RNA–Protein interactions for RNA: ENST00000466285.1

COL6A1-203, Transcript of collagen type VI alpha 1 chain, humanhuman

TSL 3

Gene COL6A1, Length 500 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-203ENST00000466285 TMEM143Q96AN5 459 aa23.11■■□□□ 1.29
COL6A1-203ENST00000466285 ASIC4Q96FT7 647 aa23.11■■□□□ 1.29
COL6A1-203ENST00000466285 C22orf23Q9BZE7 217 aa23.11■■□□□ 1.29
COL6A1-203ENST00000466285 NGRNQ9NPE2 291 aaKnown RBP23.11■■□□□ 1.29
COL6A1-203ENST00000466285 CYP26B1Q9NR63 512 aa23.11■■□□□ 1.29
COL6A1-203ENST00000466285 FAM105AQ9NUU6 356 aa23.11■■□□□ 1.29
COL6A1-203ENST00000466285 EPCAMP16422 314 aa23.1■■□□□ 1.29
COL6A1-203ENST00000466285 SFPQP23246 707 aaKnown RBP eCLIP23.1■■□□□ 1.29
COL6A1-203ENST00000466285 CA8P35219 290 aa23.1■■□□□ 1.29
COL6A1-203ENST00000466285 MRE11P49959 708 aa23.1■■□□□ 1.29
COL6A1-203ENST00000466285 SPIRE1Q08AE8 756 aa23.1■■□□□ 1.29
COL6A1-203ENST00000466285 PIK3AP1Q6ZUJ8 805 aa23.1■■□□□ 1.29
COL6A1-203ENST00000466285 ZNF410Q86VK4 478 aa23.1■■□□□ 1.29
COL6A1-203ENST00000466285 ZNF280BQ86YH2 543 aa23.1■■□□□ 1.29
COL6A1-203ENST00000466285 DACT1Q9NYF0 836 aa23.1■■□□□ 1.29
COL6A1-203ENST00000466285 RGL1Q9NZL6 768 aa23.1■■□□□ 1.29
COL6A1-203ENST00000466285 PUF60Q9UHX1 559 aaKnown RBP23.1■■□□□ 1.29
COL6A1-203ENST00000466285 USP34Q70CQ2 3546 aa23.1■■□□□ 1.29
COL6A1-203ENST00000466285 STK36Q9NRP7 1315 aa23.09■■□□□ 1.29
COL6A1-203ENST00000466285 SLC11A1P49279 550 aa23.09■■□□□ 1.29
COL6A1-203ENST00000466285 UBXN11Q5T124 520 aa23.09■■□□□ 1.29
COL6A1-203ENST00000466285 AGMOQ6ZNB7 445 aa23.09■■□□□ 1.29
COL6A1-203ENST00000466285 CATSPER4Q7RTX7 472 aa23.09■■□□□ 1.29
COL6A1-203ENST00000466285 NEK8Q86SG6 692 aa23.09■■□□□ 1.29
COL6A1-203ENST00000466285 VPS52Q8N1B4 723 aa23.09■■□□□ 1.29
COL6A1-203ENST00000466285 PBXIP1Q96AQ6 731 aa23.09■■□□□ 1.29
COL6A1-203ENST00000466285 TRAIPQ9BWF2 469 aa23.09■■□□□ 1.29
COL6A1-203ENST00000466285 MRPL9Q9BYD2 267 aaKnown RBP23.09■■□□□ 1.29
COL6A1-203ENST00000466285 GBP3Q9H0R5 595 aa23.09■■□□□ 1.29
COL6A1-203ENST00000466285 AGPAT5Q9NUQ2 364 aa23.09■■□□□ 1.29
COL6A1-203ENST00000466285 COL4A3BPQ9Y5P4 624 aa23.09■■□□□ 1.29
COL6A1-203ENST00000466285 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP23.08■■□□□ 1.29
COL6A1-203ENST00000466285 C2CD4DB7Z1M9 353 aa23.08■■□□□ 1.29
COL6A1-203ENST00000466285 OFD1O75665 1012 aa23.08■■□□□ 1.29
COL6A1-203ENST00000466285 QARSP47897 775 aaKnown RBP23.08■■□□□ 1.29
COL6A1-203ENST00000466285 KRT17Q04695 432 aa23.08■■□□□ 1.29
COL6A1-203ENST00000466285 NR5A1Q13285 461 aa23.08■■□□□ 1.29
COL6A1-203ENST00000466285 PTPN21Q16825 1174 aa23.08■■□□□ 1.29
COL6A1-203ENST00000466285 ZNF710Q8N1W2 664 aa23.08■■□□□ 1.29
COL6A1-203ENST00000466285 LXNQ9BS40 222 aa23.08■■□□□ 1.29
COL6A1-203ENST00000466285 DHX33Q9H6R0 707 aaKnown RBP23.08■■□□□ 1.29
COL6A1-203ENST00000466285 CHST12Q9NRB3 414 aa23.08■■□□□ 1.29
COL6A1-203ENST00000466285 TSHZ2Q9NRE2 1034 aa23.08■■□□□ 1.29
COL6A1-203ENST00000466285 TDRD15B5MCY1 1934 aaKnown RBP23.08■■□□□ 1.28
COL6A1-203ENST00000466285 CCDC194A0A1B0GVG4 234 aa23.07■■□□□ 1.28
COL6A1-203ENST00000466285 EPB41L2O43491 1005 aaKnown RBP23.07■■□□□ 1.28
COL6A1-203ENST00000466285 CCNT1O60563 726 aaKnown RBP23.07■■□□□ 1.28
COL6A1-203ENST00000466285 PFKFB2O60825 505 aa23.07■■□□□ 1.28
COL6A1-203ENST00000466285 DDHD2O94830 711 aa23.07■■□□□ 1.28
COL6A1-203ENST00000466285 GALTP07902 379 aa23.07■■□□□ 1.28
COL6A1-203ENST00000466285 FDPSP14324 419 aaKnown RBP23.07■■□□□ 1.28
COL6A1-203ENST00000466285 HOXA11P31270 313 aaPredicted RBP23.07■■□□□ 1.28
COL6A1-203ENST00000466285 CYP4A11Q02928 519 aa23.07■■□□□ 1.28
COL6A1-203ENST00000466285 NOMO2Q5JPE7 1267 aa23.07■■□□□ 1.28
COL6A1-203ENST00000466285 RARS2Q5T160 578 aaKnown RBP23.07■■□□□ 1.28
COL6A1-203ENST00000466285 NCAPH2Q6IBW4 605 aa23.07■■□□□ 1.28
COL6A1-203ENST00000466285 GALNT17Q6IS24 598 aa23.07■■□□□ 1.28
COL6A1-203ENST00000466285 BMP8AQ7Z5Y6 402 aa23.07■■□□□ 1.28
COL6A1-203ENST00000466285 PRPF31Q8WWY3 499 aaKnown RBP23.07■■□□□ 1.28
COL6A1-203ENST00000466285 TNFRSF25Q93038 417 aa23.07■■□□□ 1.28
COL6A1-203ENST00000466285 TMEM169Q96HH4 297 aa23.07■■□□□ 1.28
COL6A1-203ENST00000466285 IGSF21Q96ID5 467 aa23.07■■□□□ 1.28
COL6A1-203ENST00000466285 DYDC2Q96IM9 177 aa23.07■■□□□ 1.28
COL6A1-203ENST00000466285 MFSD14AQ96MC6 490 aa23.07■■□□□ 1.28
COL6A1-203ENST00000466285 XPNPEP1Q9NQW7 623 aa23.07■■□□□ 1.28
COL6A1-203ENST00000466285 CXCL14O95715 111 aa23.06■■□□□ 1.28
COL6A1-203ENST00000466285 SRGAP2CP0DJJ0 459 aa23.06■■□□□ 1.28
COL6A1-203ENST00000466285 DNM2P50570 870 aa23.06■■□□□ 1.28
COL6A1-203ENST00000466285 FOSBP53539 338 aa23.06■■□□□ 1.28
COL6A1-203ENST00000466285 TCF15Q12870 199 aa23.06■■□□□ 1.28
COL6A1-203ENST00000466285 CTTNQ14247 550 aaKnown RBP23.06■■□□□ 1.28
COL6A1-203ENST00000466285 NECAB1Q8N987 351 aa23.06■■□□□ 1.28
COL6A1-203ENST00000466285 CASP10Q92851 521 aa23.06■■□□□ 1.28
COL6A1-203ENST00000466285 CEP170P1Q96L14 293 aa23.06■■□□□ 1.28
COL6A1-203ENST00000466285 SLKQ9H2G2 1235 aaPredicted RBP23.06■■□□□ 1.28
COL6A1-203ENST00000466285 PCDHB2Q9Y5E7 798 aa23.06■■□□□ 1.28
COL6A1-203ENST00000466285 MYO15AQ9UKN7 3530 aa23.05■■□□□ 1.28
COL6A1-203ENST00000466285 FSD2A1L4K1 749 aa23.05■■□□□ 1.28
COL6A1-203ENST00000466285 F8W810 466 aa23.05■■□□□ 1.28
COL6A1-203ENST00000466285 SRGAP2BP0DMP2 458 aa23.05■■□□□ 1.28
COL6A1-203ENST00000466285 ALDH7A1P49419 539 aaKnown RBP23.05■■□□□ 1.28
COL6A1-203ENST00000466285 POLGP54098 1239 aaPredicted RBP23.05■■□□□ 1.28
COL6A1-203ENST00000466285 AK2P54819 239 aa23.05■■□□□ 1.28
COL6A1-203ENST00000466285 SIGLEC14Q08ET2 396 aa23.05■■□□□ 1.28
COL6A1-203ENST00000466285 LAMTOR4Q0VGL1 99 aa23.05■■□□□ 1.28
COL6A1-203ENST00000466285 EMC2Q15006 297 aa23.05■■□□□ 1.28
COL6A1-203ENST00000466285 PTPN14Q15678 1187 aa23.05■■□□□ 1.28
COL6A1-203ENST00000466285 PPP4R3AQ6IN85 833 aa23.05■■□□□ 1.28
COL6A1-203ENST00000466285 GLB1LQ6UWU2 654 aa23.05■■□□□ 1.28
COL6A1-203ENST00000466285 FBXL6Q8N531 539 aa23.05■■□□□ 1.28
COL6A1-203ENST00000466285 SLC22A17Q8WUG5 538 aa23.05■■□□□ 1.28
COL6A1-203ENST00000466285 ZNF623O75123 536 aa23.04■■□□□ 1.28
COL6A1-203ENST00000466285 CTSAP10619 480 aa23.04■■□□□ 1.28
COL6A1-203ENST00000466285 HOXB8P17481 243 aaPredicted RBP23.04■■□□□ 1.28
COL6A1-203ENST00000466285 YWHABP31946 246 aaKnown RBP23.04■■□□□ 1.28
COL6A1-203ENST00000466285 ST3GAL1Q11201 340 aa23.04■■□□□ 1.28
COL6A1-203ENST00000466285 CPLX2Q6PUV4 134 aaKnown RBP23.04■■□□□ 1.28
COL6A1-203ENST00000466285 FAM20AQ96MK3 541 aa23.04■■□□□ 1.28
COL6A1-203ENST00000466285 EIF2AQ9BY44 585 aaKnown RBP23.04■■□□□ 1.28
COL6A1-203ENST00000466285 ADAM7Q9H2U9 754 aa23.04■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms