RNA–Protein interactions for RNA: ENST00000455727.6

LDLR-202, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-202ENST00000455727 GGCXP38435 758 aa16.35■□□□□ 0.21
LDLR-202ENST00000455727 GMPSP49915 693 aaPredicted RBP16.35■□□□□ 0.21
LDLR-202ENST00000455727 EPC2Q52LR7 807 aa16.35■□□□□ 0.21
LDLR-202ENST00000455727 NBPF12Q5TAG4 269 aaPredicted RBP16.35■□□□□ 0.21
LDLR-202ENST00000455727 TAF3Q5VWG9 929 aa16.35■□□□□ 0.21
LDLR-202ENST00000455727 EIF1ADQ8N9N8 165 aaKnown RBP16.35■□□□□ 0.21
LDLR-202ENST00000455727 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP16.35■□□□□ 0.21
LDLR-202ENST00000455727 RFFLQ8WZ73 363 aa16.35■□□□□ 0.21
LDLR-202ENST00000455727 C12orf42Q96LP6 360 aa16.35■□□□□ 0.21
LDLR-202ENST00000455727 CBWD1Q9BRT8 395 aa16.35■□□□□ 0.21
LDLR-202ENST00000455727 MOV10L1Q9BXT6 1211 aaKnown RBP16.35■□□□□ 0.21
LDLR-202ENST00000455727 MAF1Q9H063 256 aa16.35■□□□□ 0.21
LDLR-202ENST00000455727 PCIF1Q9H4Z3 704 aa16.35■□□□□ 0.21
LDLR-202ENST00000455727 RNF146Q9NTX7 359 aa16.35■□□□□ 0.21
LDLR-202ENST00000455727 CNOT7Q9UIV1 285 aaKnown RBP16.35■□□□□ 0.21
LDLR-202ENST00000455727 ADAMTS5Q9UNA0 930 aa16.35■□□□□ 0.21
LDLR-202ENST00000455727 EXOC7Q9UPT5 735 aa16.35■□□□□ 0.21
LDLR-202ENST00000455727 KIAA1217Q5T5P2 1943 aa16.35■□□□□ 0.21
LDLR-202ENST00000455727 PHIPQ8WWQ0 1821 aa16.35■□□□□ 0.21
LDLR-202ENST00000455727 ERICH4A6NGS2 130 aa16.35■□□□□ 0.21
LDLR-202ENST00000455727 CCND2P30279 289 aa16.35■□□□□ 0.21
LDLR-202ENST00000455727 DNA2P51530 1060 aa16.35■□□□□ 0.21
LDLR-202ENST00000455727 DLG4P78352 724 aa16.35■□□□□ 0.21
LDLR-202ENST00000455727 ALS2CLQ60I27 953 aa16.35■□□□□ 0.21
LDLR-202ENST00000455727 NSMFQ6X4W1 530 aa16.35■□□□□ 0.21
LDLR-202ENST00000455727 SAMD7Q7Z3H4 446 aa16.35■□□□□ 0.21
LDLR-202ENST00000455727 NT5DC3Q86UY8 548 aa16.35■□□□□ 0.21
LDLR-202ENST00000455727 RASGEF1CQ8N431 466 aa16.35■□□□□ 0.21
LDLR-202ENST00000455727 ZNF280CQ8ND82 737 aa16.35■□□□□ 0.21
LDLR-202ENST00000455727 REPS2Q8NFH8 660 aa16.35■□□□□ 0.21
LDLR-202ENST00000455727 ATG4CQ96DT6 458 aa16.35■□□□□ 0.21
LDLR-202ENST00000455727 HES6Q96HZ4 224 aa16.35■□□□□ 0.21
LDLR-202ENST00000455727 KRT12Q99456 494 aa16.35■□□□□ 0.21
LDLR-202ENST00000455727 C17orf75Q9HAS0 396 aa16.35■□□□□ 0.21
LDLR-202ENST00000455727 FOXN3O00409 490 aaPredicted RBP16.34■□□□□ 0.21
LDLR-202ENST00000455727 HEXIM1O94992 359 aaKnown RBP16.34■□□□□ 0.21
LDLR-202ENST00000455727 TNFAIP3P21580 790 aa16.34■□□□□ 0.21
LDLR-202ENST00000455727 LMAN1P49257 510 aa16.34■□□□□ 0.21
LDLR-202ENST00000455727 PEX3P56589 373 aa16.34■□□□□ 0.21
LDLR-202ENST00000455727 PPP3CAQ08209 521 aa16.34■□□□□ 0.21
LDLR-202ENST00000455727 PAK2Q13177 524 aa16.34■□□□□ 0.21
LDLR-202ENST00000455727 BAATQ14032 418 aaPredicted RBP16.34■□□□□ 0.21
LDLR-202ENST00000455727 XKR9Q5GH70 373 aa16.34■□□□□ 0.21
LDLR-202ENST00000455727 C1orf220Q5T0J3 134 aa16.34■□□□□ 0.21
LDLR-202ENST00000455727 NLRX1Q86UT6 975 aa16.34■□□□□ 0.21
LDLR-202ENST00000455727 DNAAF5Q86Y56 855 aa16.34■□□□□ 0.21
LDLR-202ENST00000455727 METTL13Q8N6R0 699 aa16.34■□□□□ 0.21
LDLR-202ENST00000455727 CTNNBL1Q8WYA6 563 aaPredicted RBP16.34■□□□□ 0.21
LDLR-202ENST00000455727 HINFPQ9BQA5 517 aa16.34■□□□□ 0.21
LDLR-202ENST00000455727 NTPCRQ9BSD7 190 aaKnown RBP16.34■□□□□ 0.21
LDLR-202ENST00000455727 RIPK3Q9Y572 518 aa16.34■□□□□ 0.21
LDLR-202ENST00000455727 PCDHA10Q9Y5I2 948 aa16.34■□□□□ 0.21
LDLR-202ENST00000455727 TESPA1A2RU30 521 aaPredicted RBP16.34■□□□□ 0.21
LDLR-202ENST00000455727 DKC1O60832 514 aaKnown RBP eCLIP16.34■□□□□ 0.21
LDLR-202ENST00000455727 PHACTR2O75167 634 aa16.34■□□□□ 0.21
LDLR-202ENST00000455727 SMTNP53814 917 aa16.34■□□□□ 0.21
LDLR-202ENST00000455727 MRPS25P82663 173 aaKnown RBP16.34■□□□□ 0.21
LDLR-202ENST00000455727 OTUD6AQ7L8S5 288 aa16.34■□□□□ 0.21
LDLR-202ENST00000455727 BUD13Q9BRD0 619 aaKnown RBP eCLIP16.34■□□□□ 0.215e-8■□□□□ 11.1
LDLR-202ENST00000455727 FAM204AQ9H8W3 233 aa16.34■□□□□ 0.21
LDLR-202ENST00000455727 EPB41L5Q9HCM4 733 aa16.34■□□□□ 0.21
LDLR-202ENST00000455727 ANKRD62A6NC57 917 aa16.33■□□□□ 0.2
LDLR-202ENST00000455727 TISP43B9A030 160 aa16.33■□□□□ 0.2
LDLR-202ENST00000455727 CCDC188H7C350 402 aa16.33■□□□□ 0.2
LDLR-202ENST00000455727 FZD9O00144 591 aa16.33■□□□□ 0.2
LDLR-202ENST00000455727 PGRMC1O00264 195 aaKnown RBP16.33■□□□□ 0.2
LDLR-202ENST00000455727 SLC16A4O15374 487 aa16.33■□□□□ 0.2
LDLR-202ENST00000455727 NR3C2P08235 984 aa16.33■□□□□ 0.2
LDLR-202ENST00000455727 PTPRAP18433 802 aa16.33■□□□□ 0.2
LDLR-202ENST00000455727 HADHBP55084 474 aaKnown RBP16.33■□□□□ 0.2
LDLR-202ENST00000455727 PPATQ06203 517 aa16.33■□□□□ 0.2
LDLR-202ENST00000455727 TCEAL1Q15170 157 aa16.33■□□□□ 0.2
LDLR-202ENST00000455727 ARHGAP44Q17R89 818 aa16.33■□□□□ 0.2
LDLR-202ENST00000455727 TBC1D10BQ4KMP7 808 aaPredicted RBP16.33■□□□□ 0.2
LDLR-202ENST00000455727 DAAM2Q86T65 1068 aa16.33■□□□□ 0.2
LDLR-202ENST00000455727 GOLGA6L1Q8N7Z2 621 aa16.33■□□□□ 0.2
LDLR-202ENST00000455727 SLC35G2Q8TBE7 412 aa16.33■□□□□ 0.2
LDLR-202ENST00000455727 SPIRE2Q8WWL2 714 aa16.33■□□□□ 0.2
LDLR-202ENST00000455727 AGPAT1Q99943 283 aa16.33■□□□□ 0.2
LDLR-202ENST00000455727 UBE2TQ9NPD8 197 aaPredicted RBP16.33■□□□□ 0.2
LDLR-202ENST00000455727 CALCOCO1Q9P1Z2 691 aa16.33■□□□□ 0.2
LDLR-202ENST00000455727 TTC7AQ9ULT0 858 aaPredicted RBP16.33■□□□□ 0.2
LDLR-202ENST00000455727 TBX20Q9UMR3 447 aa16.33■□□□□ 0.2
LDLR-202ENST00000455727 DIS3Q9Y2L1 958 aaKnown RBP16.33■□□□□ 0.2
LDLR-202ENST00000455727 ARID2Q68CP9 1835 aa16.33■□□□□ 0.2
LDLR-202ENST00000455727 C19orf81C9J6K1 198 aa16.33■□□□□ 0.2
LDLR-202ENST00000455727 ATP2A1O14983 1001 aa16.33■□□□□ 0.2
LDLR-202ENST00000455727 CEP104O60308 925 aa16.33■□□□□ 0.2
LDLR-202ENST00000455727 DSG3P32926 999 aa16.33■□□□□ 0.2
LDLR-202ENST00000455727 GUCY2DQ02846 1103 aa16.33■□□□□ 0.2
LDLR-202ENST00000455727 FAM102BQ5T8I3 360 aa16.33■□□□□ 0.2
LDLR-202ENST00000455727 ANO5Q75V66 913 aa16.33■□□□□ 0.2
LDLR-202ENST00000455727 MAP4K3Q8IVH8 894 aa16.33■□□□□ 0.2
LDLR-202ENST00000455727 TMEM161BQ8NDZ6 487 aa16.33■□□□□ 0.2
LDLR-202ENST00000455727 KIFAP3Q92845 792 aa16.33■□□□□ 0.2
LDLR-202ENST00000455727 WNK4Q96J92 1243 aa16.33■□□□□ 0.2
LDLR-202ENST00000455727 SH3GL2Q99962 352 aa16.33■□□□□ 0.2
LDLR-202ENST00000455727 GOLPH3Q9H4A6 298 aa16.33■□□□□ 0.2
LDLR-202ENST00000455727 GPRC5CQ9NQ84 441 aa16.33■□□□□ 0.2
LDLR-202ENST00000455727 PICK1Q9NRD5 415 aa16.33■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms