RNA–Protein interactions for RNA: ENST00000466048.6

USP54-210, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 5

Gene USP54, Length 4,674 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-210ENST00000466048 SUPT20HL2P0C7V6 817 aa8.29□□□□□ -1.08
USP54-210ENST00000466048 TXNP10599 105 aaKnown RBP8.29□□□□□ -1.08
USP54-210ENST00000466048 PHKA2P46019 1235 aa8.29□□□□□ -1.08
USP54-210ENST00000466048 ERCC6LQ2NKX8 1250 aa8.29□□□□□ -1.08
USP54-210ENST00000466048 CEP120Q8N960 986 aa8.29□□□□□ -1.08
USP54-210ENST00000466048 KIAA0895Q8NCT3 520 aa8.29□□□□□ -1.08
USP54-210ENST00000466048 SEPT1Q8WYJ6 367 aa8.29□□□□□ -1.08
USP54-210ENST00000466048 SELENOSQ9BQE4 189 aa8.29□□□□□ -1.08
USP54-210ENST00000466048 ZCCHC17Q9NP64 241 aaKnown RBP8.29□□□□□ -1.08
USP54-210ENST00000466048 LZTFL1Q9NQ48 299 aa8.29□□□□□ -1.08
USP54-210ENST00000466048 ABHD10Q9NUJ1 306 aa8.29□□□□□ -1.08
USP54-210ENST00000466048 NKIRAS1Q9NYS0 192 aa8.29□□□□□ -1.08
USP54-210ENST00000466048 BAIAP2L1Q9UHR4 511 aa8.29□□□□□ -1.08
USP54-210ENST00000466048 VAV3Q9UKW4 847 aa8.29□□□□□ -1.08
USP54-210ENST00000466048 PPME1Q9Y570 386 aa8.29□□□□□ -1.08
USP54-210ENST00000466048 PDXKO00764 312 aa8.28□□□□□ -1.08
USP54-210ENST00000466048 ATP2A1O14983 1001 aa8.28□□□□□ -1.08
USP54-210ENST00000466048 CHUKO15111 745 aa8.28□□□□□ -1.08
USP54-210ENST00000466048 SLC16A3O15427 465 aaKnown RBP8.28□□□□□ -1.08
USP54-210ENST00000466048 GAS2O43903 313 aaKnown RBP8.28□□□□□ -1.08
USP54-210ENST00000466048 MED24O75448 989 aa8.28□□□□□ -1.08
USP54-210ENST00000466048 SLURP2P0DP57 97 aa8.28□□□□□ -1.08
USP54-210ENST00000466048 ACTN1P12814 892 aa8.28□□□□□ -1.08
USP54-210ENST00000466048 PTPRAP18433 802 aa8.28□□□□□ -1.08
USP54-210ENST00000466048 VCAM1P19320 739 aa8.28□□□□□ -1.08
USP54-210ENST00000466048 TNFAIP2Q03169 654 aa8.28□□□□□ -1.08
USP54-210ENST00000466048 Q3C1V9 767 aa8.28□□□□□ -1.08
USP54-210ENST00000466048 MAEAQ7L5Y9 396 aa8.28□□□□□ -1.08
USP54-210ENST00000466048 CCHCR1Q8TD31 782 aa8.28□□□□□ -1.08
USP54-210ENST00000466048 BCAS4Q8TDM0 211 aa8.28□□□□□ -1.08
USP54-210ENST00000466048 MED15Q96RN5 788 aa8.28□□□□□ -1.08
USP54-210ENST00000466048 CAPS2Q9BXY5 557 aa8.28□□□□□ -1.08
USP54-210ENST00000466048 SYNCQ9H7C4 482 aa8.28□□□□□ -1.08
USP54-210ENST00000466048 PLCB1Q9NQ66 1216 aa8.28□□□□□ -1.08
USP54-210ENST00000466048 POTEFA5A3E0 1075 aa8.28□□□□□ -1.08
USP54-210ENST00000466048 IPO5O00410 1097 aaKnown RBP8.28□□□□□ -1.08
USP54-210ENST00000466048 EXOC3O60645 756 aa8.28□□□□□ -1.08
USP54-210ENST00000466048 GCNT3O95395 438 aa8.28□□□□□ -1.08
USP54-210ENST00000466048 POTEIP0CG38 1075 aa8.28□□□□□ -1.08
USP54-210ENST00000466048 SLC12A3P55017 1021 aa8.28□□□□□ -1.08
USP54-210ENST00000466048 HNRNPH2P55795 449 aaKnown RBP8.28□□□□□ -1.08
USP54-210ENST00000466048 PHLDB3Q6NSJ2 640 aa8.28□□□□□ -1.08
USP54-210ENST00000466048 C8orf74Q6P047 294 aa8.28□□□□□ -1.08
USP54-210ENST00000466048 POTEGQ6S5H5 508 aa8.28□□□□□ -1.08
USP54-210ENST00000466048 POTEEQ6S8J3 1075 aa8.28□□□□□ -1.08
USP54-210ENST00000466048 APTXQ7Z2E3 356 aaKnown RBP8.28□□□□□ -1.08
USP54-210ENST00000466048 DNAJC19Q96DA6 116 aa8.28□□□□□ -1.08
USP54-210ENST00000466048 ATG4CQ96DT6 458 aa8.28□□□□□ -1.08
USP54-210ENST00000466048 WNK4Q96J92 1243 aa8.28□□□□□ -1.08
USP54-210ENST00000466048 DUSP9Q99956 384 aaKnown RBP8.28□□□□□ -1.08
USP54-210ENST00000466048 TRIM4Q9C037 500 aa8.28□□□□□ -1.08
USP54-210ENST00000466048 NDST4Q9H3R1 872 aa8.28□□□□□ -1.08
USP54-210ENST00000466048 UTP18Q9Y5J1 556 aaKnown RBP eCLIP8.28□□□□□ -1.08
USP54-210ENST00000466048 RPTORQ8N122 1335 aa8.28□□□□□ -1.08
USP54-210ENST00000466048 COL4A5P29400 1685 aa8.28□□□□□ -1.08
USP54-210ENST00000466048 MYH7BA7E2Y1 1941 aa8.28□□□□□ -1.08
USP54-210ENST00000466048 SLC15A5A6NIM6 579 aa8.28□□□□□ -1.08
USP54-210ENST00000466048 LRRIQ4A6NIV6 560 aa8.28□□□□□ -1.08
USP54-210ENST00000466048 PSMD10O75832 226 aa8.28□□□□□ -1.08
USP54-210ENST00000466048 NR3C2P08235 984 aa8.28□□□□□ -1.08
USP54-210ENST00000466048 CYP2B6P20813 491 aa8.28□□□□□ -1.08
USP54-210ENST00000466048 PSMC5P62195 406 aa8.28□□□□□ -1.08
USP54-210ENST00000466048 CDK17Q00537 523 aa8.28□□□□□ -1.08
USP54-210ENST00000466048 BAATQ14032 418 aaPredicted RBP8.28□□□□□ -1.08
USP54-210ENST00000466048 TAOK1Q7L7X3 1001 aa8.28□□□□□ -1.08
USP54-210ENST00000466048 OTOP1Q7RTM1 612 aa8.28□□□□□ -1.08
USP54-210ENST00000466048 L3MBTL3Q96JM7 780 aaPredicted RBP8.28□□□□□ -1.08
USP54-210ENST00000466048 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP8.28□□□□□ -1.08
USP54-210ENST00000466048 PARVGQ9HBI0 331 aa8.28□□□□□ -1.08
USP54-210ENST00000466048 PCDHA10Q9Y5I2 948 aa8.28□□□□□ -1.08
USP54-210ENST00000466048 IKBKGQ9Y6K9 419 aa8.28□□□□□ -1.08
USP54-210ENST00000466048 FRMD3A2A2Y4 597 aa8.27□□□□□ -1.08
USP54-210ENST00000466048 ASAP2O43150 1006 aa8.27□□□□□ -1.08
USP54-210ENST00000466048 FECHP22830 423 aa8.27□□□□□ -1.08
USP54-210ENST00000466048 SNRPFP62306 86 aaKnown RBP8.27□□□□□ -1.08
USP54-210ENST00000466048 MXRA7P84157 204 aa8.27□□□□□ -1.08
USP54-210ENST00000466048 SP3Q02447 781 aa8.27□□□□□ -1.08
USP54-210ENST00000466048 EHHADHQ08426 723 aa8.27□□□□□ -1.08
USP54-210ENST00000466048 LRRC23Q53EV4 343 aaPredicted RBP8.27□□□□□ -1.08
USP54-210ENST00000466048 LENG9Q96B70 501 aa8.27□□□□□ -1.08
USP54-210ENST00000466048 ZNF302Q9NR11 478 aa8.27□□□□□ -1.08
USP54-210ENST00000466048 TYW1Q9NV66 732 aaKnown RBP8.27□□□□□ -1.08
USP54-210ENST00000466048 SLC9A2Q9UBY0 812 aa8.27□□□□□ -1.08
USP54-210ENST00000466048 GUCA1BQ9UMX6 200 aa8.27□□□□□ -1.08
USP54-210ENST00000466048 ZNF541Q9H0D2 1346 aa8.27□□□□□ -1.09
USP54-210ENST00000466048 IGLV3-22A0A075B6J6 115 aa8.27□□□□□ -1.09
USP54-210ENST00000466048 CABYRO75952 493 aa8.27□□□□□ -1.09
USP54-210ENST00000466048 LDHAP00338 332 aaKnown RBP8.27□□□□□ -1.09
USP54-210ENST00000466048 TGFB3P10600 412 aa8.27□□□□□ -1.09
USP54-210ENST00000466048 LIG3P49916 1009 aa8.27□□□□□ -1.09
USP54-210ENST00000466048 SLC26A2P50443 739 aa8.27□□□□□ -1.09
USP54-210ENST00000466048 IRX1P78414 480 aaPredicted RBP8.27□□□□□ -1.09
USP54-210ENST00000466048 KNOP1Q1ED39 458 aaKnown RBP8.27□□□□□ -1.09
USP54-210ENST00000466048 HSP90AA5PQ58FG0 334 aa8.27□□□□□ -1.09
USP54-210ENST00000466048 CCDC122Q5T0U0 273 aa8.27□□□□□ -1.09
USP54-210ENST00000466048 FRMD5Q7Z6J6 570 aa8.27□□□□□ -1.09
USP54-210ENST00000466048 PSPC1Q8WXF1 523 aaKnown RBP8.27□□□□□ -1.09
USP54-210ENST00000466048 SPATA33Q96N06 139 aa8.27□□□□□ -1.09
USP54-210ENST00000466048 ACCSQ96QU6 501 aa8.27□□□□□ -1.09
USP54-210ENST00000466048 SEZ6LQ9BYH1 1024 aa8.27□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms