RNA–Protein interactions for RNA: ENST00000463684.1

SMC1A-204, Transcript of structural maintenance of chromosomes 1A, humanhuman

TSL 2

Gene SMC1A, Length 880 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-204ENST00000463684 SFNP31947 248 aa16.3■□□□□ 0.2
SMC1A-204ENST00000463684 GBP2P32456 591 aaPredicted RBP16.3■□□□□ 0.2
SMC1A-204ENST00000463684 CIITAP33076 1130 aa16.3■□□□□ 0.2
SMC1A-204ENST00000463684 SLC11A1P49279 550 aa16.3■□□□□ 0.2
SMC1A-204ENST00000463684 RAB27AP51159 221 aa16.3■□□□□ 0.2
SMC1A-204ENST00000463684 KIAA2013Q8IYS2 634 aa16.3■□□□□ 0.2
SMC1A-204ENST00000463684 FEZF2Q8TBJ5 459 aa16.3■□□□□ 0.2
SMC1A-204ENST00000463684 URGCPQ8TCY9 931 aa16.3■□□□□ 0.2
SMC1A-204ENST00000463684 STAMQ92783 540 aa16.3■□□□□ 0.2
SMC1A-204ENST00000463684 RMDN1Q96DB5 314 aa16.3■□□□□ 0.2
SMC1A-204ENST00000463684 FAM193BQ96PV7 902 aaPredicted RBP16.3■□□□□ 0.2
SMC1A-204ENST00000463684 FDXACB1Q9BRP7 624 aaPredicted RBP16.3■□□□□ 0.2
SMC1A-204ENST00000463684 ZMYND12Q9H0C1 365 aa16.3■□□□□ 0.2
SMC1A-204ENST00000463684 NAP1L2Q9ULW6 460 aaPredicted RBP16.3■□□□□ 0.2
SMC1A-204ENST00000463684 ESYT2A0FGR8 921 aa16.29■□□□□ 0.2
SMC1A-204ENST00000463684 CHMP2AO43633 222 aa16.29■□□□□ 0.2
SMC1A-204ENST00000463684 GAS7O60861 476 aa16.29■□□□□ 0.2
SMC1A-204ENST00000463684 ZNF623O75123 536 aa16.29■□□□□ 0.2
SMC1A-204ENST00000463684 JAK3P52333 1124 aa16.29■□□□□ 0.2
SMC1A-204ENST00000463684 MTERF2Q49AM1 385 aa16.29■□□□□ 0.2
SMC1A-204ENST00000463684 ZC3H14Q6PJT7 736 aaKnown RBP16.29■□□□□ 0.2
SMC1A-204ENST00000463684 CYP26C1Q6V0L0 522 aa16.29■□□□□ 0.2
SMC1A-204ENST00000463684 CATSPER4Q7RTX7 472 aa16.29■□□□□ 0.2
SMC1A-204ENST00000463684 ZNF410Q86VK4 478 aa16.29■□□□□ 0.2
SMC1A-204ENST00000463684 RIT2Q99578 217 aa16.29■□□□□ 0.2
SMC1A-204ENST00000463684 HINFPQ9BQA5 517 aa16.29■□□□□ 0.2
SMC1A-204ENST00000463684 VN1R3Q9BXE9 311 aa16.29■□□□□ 0.2
SMC1A-204ENST00000463684 ANO2Q9NQ90 1003 aa16.29■□□□□ 0.2
SMC1A-204ENST00000463684 KANSL3Q9P2N6 904 aa16.29■□□□□ 0.2
SMC1A-204ENST00000463684 SSX2IPQ9Y2D8 614 aa16.29■□□□□ 0.2
SMC1A-204ENST00000463684 FAN1Q9Y2M0 1017 aa16.29■□□□□ 0.2
SMC1A-204ENST00000463684 R4GN57 208 aa16.29■□□□□ 0.2
SMC1A-204ENST00000463684 FAM186AA6NE01 2351 aa16.29■□□□□ 0.2
SMC1A-204ENST00000463684 KLF18A0A0U1RQI7 1052 aa16.28■□□□□ 0.2
SMC1A-204ENST00000463684 CCDC196A0A1B0GTZ2 297 aa16.28■□□□□ 0.2
SMC1A-204ENST00000463684 CCDC195A0A1B0GUA6 201 aa16.28■□□□□ 0.2
SMC1A-204ENST00000463684 KRBA1A5PL33 1030 aa16.28■□□□□ 0.2
SMC1A-204ENST00000463684 CDC27P30260 824 aa16.28■□□□□ 0.2
SMC1A-204ENST00000463684 EXOSC10Q01780 885 aaKnown RBP16.28■□□□□ 0.2
SMC1A-204ENST00000463684 DRP2Q13474 957 aa16.28■□□□□ 0.2
SMC1A-204ENST00000463684 TARBP2Q15633 366 aaKnown RBP16.28■□□□□ 0.2
SMC1A-204ENST00000463684 UGCGQ16739 394 aa16.28■□□□□ 0.2
SMC1A-204ENST00000463684 DHX32Q7L7V1 743 aaKnown RBP16.28■□□□□ 0.2
SMC1A-204ENST00000463684 ZNF280BQ86YH2 543 aa16.28■□□□□ 0.2
SMC1A-204ENST00000463684 RHPN2Q8IUC4 686 aa16.28■□□□□ 0.2
SMC1A-204ENST00000463684 SLC44A3Q8N4M1 653 aa16.28■□□□□ 0.2
SMC1A-204ENST00000463684 CMASQ8NFW8 434 aaPredicted RBP16.28■□□□□ 0.2
SMC1A-204ENST00000463684 BICD2Q8TD16 824 aa16.28■□□□□ 0.2
SMC1A-204ENST00000463684 RSAD2Q8WXG1 361 aa16.28■□□□□ 0.2
SMC1A-204ENST00000463684 RIN2Q8WYP3 895 aaPredicted RBP16.28■□□□□ 0.2
SMC1A-204ENST00000463684 NXPE3Q969Y0 559 aa16.28■□□□□ 0.2
SMC1A-204ENST00000463684 TCEANC2Q96MN5 208 aa16.28■□□□□ 0.2
SMC1A-204ENST00000463684 ESYT1Q9BSJ8 1104 aa16.28■□□□□ 0.2
SMC1A-204ENST00000463684 TEKT3Q9BXF9 490 aa16.28■□□□□ 0.2
SMC1A-204ENST00000463684 NIFKQ9BYG3 293 aaKnown RBP16.28■□□□□ 0.2
SMC1A-204ENST00000463684 FAM217BQ9NTX9 383 aaPredicted RBP16.28■□□□□ 0.2
SMC1A-204ENST00000463684 SUCLA2Q9P2R7 463 aaPredicted RBP16.28■□□□□ 0.2
SMC1A-204ENST00000463684 SEPT9Q9UHD8 586 aaPredicted RBP16.28■□□□□ 0.2
SMC1A-204ENST00000463684 CA14Q9ULX7 337 aa16.28■□□□□ 0.2
SMC1A-204ENST00000463684 MEIS3P2A8K0S8 358 aa16.27■□□□□ 0.2
SMC1A-204ENST00000463684 C2CD2LO14523 706 aa16.27■□□□□ 0.2
SMC1A-204ENST00000463684 MSH4O15457 936 aa16.27■□□□□ 0.2
SMC1A-204ENST00000463684 LILRB3O75022 631 aa16.27■□□□□ 0.2
SMC1A-204ENST00000463684 ADH1AP07327 375 aa16.27■□□□□ 0.2
SMC1A-204ENST00000463684 ADD1P35611 737 aaKnown RBP16.27■□□□□ 0.2
SMC1A-204ENST00000463684 AK2P54819 239 aa16.27■□□□□ 0.2
SMC1A-204ENST00000463684 PUM1Q14671 1186 aaKnown RBP eCLIP16.27■□□□□ 0.21e-13■■■■□ 21.4
SMC1A-204ENST00000463684 XKR3Q5GH77 459 aa16.27■□□□□ 0.2
SMC1A-204ENST00000463684 LRCH2Q5VUJ6 765 aa16.27■□□□□ 0.2
SMC1A-204ENST00000463684 LENG9Q96B70 501 aa16.27■□□□□ 0.2
SMC1A-204ENST00000463684 CCDC136Q96JN2 1154 aa16.27■□□□□ 0.2
SMC1A-204ENST00000463684 TMEM175Q9BSA9 504 aa16.27■□□□□ 0.2
SMC1A-204ENST00000463684 TBC1D17Q9HA65 648 aa16.27■□□□□ 0.2
SMC1A-204ENST00000463684 WDR6Q9NNW5 1121 aaKnown RBP16.27■□□□□ 0.2
SMC1A-204ENST00000463684 MAN1C1Q9NR34 630 aa16.27■□□□□ 0.2
SMC1A-204ENST00000463684 SIT1Q9Y3P8 196 aa16.27■□□□□ 0.2
SMC1A-204ENST00000463684 PCDHB2Q9Y5E7 798 aa16.27■□□□□ 0.2
SMC1A-204ENST00000463684 IGKV6-21A0A0C4DH24 114 aa16.26■□□□□ 0.19
SMC1A-204ENST00000463684 MED19A0JLT2 244 aaPredicted RBP16.26■□□□□ 0.19
SMC1A-204ENST00000463684 NRP1O14786 923 aa16.26■□□□□ 0.19
SMC1A-204ENST00000463684 ADAMTS3O15072 1205 aa16.26■□□□□ 0.19
SMC1A-204ENST00000463684 N4BP1O75113 896 aaKnown RBP16.26■□□□□ 0.19
SMC1A-204ENST00000463684 DDHD2O94830 711 aa16.26■□□□□ 0.19
SMC1A-204ENST00000463684 URODP06132 367 aa16.26■□□□□ 0.19
SMC1A-204ENST00000463684 SRFP11831 508 aa16.26■□□□□ 0.19
SMC1A-204ENST00000463684 RCAN1P53805 252 aa16.26■□□□□ 0.19
SMC1A-204ENST00000463684 FGD1P98174 961 aa16.26■□□□□ 0.19
SMC1A-204ENST00000463684 SPECC1Q5M775 1068 aa16.26■□□□□ 0.19
SMC1A-204ENST00000463684 MIER3Q7Z3K6 550 aa16.26■□□□□ 0.19
SMC1A-204ENST00000463684 RDM1Q8NG50 284 aa16.26■□□□□ 0.19
SMC1A-204ENST00000463684 UNC45AQ9H3U1 944 aa16.26■□□□□ 0.19
SMC1A-204ENST00000463684 EPS15L1Q9UBC2 864 aa16.26■□□□□ 0.19
SMC1A-204ENST00000463684 CLUHO75153 1309 aa16.25■□□□□ 0.19
SMC1A-204ENST00000463684 DDX11L8A8MPP1 907 aa16.25■□□□□ 0.19
SMC1A-204ENST00000463684 INPPL1O15357 1258 aa16.25■□□□□ 0.19
SMC1A-204ENST00000463684 GLUD1P00367 558 aa16.25■□□□□ 0.19
SMC1A-204ENST00000463684 SOD2P04179 222 aa16.25■□□□□ 0.19
SMC1A-204ENST00000463684 USP11P51784 963 aa16.25■□□□□ 0.19
SMC1A-204ENST00000463684 AKAP17AQ02040 695 aaKnown RBP16.25■□□□□ 0.19
SMC1A-204ENST00000463684 PHLDB3Q6NSJ2 640 aa16.25■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms