQ8IXH7 590 aa7.54□□□□□ -1.2
SCAF4-204ENST00000467731 MYOCDQ8IZQ8 938 aa7.54□□□□□ -1.2
SCAF4-204ENST00000467731 GUF1Q8N442 669 aaKnown RBP7.54□□□□□ -1.2
SCAF4-204ENST00000467731 SLC17A8Q8NDX2 589 aa7.54□□□□□ -1.2
SCAF4-204ENST00000467731 DEPTORQ8TB45 409 aa7.54□□□□□ -1.2
SCAF4-204ENST00000467731 NLRP7Q8WX94 980 aa7.54□□□□□ -1.2
SCAF4-204ENST00000467731 SCLT1Q96NL6 688 aa7.54□□□□□ -1.2
SCAF4-204ENST00000467731 STRA6Q9BX79 667 aa7.54□□□□□ -1.2
SCAF4-204ENST00000467731 ST6GALNAC4Q9H4F1 302 aa7.54□□□□□ -1.2
SCAF4-204ENST00000467731 PCDHB13Q9Y5F0 798 aa7.54□□□□□ -1.2
SCAF4-204ENST00000467731 PQBP1O60828 265 aaKnown RBP7.54□□□□□ -1.2
SCAF4-204ENST00000467731 GPR32O75388 356 aa7.54□□□□□ -1.2
SCAF4-204ENST00000467731 EN2P19622 333 aaPredicted RBP7.54□□□□□ -1.2
SCAF4-204ENST00000467731 STIM1Q13586 685 aa7.54□□□□□ -1.2
SCAF4-204ENST00000467731 TFDP1Q14186 410 aa7.54□□□□□ -1.2
SCAF4-204ENST00000467731 GAS2L3Q86XJ1 694 aa7.54□□□□□ -1.2
SCAF4-204ENST00000467731 FAM126BQ8IXS8 530 aa7.54□□□□□ -1.2
SCAF4-204ENST00000467731 DHX38Q92620 1227 aaKnown RBP7.54□□□□□ -1.2
SCAF4-204ENST00000467731 OSMRQ99650 979 aa7.54□□□□□ -1.2
SCAF4-204ENST00000467731 IKZF4Q9H2S9 585 aa7.54□□□□□ -1.2
SCAF4-204ENST00000467731 C11orf49Q9H6J7 331 aa7.54□□□□□ -1.2
SCAF4-204ENST00000467731 MINDY3Q9H8M7 445 aa7.54□□□□□ -1.2
SCAF4-204ENST00000467731 CDHR5Q9HBB8 845 aa7.54□□□□□ -1.2
SCAF4-204ENST00000467731 DACH1Q9UI36 760 aa7.54□□□□□ -1.2
SCAF4-204ENST00000467731 CTNND2Q9UQB3 1225 aa7.54□□□□□ -1.2
SCAF4-204ENST00000467731 ZMYM2Q9UBW7 1377 aa7.53□□□□□ -1.2
SCAF4-204ENST00000467731 MROH7Q68CQ1 1323 aa7.53□□□□□ -1.2
SCAF4-204ENST00000467731 TRIM49BA6NDI0 452 aa7.53□□□□□ -1.2
SCAF4-204ENST00000467731 PSMA7O14818 248 aa7.53□□□□□ -1.2
SCAF4-204ENST00000467731 CTSHP09668 335 aa7.53□□□□□ -1.2
SCAF4-204ENST00000467731 IQCF3P0C7M6 154 aa7.53□□□□□ -1.2
SCAF4-204ENST00000467731 ZNF165P49910 485 aa7.53□□□□□ -1.2
SCAF4-204ENST00000467731 PMS1P54277 932 aaKnown RBP7.53□□□□□ -1.2
SCAF4-204ENST00000467731 STX17P56962 302 aa7.53□□□□□ -1.2
SCAF4-204ENST00000467731 PTENP60484 403 aa7.53□□□□□ -1.2
SCAF4-204ENST00000467731 PAK1Q13153 545 aa7.53□□□□□ -1.2
SCAF4-204ENST00000467731 PTK7Q13308 1070 aa7.53□□□□□ -1.2
SCAF4-204ENST00000467731 ALCAMQ13740 583 aa7.53□□□□□ -1.2
SCAF4-204ENST00000467731 BMT2Q1RMZ1 405 aa7.53□□□□□ -1.2
SCAF4-204ENST00000467731 STXBP4Q6ZWJ1 553 aa7.53□□□□□ -1.2
SCAF4-204ENST00000467731 ZNF410Q86VK4 478 aa7.53□□□□□ -1.2
SCAF4-204ENST00000467731 NME8Q8N427 588 aa7.53□□□□□ -1.2
SCAF4-204ENST00000467731 ZNF507Q8TCN5 953 aa7.53□□□□□ -1.2
SCAF4-204ENST00000467731 SEZ6LQ9BYH1 1024 aa7.53□□□□□ -1.2
SCAF4-204ENST00000467731 NFKBIZQ9BYH8 718 aa7.53□□□□□ -1.2
SCAF4-204ENST00000467731 ADAMTS10Q9H324 1103 aa7.53□□□□□ -1.2
SCAF4-204ENST00000467731 TBX20Q9UMR3 447 aa7.53□□□□□ -1.2
SCAF4-204ENST00000467731 ALPK3Q96L96 1907 aa7.53□□□□□ -1.2
SCAF4-204ENST00000467731 H0YCG3 227 aa7.53□□□□□ -1.2
SCAF4-204ENST00000467731 INO80B-WBP1J3KQ70 363 aa7.53□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms