RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 KTN1Q86UP2 1357 aaKnown RBP5.28□□□□□ -1.56
CCDC88A-209ENST00000456975 EDC4Q6P2E9 1401 aaKnown RBP5.28□□□□□ -1.56
CCDC88A-209ENST00000456975 COL5A2P05997 1499 aaPredicted RBP5.28□□□□□ -1.56
CCDC88A-209ENST00000456975 ARPC4-TTLL3A0A0A6YYG9 625 aa5.28□□□□□ -1.56
CCDC88A-209ENST00000456975 TMEM221A6NGB7 291 aa5.28□□□□□ -1.56
CCDC88A-209ENST00000456975 GFRA2O00451 464 aa5.28□□□□□ -1.56
CCDC88A-209ENST00000456975 BIN1O00499 593 aa5.28□□□□□ -1.56
CCDC88A-209ENST00000456975 CASQ2O14958 399 aaPredicted RBP5.28□□□□□ -1.56
CCDC88A-209ENST00000456975 ERC2O15083 957 aa5.28□□□□□ -1.56
CCDC88A-209ENST00000456975 NBNO60934 754 aa5.28□□□□□ -1.56
CCDC88A-209ENST00000456975 DNAJC8O75937 253 aaPredicted RBP5.28□□□□□ -1.56
CCDC88A-209ENST00000456975 KRT13P13646 458 aa5.28□□□□□ -1.56
CCDC88A-209ENST00000456975 NEK4P51957 841 aa5.28□□□□□ -1.56
CCDC88A-209ENST00000456975 RAC1P63000 192 aa5.28□□□□□ -1.56
CCDC88A-209ENST00000456975 PFKPQ01813 784 aa5.28□□□□□ -1.56
CCDC88A-209ENST00000456975 PPIDQ08752 370 aaKnown RBP5.28□□□□□ -1.56
CCDC88A-209ENST00000456975 NCAPHQ15003 741 aa5.28□□□□□ -1.56
CCDC88A-209ENST00000456975 LRRC14Q15048 493 aa5.28□□□□□ -1.56
CCDC88A-209ENST00000456975 MLC1Q15049 377 aa5.28□□□□□ -1.56
CCDC88A-209ENST00000456975 SLC15A2Q16348 729 aa5.28□□□□□ -1.56
CCDC88A-209ENST00000456975 LONRF2Q1L5Z9 754 aa5.28□□□□□ -1.56
CCDC88A-209ENST00000456975 Q4G0T1 1027 aa5.28□□□□□ -1.56
CCDC88A-209ENST00000456975 NLRC3Q7RTR2 1065 aa5.28□□□□□ -1.56
CCDC88A-209ENST00000456975 TMC6Q7Z403 805 aa5.28□□□□□ -1.56
CCDC88A-209ENST00000456975 NANOGNBQ7Z5D8 188 aa5.28□□□□□ -1.56
CCDC88A-209ENST00000456975 FGD2Q7Z6J4 655 aa5.28□□□□□ -1.56
CCDC88A-209ENST00000456975 AADATQ8N5Z0 425 aa5.28□□□□□ -1.56
CCDC88A-209ENST00000456975 CTNNBL1Q8WYA6 563 aaPredicted RBP5.28□□□□□ -1.56
CCDC88A-209ENST00000456975 UQCC2Q9BRT2 126 aa5.28□□□□□ -1.56
CCDC88A-209ENST00000456975 KCTD10Q9H3F6 313 aa5.28□□□□□ -1.56
CCDC88A-209ENST00000456975 PANK3Q9H999 370 aa5.28□□□□□ -1.56
CCDC88A-209ENST00000456975 DDX21Q9NR30 783 aaKnown RBP eCLIP5.28□□□□□ -1.56
CCDC88A-209ENST00000456975 SH2B1Q9NRF2 756 aaPredicted RBP5.28□□□□□ -1.56
CCDC88A-209ENST00000456975 TRHDEQ9UKU6 1024 aa5.28□□□□□ -1.56
CCDC88A-209ENST00000456975 CCPG1Q9ULG6 757 aa5.28□□□□□ -1.56
CCDC88A-209ENST00000456975 CARD8Q9Y2G2 431 aa5.28□□□□□ -1.56
CCDC88A-209ENST00000456975 TACC3Q9Y6A5 838 aa5.28□□□□□ -1.56
CCDC88A-209ENST00000456975 PLEKHG2Q9H7P9 1386 aa5.28□□□□□ -1.56
CCDC88A-209ENST00000456975 SLIT3O75094 1523 aa5.27□□□□□ -1.57
CCDC88A-209ENST00000456975 USP54Q70EL1 1684 aa5.27□□□□□ -1.57
CCDC88A-209ENST00000456975 DNAJC25-GNG10A0A024R161 153 aa5.27□□□□□ -1.57
CCDC88A-209ENST00000456975 TRBV23-1A0A0A0MS06 115 aa5.27□□□□□ -1.57
CCDC88A-209ENST00000456975 KRBA1A5PL33 1030 aa5.27□□□□□ -1.57
CCDC88A-209ENST00000456975 F8W031 263 aaPredicted RBP5.27□□□□□ -1.57
CCDC88A-209ENST00000456975 GABRDO14764 452 aa5.27□□□□□ -1.57
CCDC88A-209ENST00000456975 CAPN5O15484 640 aaPredicted RBP5.27□□□□□ -1.57
CCDC88A-209ENST00000456975 CPP00450 1065 aa5.27□□□□□ -1.57
CCDC88A-209ENST00000456975 PARP1P09874 1014 aaKnown RBP5.27□□□□□ -1.57
CCDC88A-209ENST00000456975 BMP1P13497 986 aa5.27□□□□□ -1.57
CCDC88A-209ENST00000456975 EIF2AK2P19525 551 aaKnown RBP5.27□□□□□ -1.57
CCDC88A-209ENST00000456975 ATP5DP30049 168 aa5.27□□□□□ -1.57
CCDC88A-209ENST00000456975 HSD17B2P37059 387 aa5.27□□□□□ -1.57
CCDC88A-209ENST00000456975 SEPHS1P49903 392 aa5.27□□□□□ -1.57
CCDC88A-209ENST00000456975 PPP2R2AP63151 447 aa5.27□□□□□ -1.57
CCDC88A-209ENST00000456975 TNP2Q05952 138 aa5.27□□□□□ -1.57
CCDC88A-209ENST00000456975 STK3Q13188 491 aa5.27□□□□□ -1.57
CCDC88A-209ENST00000456975 GPS2Q13227 327 aa5.27□□□□□ -1.57
CCDC88A-209ENST00000456975 NMIQ13287 307 aaPredicted RBP5.27□□□□□ -1.57
CCDC88A-209ENST00000456975 BTG3Q14201 252 aaPredicted RBP5.27□□□□□ -1.57
CCDC88A-209ENST00000456975 TXNRD1Q16881 649 aa5.27□□□□□ -1.57
CCDC88A-209ENST00000456975 BBS9Q3SYG4 887 aa5.27□□□□□ -1.57
CCDC88A-209ENST00000456975 LRFN4Q6PJG9 635 aa5.27□□□□□ -1.57
CCDC88A-209ENST00000456975 RIPOR1Q6ZS17 1223 aa5.27□□□□□ -1.57
CCDC88A-209ENST00000456975 PPFIBP1Q86W92 1011 aa5.27□□□□□ -1.57
CCDC88A-209ENST00000456975 OSTM1Q86WC4 334 aa5.27□□□□□ -1.57
CCDC88A-209ENST00000456975 IQCA1Q86XH1 822 aa5.27□□□□□ -1.57
CCDC88A-209ENST00000456975 GRAMD2AQ8IUY3 354 aa5.27□□□□□ -1.57
CCDC88A-209ENST00000456975 TPH2Q8IWU9 490 aa5.27□□□□□ -1.57
CCDC88A-209ENST00000456975 CYP4X1Q8N118 509 aa5.27□□□□□ -1.57
CCDC88A-209ENST00000456975 KIF18AQ8NI77 898 aa5.27□□□□□ -1.57
CCDC88A-209ENST00000456975 GPBAR1Q8TDU6 330 aa5.27□□□□□ -1.57
CCDC88A-209ENST00000456975 SLC7A3Q8WY07 619 aa5.27□□□□□ -1.57
CCDC88A-209ENST00000456975 ACSBG1Q96GR2 724 aa5.27□□□□□ -1.57
CCDC88A-209ENST00000456975 CEP295NLQ96MC4 621 aa5.27□□□□□ -1.57
CCDC88A-209ENST00000456975 ZMAT2Q96NC0 199 aaKnown RBP5.27□□□□□ -1.57
CCDC88A-209ENST00000456975 HERC2P3Q9BVR0 1158 aa5.27□□□□□ -1.57
CCDC88A-209ENST00000456975 PLVAPQ9BX97 442 aa5.27□□□□□ -1.57
CCDC88A-209ENST00000456975 BICC1Q9H694 974 aaKnown RBP5.27□□□□□ -1.57
CCDC88A-209ENST00000456975 GMIPQ9P107 970 aa5.27□□□□□ -1.57
CCDC88A-209ENST00000456975 LCMT1Q9UIC8 334 aa5.27□□□□□ -1.57
CCDC88A-209ENST00000456975 TNPO3Q9Y5L0 923 aaKnown RBP5.27□□□□□ -1.57
CCDC88A-209ENST00000456975 SNCAIPQ9Y6H5 919 aa5.27□□□□□ -1.57
CCDC88A-209ENST00000456975 GAKO14976 1311 aa5.27□□□□□ -1.57
CCDC88A-209ENST00000456975 KIF7Q2M1P5 1343 aa5.27□□□□□ -1.57
CCDC88A-209ENST00000456975 CRB1P82279 1406 aa5.27□□□□□ -1.57
CCDC88A-209ENST00000456975 GOLGA8AA7E2F4 631 aa5.27□□□□□ -1.57
CCDC88A-209ENST00000456975 CHURC1-FNTBB4DL54 471 aa5.27□□□□□ -1.57
CCDC88A-209ENST00000456975 VIMP08670 466 aaKnown RBP5.27□□□□□ -1.57
CCDC88A-209ENST00000456975 HSPA8P11142 646 aaKnown RBP5.27□□□□□ -1.57
CCDC88A-209ENST00000456975 PLCG1P19174 1290 aa5.27□□□□□ -1.57
CCDC88A-209ENST00000456975 CD86P42081 329 aa5.27□□□□□ -1.57
CCDC88A-209ENST00000456975 MCM2P49736 904 aa5.27□□□□□ -1.57
CCDC88A-209ENST00000456975 LRP8Q14114 963 aa5.27□□□□□ -1.57
CCDC88A-209ENST00000456975 NEDD9Q14511 834 aa5.27□□□□□ -1.57
CCDC88A-209ENST00000456975 IMMTQ16891 758 aaKnown RBP5.27□□□□□ -1.57
CCDC88A-209ENST00000456975 FNDC3BQ53EP0 1204 aaKnown RBP5.27□□□□□ -1.57
CCDC88A-209ENST00000456975 EFHC2Q5JST6 749 aa5.27□□□□□ -1.57
CCDC88A-209ENST00000456975 VPS53Q5VIR6 699 aa5.27□□□□□ -1.57
CCDC88A-209ENST00000456975 RAPH1Q70E73 1250 aa5.27□□□□□ -1.57
CCDC88A-209ENST00000456975 PTF1AQ7RTS3 328 aa5.27□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms