RNA–Protein interactions for RNA: ENST00000460265.5

LMNB1-203, Transcript of lamin B1, humanhuman

TSL 1 (best)

Gene LMNB1, Length 3,475 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMNB1-203ENST00000460265 SLC35C1Q96A29 364 aa16.66■□□□□ 0.26
LMNB1-203ENST00000460265 HSD17B14Q9BPX1 270 aa16.66■□□□□ 0.26
LMNB1-203ENST00000460265 DDX47Q9H0S4 455 aaKnown RBP16.66■□□□□ 0.26
LMNB1-203ENST00000460265 STIM2Q9P246 746 aa16.66■□□□□ 0.26
LMNB1-203ENST00000460265 HPDP32754 393 aaPredicted RBP16.65■□□□□ 0.26
LMNB1-203ENST00000460265 FMO5P49326 533 aa16.65■□□□□ 0.26
LMNB1-203ENST00000460265 CBWD1Q9BRT8 395 aa16.65■□□□□ 0.26
LMNB1-203ENST00000460265 EDEM3Q9BZQ6 932 aa16.65■□□□□ 0.26
LMNB1-203ENST00000460265 AGPAT3Q9NRZ7 376 aa16.65■□□□□ 0.26
LMNB1-203ENST00000460265 SEPT9Q9UHD8 586 aaPredicted RBP16.65■□□□□ 0.26
LMNB1-203ENST00000460265 AMFRQ9UKV5 643 aa16.65■□□□□ 0.26
LMNB1-203ENST00000460265 GOLGA8KD6RF30 607 aa16.65■□□□□ 0.26
LMNB1-203ENST00000460265 AGPSO00116 658 aa16.65■□□□□ 0.26
LMNB1-203ENST00000460265 HNRNPDLO14979 420 aaKnown RBP16.65■□□□□ 0.26
LMNB1-203ENST00000460265 CCNI2Q6ZMN8 369 aaPredicted RBP16.65■□□□□ 0.26
LMNB1-203ENST00000460265 CCDC121Q6ZUS5 278 aa16.65■□□□□ 0.26
LMNB1-203ENST00000460265 ZNF720Q7Z2F6 126 aa16.65■□□□□ 0.26
LMNB1-203ENST00000460265 HAUS6Q7Z4H7 955 aa16.65■□□□□ 0.26
LMNB1-203ENST00000460265 NAGPAQ9UK23 515 aa16.65■□□□□ 0.26
LMNB1-203ENST00000460265 BZW2Q9Y6E2 419 aaKnown RBP16.65■□□□□ 0.26
LMNB1-203ENST00000460265 SMCHD1A6NHR9 2005 aa16.65■□□□□ 0.26
LMNB1-203ENST00000460265 VIL1P09327 827 aaKnown RBP16.65■□□□□ 0.26
LMNB1-203ENST00000460265 FERP16591 822 aa16.65■□□□□ 0.26
LMNB1-203ENST00000460265 YWHABP31946 246 aaKnown RBP16.65■□□□□ 0.26
LMNB1-203ENST00000460265 CDK17Q00537 523 aa16.65■□□□□ 0.26
LMNB1-203ENST00000460265 MKRN4PQ13434 485 aaPredicted RBP16.65■□□□□ 0.26
LMNB1-203ENST00000460265 MESDQ14696 234 aa16.65■□□□□ 0.26
LMNB1-203ENST00000460265 MTERF2Q49AM1 385 aa16.65■□□□□ 0.26
LMNB1-203ENST00000460265 HGSNATQ68CP4 663 aa16.65■□□□□ 0.26
LMNB1-203ENST00000460265 LMBRD2Q68DH5 695 aaPredicted RBP16.65■□□□□ 0.26
LMNB1-203ENST00000460265 CYFIP1Q7L576 1253 aa16.65■□□□□ 0.26
LMNB1-203ENST00000460265 RNF10Q8N5U6 811 aaKnown RBP16.65■□□□□ 0.26
LMNB1-203ENST00000460265 UBLCP1Q8WVY7 318 aaPredicted RBP16.65■□□□□ 0.26
LMNB1-203ENST00000460265 PAGR1Q9BTK6 254 aa16.65■□□□□ 0.26
LMNB1-203ENST00000460265 SLC40A1Q9NP59 571 aa16.65■□□□□ 0.26
LMNB1-203ENST00000460265 TSKSQ9UJT2 592 aa16.65■□□□□ 0.26
LMNB1-203ENST00000460265 PSMD10O75832 226 aa16.64■□□□□ 0.25
LMNB1-203ENST00000460265 SF3A3Q12874 501 aaKnown RBP eCLIP16.64■□□□□ 0.25
LMNB1-203ENST00000460265 HYIQ5T013 277 aa16.64■□□□□ 0.25
LMNB1-203ENST00000460265 SEPT14Q6ZU15 432 aa16.64■□□□□ 0.25
LMNB1-203ENST00000460265 FAM84AQ96KN4 292 aa16.64■□□□□ 0.25
LMNB1-203ENST00000460265 WRAP73Q9P2S5 460 aaPredicted RBP16.64■□□□□ 0.25
LMNB1-203ENST00000460265 DDX20Q9UHI6 824 aaKnown RBP16.64■□□□□ 0.25
LMNB1-203ENST00000460265 TNNI1P19237 187 aa16.64■□□□□ 0.25
LMNB1-203ENST00000460265 CIITAP33076 1130 aa16.64■□□□□ 0.25
LMNB1-203ENST00000460265 GALCP54803 685 aa16.64■□□□□ 0.25
LMNB1-203ENST00000460265 IFFO1Q0D2I5 559 aa16.64■□□□□ 0.25
LMNB1-203ENST00000460265 SWSAP1Q6NVH7 229 aa16.64■□□□□ 0.25
LMNB1-203ENST00000460265 C1orf186Q6ZWK4 172 aa16.64■□□□□ 0.25
LMNB1-203ENST00000460265 GABBR1Q9UBS5 961 aa16.64■□□□□ 0.25
LMNB1-203ENST00000460265 TRAF3IP3Q9Y228 551 aa16.64■□□□□ 0.25
LMNB1-203ENST00000460265 KIAA1551Q9HCM1 1747 aa16.64■□□□□ 0.25
LMNB1-203ENST00000460265 ASTN1O14525 1302 aa16.64■□□□□ 0.25
LMNB1-203ENST00000460265 TLDC2A0PJX2 215 aa16.64■□□□□ 0.25
LMNB1-203ENST00000460265 TGFB1I1O43294 461 aa16.64■□□□□ 0.25
LMNB1-203ENST00000460265 SPOPO43791 374 aa16.64■□□□□ 0.25
LMNB1-203ENST00000460265 CARSP49589 748 aaKnown RBP16.64■□□□□ 0.25
LMNB1-203ENST00000460265 GMPSP49915 693 aaPredicted RBP16.64■□□□□ 0.25
LMNB1-203ENST00000460265 NAB2Q15742 525 aa16.64■□□□□ 0.25
LMNB1-203ENST00000460265 CCDC13Q8IYE1 715 aa16.64■□□□□ 0.25
LMNB1-203ENST00000460265 ANKRD35Q8N283 1001 aa16.64■□□□□ 0.25
LMNB1-203ENST00000460265 RSRC1Q96IZ7 334 aaKnown RBP16.64■□□□□ 0.25
LMNB1-203ENST00000460265 ACCSQ96QU6 501 aa16.64■□□□□ 0.25
LMNB1-203ENST00000460265 INTS2Q9H0H0 1204 aaKnown RBP16.64■□□□□ 0.25
LMNB1-203ENST00000460265 KMT5AQ9NQR1 393 aa16.64■□□□□ 0.25
LMNB1-203ENST00000460265 PCDHA2Q9Y5H9 948 aa16.64■□□□□ 0.25
LMNB1-203ENST00000460265 WNK3Q9BYP7 1800 aa16.63■□□□□ 0.25
LMNB1-203ENST00000460265 IGLV3-22A0A075B6J6 115 aa16.63■□□□□ 0.25
LMNB1-203ENST00000460265 CBWD6Q4V339 395 aa16.63■□□□□ 0.25
LMNB1-203ENST00000460265 CBWD3Q5JTY5 395 aa16.63■□□□□ 0.25
LMNB1-203ENST00000460265 CBWD5Q5RIA9 395 aa16.63■□□□□ 0.25
LMNB1-203ENST00000460265 DDX42Q86XP3 938 aaKnown RBP eCLIP16.63■□□□□ 0.25
LMNB1-203ENST00000460265 SPDL1Q96EA4 605 aa16.63■□□□□ 0.25
LMNB1-203ENST00000460265 ZNF668Q96K58 619 aaPredicted RBP16.63■□□□□ 0.25
LMNB1-203ENST00000460265 POP1Q99575 1024 aaKnown RBP16.63■□□□□ 0.25
LMNB1-203ENST00000460265 KIF9Q9HAQ2 790 aa16.63■□□□□ 0.25
LMNB1-203ENST00000460265 OSGEPQ9NPF4 335 aa16.63■□□□□ 0.25
LMNB1-203ENST00000460265 TMOD4Q9NZQ9 345 aa16.63■□□□□ 0.25
LMNB1-203ENST00000460265 GRIN2DO15399 1336 aa16.63■□□□□ 0.25
LMNB1-203ENST00000460265 COPB2P35606 906 aa16.63■□□□□ 0.25
LMNB1-203ENST00000460265 MXI1P50539 228 aa16.63■□□□□ 0.25
LMNB1-203ENST00000460265 DMP1Q13316 513 aaPredicted RBP16.63■□□□□ 0.25
LMNB1-203ENST00000460265 TKFCQ3LXA3 575 aa16.63■□□□□ 0.25
LMNB1-203ENST00000460265 PARP9Q8IXQ6 854 aa16.63■□□□□ 0.25
LMNB1-203ENST00000460265 CCDC113Q9H0I3 377 aa16.63■□□□□ 0.25
LMNB1-203ENST00000460265 ACP6Q9NPH0 428 aa16.63■□□□□ 0.25
LMNB1-203ENST00000460265 COL20A1Q9P218 1284 aa16.63■□□□□ 0.25
LMNB1-203ENST00000460265 HACL1Q9UJ83 578 aa16.63■□□□□ 0.25
LMNB1-203ENST00000460265 ATP9AO75110 1047 aa16.62■□□□□ 0.25
LMNB1-203ENST00000460265 ICAM1P05362 532 aa16.62■□□□□ 0.25
LMNB1-203ENST00000460265 SSTR3P32745 418 aaPredicted RBP16.62■□□□□ 0.25
LMNB1-203ENST00000460265 FKBP1AP62942 108 aaKnown RBP16.62■□□□□ 0.25
LMNB1-203ENST00000460265 BTNL9Q6UXG8 535 aa16.62■□□□□ 0.25
LMNB1-203ENST00000460265 UHMK1Q8TAS1 419 aaKnown RBP16.62■□□□□ 0.25
LMNB1-203ENST00000460265 FNBP1Q96RU3 617 aa16.62■□□□□ 0.25
LMNB1-203ENST00000460265 DENND3A2RUS2 1198 aa16.62■□□□□ 0.25
LMNB1-203ENST00000460265 A6NNZ2 444 aa16.62■□□□□ 0.25
LMNB1-203ENST00000460265 FOXN3O00409 490 aaPredicted RBP16.62■□□□□ 0.25
LMNB1-203ENST00000460265 VAMP7P51809 220 aa16.62■□□□□ 0.25
LMNB1-203ENST00000460265 TUBB8Q3ZCM7 444 aa16.62■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms