RNA–Protein interactions for RNA: ENST00000462429.1

VPS41-210, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 3

Gene VPS41, Length 347 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-210ENST00000462429 MBD6Q96DN6 1003 aa5.52□□□□□ -1.53
VPS41-210ENST00000462429 TEKT5Q96M29 485 aa5.52□□□□□ -1.53
VPS41-210ENST00000462429 UIMC1Q96RL1 719 aa5.52□□□□□ -1.53
VPS41-210ENST00000462429 CAMKK2Q96RR4 588 aa5.52□□□□□ -1.53
VPS41-210ENST00000462429 FDXACB1Q9BRP7 624 aaPredicted RBP5.52□□□□□ -1.53
VPS41-210ENST00000462429 SOX7Q9BT81 388 aa5.52□□□□□ -1.53
VPS41-210ENST00000462429 OR10A2Q9H208 303 aa5.52□□□□□ -1.53
VPS41-210ENST00000462429 HNRNPLP14866 589 aaKnown RBP eCLIP5.51□□□□□ -1.53
VPS41-210ENST00000462429 VCAM1P19320 739 aa5.51□□□□□ -1.53
VPS41-210ENST00000462429 CCT2P78371 535 aaKnown RBP5.51□□□□□ -1.53
VPS41-210ENST00000462429 MEF2AQ02078 507 aaPredicted RBP5.51□□□□□ -1.53
VPS41-210ENST00000462429 ADAM15Q13444 863 aa5.51□□□□□ -1.53
VPS41-210ENST00000462429 PPP2R5AQ15172 486 aa5.51□□□□□ -1.53
VPS41-210ENST00000462429 ADRM1Q16186 407 aa5.51□□□□□ -1.53
VPS41-210ENST00000462429 NFE2Q16621 373 aaPredicted RBP5.51□□□□□ -1.53
VPS41-210ENST00000462429 MUM1L1Q5H9M0 696 aa5.51□□□□□ -1.53
VPS41-210ENST00000462429 GJC2Q5T442 439 aaPredicted RBP5.51□□□□□ -1.53
VPS41-210ENST00000462429 NT5DC1Q5TFE4 455 aa5.51□□□□□ -1.53
VPS41-210ENST00000462429 AGBL4Q5VU57 503 aa5.51□□□□□ -1.53
VPS41-210ENST00000462429 FAM180AQ6UWF9 173 aa5.51□□□□□ -1.53
VPS41-210ENST00000462429 BTNL9Q6UXG8 535 aa5.51□□□□□ -1.53
VPS41-210ENST00000462429 USP30Q70CQ3 517 aa5.51□□□□□ -1.53
VPS41-210ENST00000462429 PLEKHH3Q7Z736 793 aa5.51□□□□□ -1.53
VPS41-210ENST00000462429 KBTBD2Q8IY47 623 aa5.51□□□□□ -1.53
VPS41-210ENST00000462429 CPA6Q8N4T0 437 aa5.51□□□□□ -1.53
VPS41-210ENST00000462429 GCDHQ92947 438 aaPredicted RBP5.51□□□□□ -1.53
VPS41-210ENST00000462429 KIAA1683Q9H0B3 1180 aa5.51□□□□□ -1.53
VPS41-210ENST00000462429 CDH19Q9H159 772 aa5.51□□□□□ -1.53
VPS41-210ENST00000462429 TCF7L1Q9HCS4 588 aa5.51□□□□□ -1.53
VPS41-210ENST00000462429 USP40Q9NVE5 1235 aa5.51□□□□□ -1.53
VPS41-210ENST00000462429 ZIM2Q9NZV7 527 aa5.51□□□□□ -1.53
VPS41-210ENST00000462429 IP6K2Q9UHH9 426 aa5.51□□□□□ -1.53
VPS41-210ENST00000462429 ZNF180Q9UJW8 692 aa5.51□□□□□ -1.53
VPS41-210ENST00000462429 GIT1Q9Y2X7 761 aa5.51□□□□□ -1.53
VPS41-210ENST00000462429 NOBOXO60393 691 aa5.5□□□□□ -1.53
VPS41-210ENST00000462429 NDUFS2O75306 463 aa5.5□□□□□ -1.53
VPS41-210ENST00000462429 ABLIM3O94929 683 aa5.5□□□□□ -1.53
VPS41-210ENST00000462429 LY86O95711 162 aa5.5□□□□□ -1.53
VPS41-210ENST00000462429 ZSCAN20P17040 1043 aaPredicted RBP5.5□□□□□ -1.53
VPS41-210ENST00000462429 SLC16A1P53985 500 aa5.5□□□□□ -1.53
VPS41-210ENST00000462429 CD69Q07108 199 aa5.5□□□□□ -1.53
VPS41-210ENST00000462429 MALLQ13021 153 aa5.5□□□□□ -1.53
VPS41-210ENST00000462429 ODF1Q14990 250 aa5.5□□□□□ -1.53
VPS41-210ENST00000462429 CLEC14AQ86T13 490 aa5.5□□□□□ -1.53
VPS41-210ENST00000462429 C1QL4Q86Z23 238 aa5.5□□□□□ -1.53
VPS41-210ENST00000462429 RAVER1Q8IY67 606 aaKnown RBP5.5□□□□□ -1.53
VPS41-210ENST00000462429 CMTR2Q8IYT2 770 aaKnown RBP5.5□□□□□ -1.53
VPS41-210ENST00000462429 LGI4Q8N135 537 aa5.5□□□□□ -1.53
VPS41-210ENST00000462429 PLA2G15Q8NCC3 412 aa5.5□□□□□ -1.53
VPS41-210ENST00000462429 GLB1L3Q8NCI6 653 aaPredicted RBP5.5□□□□□ -1.53
VPS41-210ENST00000462429 SLC7A6OSQ96CW6 309 aaPredicted RBP5.5□□□□□ -1.53
VPS41-210ENST00000462429 SLC2A13Q96QE2 648 aa5.5□□□□□ -1.53
VPS41-210ENST00000462429 ADI1Q9BV57 179 aa5.5□□□□□ -1.53
VPS41-210ENST00000462429 GREM2Q9H772 168 aa5.5□□□□□ -1.53
VPS41-210ENST00000462429 C14orf93Q9H972 538 aaKnown RBP5.5□□□□□ -1.53
VPS41-210ENST00000462429 JADE2Q9NQC1 790 aa5.5□□□□□ -1.53
VPS41-210ENST00000462429 SAP30BPQ9UHR5 308 aaKnown RBP5.5□□□□□ -1.53
VPS41-210ENST00000462429 ANKRD6Q9Y2G4 727 aa5.5□□□□□ -1.53
VPS41-210ENST00000462429 PTPN22Q9Y2R2 807 aa5.5□□□□□ -1.53
VPS41-210ENST00000462429 CTDP1Q9Y5B0 961 aaPredicted RBP5.5□□□□□ -1.53
VPS41-210ENST00000462429 A0A1W2PR48 441 aa5.49□□□□□ -1.53
VPS41-210ENST00000462429 ARHGAP6O43182 974 aa5.49□□□□□ -1.53
VPS41-210ENST00000462429 SASH1O94885 1247 aa5.49□□□□□ -1.53
VPS41-210ENST00000462429 IL33O95760 270 aa5.49□□□□□ -1.53
VPS41-210ENST00000462429 LTA4HP09960 611 aaKnown RBP5.49□□□□□ -1.53
VPS41-210ENST00000462429 ZSCAN22P10073 491 aaPredicted RBP5.49□□□□□ -1.53
VPS41-210ENST00000462429 GAAP10253 952 aa5.49□□□□□ -1.53
VPS41-210ENST00000462429 C5AR1P21730 350 aa5.49□□□□□ -1.53
VPS41-210ENST00000462429 ADKP55263 362 aaKnown RBP5.49□□□□□ -1.53
VPS41-210ENST00000462429 CHPFQ8IZ52 775 aa5.49□□□□□ -1.53
VPS41-210ENST00000462429 MIER2Q8N344 545 aa5.49□□□□□ -1.53
VPS41-210ENST00000462429 PPM1NQ8N819 430 aa5.49□□□□□ -1.53
VPS41-210ENST00000462429 HSPBAP1Q96EW2 488 aa5.49□□□□□ -1.53
VPS41-210ENST00000462429 NUP88Q99567 741 aaPredicted RBP5.49□□□□□ -1.53
VPS41-210ENST00000462429 CSRNP2Q9H175 543 aa5.49□□□□□ -1.53
VPS41-210ENST00000462429 PNMA8BQ9ULN7 279 aaPredicted RBP5.49□□□□□ -1.53
VPS41-210ENST00000462429 NR2E1Q9Y466 385 aa5.49□□□□□ -1.53
VPS41-210ENST00000462429 RBM8AQ9Y5S9 174 aaKnown RBP5.49□□□□□ -1.53
VPS41-210ENST00000462429 SLC4A7Q9Y6M7 1214 aa5.49□□□□□ -1.53
VPS41-210ENST00000462429 B4GALT4O60513 344 aa5.48□□□□□ -1.53
VPS41-210ENST00000462429 PRAMEF4O60810 478 aa5.48□□□□□ -1.53
VPS41-210ENST00000462429 TRIM13O60858 407 aa5.48□□□□□ -1.53
VPS41-210ENST00000462429 RFPL1O75677 317 aa5.48□□□□□ -1.53
VPS41-210ENST00000462429 PARNO95453 639 aaKnown RBP5.48□□□□□ -1.53
VPS41-210ENST00000462429 PF4V1P10720 104 aa5.48□□□□□ -1.53
VPS41-210ENST00000462429 TCIRG1Q13488 830 aa5.48□□□□□ -1.53
VPS41-210ENST00000462429 NFYCQ13952 458 aa5.48□□□□□ -1.53
VPS41-210ENST00000462429 SURF1Q15526 300 aa5.48□□□□□ -1.53
VPS41-210ENST00000462429 KRTAP19-4Q3LI73 84 aa5.48□□□□□ -1.53
VPS41-210ENST00000462429 TAS1R1Q7RTX1 841 aa5.48□□□□□ -1.53
VPS41-210ENST00000462429 SIAH1Q8IUQ4 282 aa5.48□□□□□ -1.53
VPS41-210ENST00000462429 THEMISQ8N1K5 641 aaPredicted RBP5.48□□□□□ -1.53
VPS41-210ENST00000462429 MARCH10Q8NA82 808 aaPredicted RBP5.48□□□□□ -1.53
VPS41-210ENST00000462429 PIK3C3Q8NEB9 887 aa5.48□□□□□ -1.53
VPS41-210ENST00000462429 GPR156Q8NFN8 814 aa5.48□□□□□ -1.53
VPS41-210ENST00000462429 JPH3Q8WXH2 748 aaPredicted RBP5.48□□□□□ -1.53
VPS41-210ENST00000462429 RTFDC1Q9BY42 306 aaPredicted RBP5.48□□□□□ -1.53
VPS41-210ENST00000462429 RHOBTB2Q9BYZ6 727 aa5.48□□□□□ -1.53
VPS41-210ENST00000462429 SLC6A15Q9H2J7 730 aa5.48□□□□□ -1.53
VPS41-210ENST00000462429 RBM12Q9NTZ6 932 aaKnown RBP5.48□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms