RNA–Protein interactions for RNA: ENST00000457104.6

VEGFA-210, Transcript of vascular endothelial growth factor A, human

TSL 1 (best) BASIC

Gene VEGFA, Length 414 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VEGFA-210	ENST00000457104	NRIP1	P48552	1158 aa		13.8	□□□□□ -0.2
VEGFA-210	ENST00000457104	ZNF174	Q15697	407 aa		13.8	□□□□□ -0.2
VEGFA-210	ENST00000457104	SRGAP1	Q7Z6B7	1085 aa		13.8	□□□□□ -0.2
VEGFA-210	ENST00000457104	RBM23	Q86U06	439 aa	Known RBP	13.8	□□□□□ -0.2
VEGFA-210	ENST00000457104	EFHB	Q8N7U6	833 aa		13.8	□□□□□ -0.2
VEGFA-210	ENST00000457104	RNF149	Q8NC42	400 aa		13.8	□□□□□ -0.2
VEGFA-210	ENST00000457104	PIGO	Q8TEQ8	1089 aa		13.8	□□□□□ -0.2
VEGFA-210	ENST00000457104	MRPS27	Q92552	414 aa	Known RBP	13.8	□□□□□ -0.2
VEGFA-210	ENST00000457104	MSLNL	Q96KJ4	702 aa		13.8	□□□□□ -0.2
VEGFA-210	ENST00000457104	MTR	Q99707	1265 aa		13.8	□□□□□ -0.2
VEGFA-210	ENST00000457104	TLR9	Q9NR96	1032 aa		13.8	□□□□□ -0.2
VEGFA-210	ENST00000457104	FAM105A	Q9NUU6	356 aa		13.8	□□□□□ -0.2
VEGFA-210	ENST00000457104	CLEC1B	Q9P126	229 aa		13.8	□□□□□ -0.2
VEGFA-210	ENST00000457104	LZTS1	Q9Y250	596 aa		13.8	□□□□□ -0.2
VEGFA-210	ENST00000457104	SKI	P12755	728 aa		13.79	□□□□□ -0.2
VEGFA-210	ENST00000457104	XRCC6	P12956	609 aa	Known RBP eCLIP	13.79	□□□□□ -0.2	3e-10	■□□□□ 9
VEGFA-210	ENST00000457104	U2AF2	P26368	475 aa	Known RBP eCLIP	13.79	□□□□□ -0.2	2e-48	■□□□□ 11.2
VEGFA-210	ENST00000457104	ARL2	P36404	184 aa		13.79	□□□□□ -0.2
VEGFA-210	ENST00000457104	RARRES1	P49788	294 aa		13.79	□□□□□ -0.2
VEGFA-210	ENST00000457104	PTEN	P60484	403 aa		13.79	□□□□□ -0.2
VEGFA-210	ENST00000457104	CLUL1	Q15846	466 aa		13.79	□□□□□ -0.2
VEGFA-210	ENST00000457104	LONRF3	Q496Y0	759 aa		13.79	□□□□□ -0.2
VEGFA-210	ENST00000457104	UBXN11	Q5T124	520 aa		13.79	□□□□□ -0.2
VEGFA-210	ENST00000457104	CATSPER3	Q86XQ3	398 aa		13.79	□□□□□ -0.2
VEGFA-210	ENST00000457104	IFNLR1	Q8IU57	520 aa	Predicted RBP	13.79	□□□□□ -0.2
VEGFA-210	ENST00000457104	NOSTRIN	Q8IVI9	506 aa		13.79	□□□□□ -0.2
VEGFA-210	ENST00000457104	C4orf32	Q8N8J7	132 aa		13.79	□□□□□ -0.2
VEGFA-210	ENST00000457104	ZNF558	Q96NG5	402 aa		13.79	□□□□□ -0.2
VEGFA-210	ENST00000457104	EPHX3	Q9H6B9	360 aa		13.79	□□□□□ -0.2
VEGFA-210	ENST00000457104	TLE6	Q9H808	572 aa		13.79	□□□□□ -0.2
VEGFA-210	ENST00000457104	PCDHB2	Q9Y5E7	798 aa		13.79	□□□□□ -0.2
VEGFA-210	ENST00000457104	PER2	O15055	1255 aa		13.78	□□□□□ -0.2
VEGFA-210	ENST00000457104	MBTPS2	O43462	519 aa		13.78	□□□□□ -0.2
VEGFA-210	ENST00000457104	MED24	O75448	989 aa		13.78	□□□□□ -0.2
VEGFA-210	ENST00000457104	OFD1	O75665	1012 aa		13.78	□□□□□ -0.2
VEGFA-210	ENST00000457104	DGAT1	O75907	488 aa		13.78	□□□□□ -0.2
VEGFA-210	ENST00000457104	CD2BP2	O95400	341 aa	Known RBP	13.78	□□□□□ -0.2
VEGFA-210	ENST00000457104	OR52Z1	P0C646	297 aa		13.78	□□□□□ -0.2
VEGFA-210	ENST00000457104	TEC	P42680	631 aa		13.78	□□□□□ -0.2
VEGFA-210	ENST00000457104	TOB1	P50616	345 aa	Predicted RBP	13.78	□□□□□ -0.2
VEGFA-210	ENST00000457104	RAB27A	P51159	221 aa		13.78	□□□□□ -0.2
VEGFA-210	ENST00000457104	BCAR1	P56945	870 aa		13.78	□□□□□ -0.2
VEGFA-210	ENST00000457104	RBM10	P98175	930 aa	Known RBP	13.78	□□□□□ -0.2
VEGFA-210	ENST00000457104	POU5F1B	Q06416	359 aa		13.78	□□□□□ -0.2
VEGFA-210	ENST00000457104	ORC2	Q13416	577 aa	Predicted RBP	13.78	□□□□□ -0.2
VEGFA-210	ENST00000457104	CAPS	Q13938	189 aa		13.78	□□□□□ -0.2
VEGFA-210	ENST00000457104	MXD4	Q14582	209 aa	Predicted RBP	13.78	□□□□□ -0.2
VEGFA-210	ENST00000457104	NBR1	Q14596	966 aa		13.78	□□□□□ -0.2
VEGFA-210	ENST00000457104	RABEP1	Q15276	862 aa		13.78	□□□□□ -0.2
VEGFA-210	ENST00000457104	PDE12	Q6L8Q7	609 aa	Known RBP	13.78	□□□□□ -0.2
VEGFA-210	ENST00000457104	AGMO	Q6ZNB7	445 aa		13.78	□□□□□ -0.2
VEGFA-210	ENST00000457104	MRPL10	Q7Z7H8	261 aa	Known RBP	13.78	□□□□□ -0.2
VEGFA-210	ENST00000457104	GJD3	Q8N144	294 aa		13.78	□□□□□ -0.2
VEGFA-210	ENST00000457104	SLC39A11	Q8N1S5	342 aa		13.78	□□□□□ -0.2
VEGFA-210	ENST00000457104	FAM184A	Q8NB25	1140 aa		13.78	□□□□□ -0.2
VEGFA-210	ENST00000457104	VN1R2	Q8NFZ6	395 aa		13.78	□□□□□ -0.2
VEGFA-210	ENST00000457104	ASAP3	Q8TDY4	903 aa		13.78	□□□□□ -0.2
VEGFA-210	ENST00000457104	MICAL1	Q8TDZ2	1067 aa		13.78	□□□□□ -0.2
VEGFA-210	ENST00000457104	PPP2R3C	Q969Q6	453 aa		13.78	□□□□□ -0.2
VEGFA-210	ENST00000457104	POLR3C	Q9BUI4	534 aa	Predicted RBP	13.78	□□□□□ -0.2
VEGFA-210	ENST00000457104	TUFT1	Q9NNX1	390 aa		13.78	□□□□□ -0.2
VEGFA-210	ENST00000457104	SPG21	Q9NZD8	308 aa		13.78	□□□□□ -0.2
VEGFA-210	ENST00000457104	C19orf67	A6NJJ6	358 aa		13.77	□□□□□ -0.21
VEGFA-210	ENST00000457104	NT5C1B-RDH14	C9J2C7	533 aa		13.77	□□□□□ -0.21
VEGFA-210	ENST00000457104	B4GALT3	O60512	393 aa		13.77	□□□□□ -0.21
VEGFA-210	ENST00000457104	EYA4	O95677	639 aa		13.77	□□□□□ -0.21
VEGFA-210	ENST00000457104	GLRA2	P23416	452 aa		13.77	□□□□□ -0.21
VEGFA-210	ENST00000457104	PPM1A	P35813	382 aa		13.77	□□□□□ -0.21
VEGFA-210	ENST00000457104	TRAPPC10	P48553	1259 aa		13.77	□□□□□ -0.21
VEGFA-210	ENST00000457104	AFF1	P51825	1210 aa	Known RBP	13.77	□□□□□ -0.21
VEGFA-210	ENST00000457104	ZP2	Q05996	745 aa		13.77	□□□□□ -0.21
VEGFA-210	ENST00000457104	KCNC3	Q14003	757 aa		13.77	□□□□□ -0.21
VEGFA-210	ENST00000457104	SMAD2	Q15796	467 aa	Known RBP	13.77	□□□□□ -0.21
VEGFA-210	ENST00000457104	AMHR2	Q16671	573 aa		13.77	□□□□□ -0.21
VEGFA-210	ENST00000457104	DUSP6	Q16828	381 aa		13.77	□□□□□ -0.21
VEGFA-210	ENST00000457104	NOMO2	Q5JPE7	1267 aa		13.77	□□□□□ -0.21
VEGFA-210	ENST00000457104	TTC38	Q5R3I4	469 aa		13.77	□□□□□ -0.21
VEGFA-210	ENST00000457104	GLB1L	Q6UWU2	654 aa		13.77	□□□□□ -0.21
VEGFA-210	ENST00000457104	MRPL9	Q9BYD2	267 aa	Known RBP	13.77	□□□□□ -0.21
VEGFA-210	ENST00000457104	NRDE2	Q9H7Z3	1164 aa		13.77	□□□□□ -0.21
VEGFA-210	ENST00000457104	TBC1D13	Q9NVG8	400 aa		13.77	□□□□□ -0.21
VEGFA-210	ENST00000457104	PRKAG3	Q9UGI9	489 aa		13.77	□□□□□ -0.21
VEGFA-210	ENST00000457104	CD207	Q9UJ71	328 aa		13.77	□□□□□ -0.21
VEGFA-210	ENST00000457104	FAM50B	Q9Y247	325 aa		13.77	□□□□□ -0.21
VEGFA-210	ENST00000457104	HIDE1	A8MVS5	230 aa		13.76	□□□□□ -0.21
VEGFA-210	ENST00000457104	TSPAN1	O60635	241 aa		13.76	□□□□□ -0.21
VEGFA-210	ENST00000457104	RPA1	P27694	616 aa		13.76	□□□□□ -0.21
VEGFA-210	ENST00000457104	ALDH7A1	P49419	539 aa	Known RBP	13.76	□□□□□ -0.21
VEGFA-210	ENST00000457104	NDUFV1	P49821	464 aa		13.76	□□□□□ -0.21
VEGFA-210	ENST00000457104	KRT17	Q04695	432 aa		13.76	□□□□□ -0.21
VEGFA-210	ENST00000457104	MBTD1	Q05BQ5	628 aa		13.76	□□□□□ -0.21
VEGFA-210	ENST00000457104	COASY	Q13057	564 aa		13.76	□□□□□ -0.21
VEGFA-210	ENST00000457104	SMAD4	Q13485	552 aa	Known RBP	13.76	□□□□□ -0.21
VEGFA-210	ENST00000457104	PLPP4	Q5VZY2	271 aa		13.76	□□□□□ -0.21
VEGFA-210	ENST00000457104	POTEG	Q6S5H5	508 aa		13.76	□□□□□ -0.21
VEGFA-210	ENST00000457104	TMEM173	Q86WV6	379 aa	Predicted RBP	13.76	□□□□□ -0.21
VEGFA-210	ENST00000457104	ADHFE1	Q8IWW8	467 aa		13.76	□□□□□ -0.21
VEGFA-210	ENST00000457104	SMRP1	Q8NCR6	262 aa		13.76	□□□□□ -0.21
VEGFA-210	ENST00000457104	SMG8	Q8ND04	991 aa	Known RBP	13.76	□□□□□ -0.21
VEGFA-210	ENST00000457104	RSPH1	Q8WYR4	309 aa		13.76	□□□□□ -0.21

Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms