RNA–Protein interactions for RNA: ENST00000454468.5

SMPD4-213, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 1 (best)

Gene SMPD4, Length 3,586 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-213ENST00000454468 NOC2LQ9Y3T9 749 aaKnown RBP12.96□□□□□ -0.33
SMPD4-213ENST00000454468 LAMB2P55268 1798 aa12.96□□□□□ -0.34
SMPD4-213ENST00000454468 DDX3XO00571 662 aaKnown RBP eCLIP12.96□□□□□ -0.342e-8■□□□□ 8.3
SMPD4-213ENST00000454468 BUB1BO60566 1050 aaPredicted RBP12.96□□□□□ -0.34
SMPD4-213ENST00000454468 VIL1P09327 827 aaKnown RBP12.96□□□□□ -0.34
SMPD4-213ENST00000454468 EPHB4P54760 987 aa12.96□□□□□ -0.34
SMPD4-213ENST00000454468 CDK17Q00537 523 aa12.96□□□□□ -0.34
SMPD4-213ENST00000454468 RNF187Q5TA31 235 aaPredicted RBP12.96□□□□□ -0.34
SMPD4-213ENST00000454468 AADACL2Q6P093 401 aa12.96□□□□□ -0.34
SMPD4-213ENST00000454468 MOXD1Q6UVY6 613 aa12.96□□□□□ -0.34
SMPD4-213ENST00000454468 ZBTB33Q86T24 672 aa12.96□□□□□ -0.34
SMPD4-213ENST00000454468 DHX38Q92620 1227 aaKnown RBP12.96□□□□□ -0.34
SMPD4-213ENST00000454468 GLG1Q92896 1179 aa12.96□□□□□ -0.34
SMPD4-213ENST00000454468 SCLT1Q96NL6 688 aa12.96□□□□□ -0.34
SMPD4-213ENST00000454468 PPANQ9NQ55 473 aaKnown RBP12.96□□□□□ -0.34
SMPD4-213ENST00000454468 H0YHG0 523 aa12.95□□□□□ -0.34
SMPD4-213ENST00000454468 SART1O43290 800 aaKnown RBP12.95□□□□□ -0.34
SMPD4-213ENST00000454468 NR3C2P08235 984 aa12.95□□□□□ -0.34
SMPD4-213ENST00000454468 CCT5P48643 541 aa12.95□□□□□ -0.34
SMPD4-213ENST00000454468 PLTPP55058 493 aa12.95□□□□□ -0.34
SMPD4-213ENST00000454468 ITGB3BPQ13352 177 aaPredicted RBP12.95□□□□□ -0.34
SMPD4-213ENST00000454468 R3HDM1Q15032 1099 aaKnown RBP12.95□□□□□ -0.34
SMPD4-213ENST00000454468 POTEAQ6S8J7 498 aa12.95□□□□□ -0.34
SMPD4-213ENST00000454468 PALB2Q86YC2 1186 aa12.95□□□□□ -0.34
SMPD4-213ENST00000454468 CCDC105Q8IYK2 499 aa12.95□□□□□ -0.34
SMPD4-213ENST00000454468 ZNF653Q96CK0 615 aa12.95□□□□□ -0.34
SMPD4-213ENST00000454468 MRRFQ96E11 262 aaKnown RBP12.95□□□□□ -0.34
SMPD4-213ENST00000454468 EDEM3Q9BZQ6 932 aa12.95□□□□□ -0.34
SMPD4-213ENST00000454468 MED4Q9NPJ6 270 aa12.95□□□□□ -0.34
SMPD4-213ENST00000454468 TTI1O43156 1089 aa12.95□□□□□ -0.34
SMPD4-213ENST00000454468 LMNB1P20700 586 aa12.95□□□□□ -0.34
SMPD4-213ENST00000454468 IRF2BP2Q7Z5L9 587 aa12.95□□□□□ -0.34
SMPD4-213ENST00000454468 CDR2LQ86X02 465 aaPredicted RBP12.95□□□□□ -0.34
SMPD4-213ENST00000454468 BCAS4Q8TDM0 211 aa12.95□□□□□ -0.34
SMPD4-213ENST00000454468 HNRNPLLQ8WVV9 542 aaKnown RBP12.95□□□□□ -0.34
SMPD4-213ENST00000454468 ARL8AQ96BM9 186 aa12.95□□□□□ -0.34
SMPD4-213ENST00000454468 FAM118BQ9BPY3 351 aa12.95□□□□□ -0.34
SMPD4-213ENST00000454468 APEX2Q9UBZ4 518 aa12.95□□□□□ -0.34
SMPD4-213ENST00000454468 SNX24Q9Y343 169 aa12.95□□□□□ -0.34
SMPD4-213ENST00000454468 UTP11Q9Y3A2 253 aaKnown RBP12.95□□□□□ -0.34
SMPD4-213ENST00000454468 WDR64B1ANS9 1081 aa12.95□□□□□ -0.34
SMPD4-213ENST00000454468 MAP2K7O14733 419 aa12.95□□□□□ -0.34
SMPD4-213ENST00000454468 CIITAP33076 1130 aa12.95□□□□□ -0.34
SMPD4-213ENST00000454468 ACTN2P35609 894 aa12.95□□□□□ -0.34
SMPD4-213ENST00000454468 RARRES1P49788 294 aa12.95□□□□□ -0.34
SMPD4-213ENST00000454468 MKRN3Q13064 507 aaKnown RBP12.95□□□□□ -0.34
SMPD4-213ENST00000454468 HYIQ5T013 277 aa12.95□□□□□ -0.34
SMPD4-213ENST00000454468 TSEN2Q8NCE0 465 aaKnown RBP12.95□□□□□ -0.34
SMPD4-213ENST00000454468 SLC5A5Q92911 643 aa12.95□□□□□ -0.34
SMPD4-213ENST00000454468 EXOC4Q96A65 974 aa12.95□□□□□ -0.34
SMPD4-213ENST00000454468 GTF2A1P52655 376 aaPredicted RBP12.94□□□□□ -0.34
SMPD4-213ENST00000454468 IGBP1P78318 339 aa12.94□□□□□ -0.34
SMPD4-213ENST00000454468 NNTQ13423 1086 aa12.94□□□□□ -0.34
SMPD4-213ENST00000454468 OTUD6AQ7L8S5 288 aa12.94□□□□□ -0.34
SMPD4-213ENST00000454468 ARHGEF19Q8IW93 802 aa12.94□□□□□ -0.34
SMPD4-213ENST00000454468 CCDC26Q8TAB7 109 aa12.94□□□□□ -0.34
SMPD4-213ENST00000454468 CCDC114Q96M63 670 aa12.94□□□□□ -0.34
SMPD4-213ENST00000454468 HGSO14964 777 aaPredicted RBP12.94□□□□□ -0.34
SMPD4-213ENST00000454468 SRGAP2CP0DJJ0 459 aa12.94□□□□□ -0.34
SMPD4-213ENST00000454468 PPP3CAQ08209 521 aa12.94□□□□□ -0.34
SMPD4-213ENST00000454468 STRN3Q13033 797 aa12.94□□□□□ -0.34
SMPD4-213ENST00000454468 KRT71Q3SY84 523 aa12.94□□□□□ -0.34
SMPD4-213ENST00000454468 WDR93Q6P2C0 686 aa12.94□□□□□ -0.34
SMPD4-213ENST00000454468 ARHGEF26Q96DR7 871 aa12.94□□□□□ -0.34
SMPD4-213ENST00000454468 RANBP17Q9H2T7 1088 aaKnown RBP12.94□□□□□ -0.34
SMPD4-213ENST00000454468 TMEM206Q9H813 350 aa12.94□□□□□ -0.34
SMPD4-213ENST00000454468 COL5A3P25940 1745 aaPredicted RBP12.94□□□□□ -0.34
SMPD4-213ENST00000454468 DDX60LQ5H9U9 1706 aaKnown RBP12.94□□□□□ -0.34
SMPD4-213ENST00000454468 NDUFAB1O14561 156 aa12.94□□□□□ -0.34
SMPD4-213ENST00000454468 SGPL1O95470 568 aa12.94□□□□□ -0.34
SMPD4-213ENST00000454468 CD58P19256 250 aa12.94□□□□□ -0.34
SMPD4-213ENST00000454468 HNRNPH3P31942 346 aaKnown RBP12.94□□□□□ -0.34
SMPD4-213ENST00000454468 SLCO1A2P46721 670 aa12.94□□□□□ -0.34
SMPD4-213ENST00000454468 ADCY1Q08828 1119 aa12.94□□□□□ -0.34
SMPD4-213ENST00000454468 PPP1R7Q15435 360 aa12.94□□□□□ -0.34
SMPD4-213ENST00000454468 PHLDB3Q6NSJ2 640 aa12.94□□□□□ -0.34
SMPD4-213ENST00000454468 SYCE1Q8N0S2 351 aa12.94□□□□□ -0.34
SMPD4-213ENST00000454468 DEPTORQ8TB45 409 aa12.94□□□□□ -0.34
SMPD4-213ENST00000454468 GOLGA5Q8TBA6 731 aa12.94□□□□□ -0.34
SMPD4-213ENST00000454468 MAGOHBQ96A72 148 aaKnown RBP12.94□□□□□ -0.34
SMPD4-213ENST00000454468 SELENOSQ9BQE4 189 aa12.94□□□□□ -0.34
SMPD4-213ENST00000454468 MRIQ9BWK5 157 aa12.94□□□□□ -0.34
SMPD4-213ENST00000454468 AIPL1Q9NZN9 384 aa12.94□□□□□ -0.34
SMPD4-213ENST00000454468 EXOC7Q9UPT5 735 aa12.94□□□□□ -0.34
SMPD4-213ENST00000454468 KIAA1551Q9HCM1 1747 aa12.93□□□□□ -0.34
SMPD4-213ENST00000454468 GSTTP1A0A1W2PQM5 241 aa12.93□□□□□ -0.34
SMPD4-213ENST00000454468 F8VZ95 297 aa12.93□□□□□ -0.34
SMPD4-213ENST00000454468 PSMC5P62195 406 aa12.93□□□□□ -0.34
SMPD4-213ENST00000454468 DHX9Q08211 1270 aaKnown RBP12.93□□□□□ -0.34
SMPD4-213ENST00000454468 DCAF15Q66K64 600 aa12.93□□□□□ -0.34
SMPD4-213ENST00000454468 BTNL9Q6UXG8 535 aa12.93□□□□□ -0.34
SMPD4-213ENST00000454468 INTS8Q75QN2 995 aaKnown RBP12.93□□□□□ -0.34
SMPD4-213ENST00000454468 TPCN2Q8NHX9 752 aa12.93□□□□□ -0.34
SMPD4-213ENST00000454468 CASKIN2Q8WXE0 1202 aa12.93□□□□□ -0.34
SMPD4-213ENST00000454468 STK33Q9BYT3 514 aa12.93□□□□□ -0.34
SMPD4-213ENST00000454468 GGA3Q9NZ52 723 aa12.93□□□□□ -0.34
SMPD4-213ENST00000454468 WDR46O15213 610 aaKnown RBP12.93□□□□□ -0.34
SMPD4-213ENST00000454468 CNGA1P29973 690 aa12.93□□□□□ -0.34
SMPD4-213ENST00000454468 MRPS9P82933 396 aaKnown RBP12.93□□□□□ -0.34
SMPD4-213ENST00000454468 SNRNP35Q16560 246 aaKnown RBP12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms