RNA–Protein interactions for RNA: ENST00000460333.5

VPS13D-202, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 4,910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-202ENST00000460333 CUL4BQ13620 913 aa6.65□□□□□ -1.35
VPS13D-202ENST00000460333 UAP1Q16222 522 aaPredicted RBP6.65□□□□□ -1.35
VPS13D-202ENST00000460333 NAA35Q5VZE5 725 aa6.65□□□□□ -1.35
VPS13D-202ENST00000460333 USP17L6PQ6QN14 398 aa6.65□□□□□ -1.35
VPS13D-202ENST00000460333 PPP4R1Q8TF05 950 aa6.65□□□□□ -1.35
VPS13D-202ENST00000460333 P2RX5Q93086 422 aa6.65□□□□□ -1.35
VPS13D-202ENST00000460333 CYFIP2Q96F07 1278 aa6.65□□□□□ -1.35
VPS13D-202ENST00000460333 PANK4Q9NVE7 773 aa6.65□□□□□ -1.35
VPS13D-202ENST00000460333 LGALS16A8MUM7 142 aa6.65□□□□□ -1.35
VPS13D-202ENST00000460333 PODXLO00592 558 aa6.65□□□□□ -1.35
VPS13D-202ENST00000460333 LPXNO60711 386 aa6.65□□□□□ -1.35
VPS13D-202ENST00000460333 GMNNO75496 209 aa6.65□□□□□ -1.35
VPS13D-202ENST00000460333 ZWINTO95229 277 aa6.65□□□□□ -1.35
VPS13D-202ENST00000460333 CNGA1P29973 690 aa6.65□□□□□ -1.35
VPS13D-202ENST00000460333 SERPINB6P35237 376 aa6.65□□□□□ -1.35
VPS13D-202ENST00000460333 SLC7A5Q01650 507 aa6.65□□□□□ -1.35
VPS13D-202ENST00000460333 GRIN1Q05586 938 aa6.65□□□□□ -1.35
VPS13D-202ENST00000460333 TBC1D10BQ4KMP7 808 aaPredicted RBP6.65□□□□□ -1.35
VPS13D-202ENST00000460333 MMGT1Q8N4V1 131 aa6.65□□□□□ -1.35
VPS13D-202ENST00000460333 U2AF1L4Q8WU68 220 aaKnown RBP6.65□□□□□ -1.35
VPS13D-202ENST00000460333 RAD54LQ92698 747 aa6.65□□□□□ -1.35
VPS13D-202ENST00000460333 SEC16BQ96JE7 1060 aa6.65□□□□□ -1.35
VPS13D-202ENST00000460333 C7orf25Q9BPX7 421 aa6.65□□□□□ -1.35
VPS13D-202ENST00000460333 METTL14Q9HCE5 456 aaKnown RBP6.65□□□□□ -1.35
VPS13D-202ENST00000460333 CD248Q9HCU0 757 aa6.65□□□□□ -1.35
VPS13D-202ENST00000460333 NLRC4Q9NPP4 1024 aa6.65□□□□□ -1.35
VPS13D-202ENST00000460333 PNMA3Q9UL41 463 aa6.65□□□□□ -1.35
VPS13D-202ENST00000460333 KIAA1024Q9UPX6 916 aa6.65□□□□□ -1.35
VPS13D-202ENST00000460333 ARHGEF35A5YM69 484 aa6.64□□□□□ -1.35
VPS13D-202ENST00000460333 E7ENQ6 273 aa6.64□□□□□ -1.35
VPS13D-202ENST00000460333 FOXN1O15353 648 aa6.64□□□□□ -1.35
VPS13D-202ENST00000460333 TDP2O95551 362 aa6.64□□□□□ -1.35
VPS13D-202ENST00000460333 PDHA1P08559 390 aa6.64□□□□□ -1.35
VPS13D-202ENST00000460333 GMPSP49915 693 aaPredicted RBP6.64□□□□□ -1.35
VPS13D-202ENST00000460333 MAGOHP61326 146 aaKnown RBP6.64□□□□□ -1.35
VPS13D-202ENST00000460333 SF3A3Q12874 501 aaKnown RBP eCLIP6.64□□□□□ -1.35
VPS13D-202ENST00000460333 LAMB3Q13751 1172 aa6.64□□□□□ -1.35
VPS13D-202ENST00000460333 PREPLQ4J6C6 727 aaPredicted RBP6.64□□□□□ -1.35
VPS13D-202ENST00000460333 EARS2Q5JPH6 523 aaKnown RBP6.64□□□□□ -1.35
VPS13D-202ENST00000460333 FAM26FQ5R3K3 315 aa6.64□□□□□ -1.35
VPS13D-202ENST00000460333 NUGGCQ68CJ6 796 aa6.64□□□□□ -1.35
VPS13D-202ENST00000460333 USP49Q70CQ1 688 aa6.64□□□□□ -1.35
VPS13D-202ENST00000460333 ZFPM1Q8IX07 1006 aa6.64□□□□□ -1.35
VPS13D-202ENST00000460333 C7orf43Q8WVR3 580 aa6.64□□□□□ -1.35
VPS13D-202ENST00000460333 ATP2A3Q93084 1043 aa6.64□□□□□ -1.35
VPS13D-202ENST00000460333 MAGOHBQ96A72 148 aaKnown RBP6.64□□□□□ -1.35
VPS13D-202ENST00000460333 HAUS8Q9BT25 410 aa6.64□□□□□ -1.35
VPS13D-202ENST00000460333 SLITRK6Q9H5Y7 841 aa6.64□□□□□ -1.35
VPS13D-202ENST00000460333 KIF9Q9HAQ2 790 aa6.64□□□□□ -1.35
VPS13D-202ENST00000460333 IL1RAPL1Q9NZN1 696 aa6.64□□□□□ -1.35
VPS13D-202ENST00000460333 NDUFA13Q9P0J0 144 aa6.64□□□□□ -1.35
VPS13D-202ENST00000460333 KCNG1Q9UIX4 513 aa6.64□□□□□ -1.35
VPS13D-202ENST00000460333 RAB21Q9UL25 225 aa6.64□□□□□ -1.35
VPS13D-202ENST00000460333 ARL2BPQ9Y2Y0 163 aa6.64□□□□□ -1.35
VPS13D-202ENST00000460333 COL4A3BPQ9Y5P4 624 aa6.64□□□□□ -1.35
VPS13D-202ENST00000460333 ATRNL1Q5VV63 1379 aa6.64□□□□□ -1.35
VPS13D-202ENST00000460333 NAV1Q8NEY1 1877 aa6.64□□□□□ -1.35
VPS13D-202ENST00000460333 ATXN2Q99700 1313 aaKnown RBP6.64□□□□□ -1.35
VPS13D-202ENST00000460333 CCT8L1PA6NM43 557 aa6.64□□□□□ -1.35
VPS13D-202ENST00000460333 GAP43P17677 238 aa6.64□□□□□ -1.35
VPS13D-202ENST00000460333 GRAMD4Q6IC98 578 aa6.64□□□□□ -1.35
VPS13D-202ENST00000460333 REXO1L1PQ8IX06 675 aa6.64□□□□□ -1.35
VPS13D-202ENST00000460333 MIEF2Q96C03 454 aa6.64□□□□□ -1.35
VPS13D-202ENST00000460333 EIF2AQ9BY44 585 aaKnown RBP6.64□□□□□ -1.35
VPS13D-202ENST00000460333 TMEM39BQ9GZU3 492 aa6.64□□□□□ -1.35
VPS13D-202ENST00000460333 PPP2R3BQ9Y5P8 575 aa6.64□□□□□ -1.35
VPS13D-202ENST00000460333 SNED1Q8TER0 1413 aa6.64□□□□□ -1.35
VPS13D-202ENST00000460333 MYO5AQ9Y4I1 1855 aaKnown RBP6.64□□□□□ -1.35
VPS13D-202ENST00000460333 SRRM3A6NNA2 597 aaPredicted RBP6.64□□□□□ -1.35
VPS13D-202ENST00000460333 C19orf81C9J6K1 198 aa6.64□□□□□ -1.35
VPS13D-202ENST00000460333 ESRRAP11474 423 aaPredicted RBP6.64□□□□□ -1.35
VPS13D-202ENST00000460333 EIF4A3P38919 411 aaKnown RBP6.64□□□□□ -1.35
VPS13D-202ENST00000460333 ADCY8P40145 1251 aa6.64□□□□□ -1.35
VPS13D-202ENST00000460333 SARSP49591 514 aaKnown RBP6.64□□□□□ -1.35
VPS13D-202ENST00000460333 PAPOLAP51003 745 aaKnown RBP6.64□□□□□ -1.35
VPS13D-202ENST00000460333 GUCY1A3Q02108 690 aa6.64□□□□□ -1.35
VPS13D-202ENST00000460333 LRRC63Q05C16 580 aa6.64□□□□□ -1.35
VPS13D-202ENST00000460333 BYSLQ13895 437 aaKnown RBP6.64□□□□□ -1.35
VPS13D-202ENST00000460333 ITIH4Q14624 930 aa6.64□□□□□ -1.35
VPS13D-202ENST00000460333 NSMFQ6X4W1 530 aa6.64□□□□□ -1.35
VPS13D-202ENST00000460333 YTHDF3Q7Z739 585 aaKnown RBP6.64□□□□□ -1.35
VPS13D-202ENST00000460333 NUDCD1Q96RS6 583 aa6.64□□□□□ -1.35
VPS13D-202ENST00000460333 PAGR1Q9BTK6 254 aa6.64□□□□□ -1.35
VPS13D-202ENST00000460333 PITPNM3Q9BZ71 974 aa6.64□□□□□ -1.35
VPS13D-202ENST00000460333 KDM4CQ9H3R0 1056 aa6.64□□□□□ -1.35
VPS13D-202ENST00000460333 ZFATQ9P243 1243 aa6.64□□□□□ -1.35
VPS13D-202ENST00000460333 GGA2Q9UJY4 613 aa6.64□□□□□ -1.35
VPS13D-202ENST00000460333 PACSIN2Q9UNF0 486 aaPredicted RBP6.64□□□□□ -1.35
VPS13D-202ENST00000460333 TRPC6Q9Y210 931 aa6.64□□□□□ -1.35
VPS13D-202ENST00000460333 C10orf71Q711Q0 1435 aa6.64□□□□□ -1.35
VPS13D-202ENST00000460333 RHOBTB3O94955 611 aa6.64□□□□□ -1.35
VPS13D-202ENST00000460333 ACADSP16219 412 aa6.64□□□□□ -1.35
VPS13D-202ENST00000460333 AP2B1P63010 937 aa6.64□□□□□ -1.35
VPS13D-202ENST00000460333 PHEXP78562 749 aa6.64□□□□□ -1.35
VPS13D-202ENST00000460333 DR1Q01658 176 aa6.64□□□□□ -1.35
VPS13D-202ENST00000460333 ARHGEF16Q5VV41 709 aa6.64□□□□□ -1.35
VPS13D-202ENST00000460333 MAP7D3Q8IWC1 876 aa6.64□□□□□ -1.35
VPS13D-202ENST00000460333 ZNF577Q9BSK1 485 aa6.64□□□□□ -1.35
VPS13D-202ENST00000460333 MAP3K20Q9NYL2 800 aaKnown RBP6.64□□□□□ -1.35
VPS13D-202ENST00000460333 A0A1B0GTH6 734 aa6.63□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 286.9 ms