RNA–Protein interactions for RNA: ENST00000447654.5

HMGA1-205, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 2,159 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-205ENST00000447654 FOXR2Q6PJQ5 311 aa20.66■□□□□ 0.9
HMGA1-205ENST00000447654 SMC1BQ8NDV3 1235 aa20.66■□□□□ 0.9
HMGA1-205ENST00000447654 LRRC8CQ8TDW0 803 aa20.66■□□□□ 0.9
HMGA1-205ENST00000447654 IRGQQ8WZA9 623 aa20.66■□□□□ 0.9
HMGA1-205ENST00000447654 LRRC4CQ9HCJ2 640 aa20.66■□□□□ 0.9
HMGA1-205ENST00000447654 AMACRQ9UHK6 382 aa20.66■□□□□ 0.9
HMGA1-205ENST00000447654 TRPC5Q9UL62 973 aaPredicted RBP20.66■□□□□ 0.9
HMGA1-205ENST00000447654 USP17L8P0C7I0 530 aa20.65■□□□□ 0.9
HMGA1-205ENST00000447654 YY1P25490 414 aa20.65■□□□□ 0.9
HMGA1-205ENST00000447654 IFNAR2P48551 515 aa20.65■□□□□ 0.9
HMGA1-205ENST00000447654 DNA2P51530 1060 aa20.65■□□□□ 0.9
HMGA1-205ENST00000447654 IFI35P80217 286 aaPredicted RBP20.65■□□□□ 0.9
HMGA1-205ENST00000447654 MCL1Q07820 350 aa20.65■□□□□ 0.9
HMGA1-205ENST00000447654 UCMAQ8WVF2 138 aa20.65■□□□□ 0.9
HMGA1-205ENST00000447654 OLFM3Q96PB7 478 aa20.65■□□□□ 0.9
HMGA1-205ENST00000447654 DDX23Q9BUQ8 820 aaKnown RBP20.65■□□□□ 0.9
HMGA1-205ENST00000447654 TLE6Q9H808 572 aa20.65■□□□□ 0.9
HMGA1-205ENST00000447654 NLRC4Q9NPP4 1024 aa20.65■□□□□ 0.9
HMGA1-205ENST00000447654 USP40Q9NVE5 1235 aa20.65■□□□□ 0.9
HMGA1-205ENST00000447654 GGT7Q9UJ14 662 aa20.65■□□□□ 0.9
HMGA1-205ENST00000447654 DIS3Q9Y2L1 958 aaKnown RBP20.65■□□□□ 0.9
HMGA1-205ENST00000447654 SMAPO00193 183 aa20.65■□□□□ 0.9
HMGA1-205ENST00000447654 TTI1O43156 1089 aa20.65■□□□□ 0.9
HMGA1-205ENST00000447654 IFIT1BQ5T764 474 aaKnown RBP20.65■□□□□ 0.9
HMGA1-205ENST00000447654 DUPD1Q68J44 220 aa20.65■□□□□ 0.9
HMGA1-205ENST00000447654 CENPKQ9BS16 269 aa20.65■□□□□ 0.9
HMGA1-205ENST00000447654 UTP3Q9NQZ2 479 aaKnown RBP eCLIP20.65■□□□□ 0.91e-6■■■■■ 47.4
HMGA1-205ENST00000447654 CCDC88AQ3V6T2 1871 aa20.64■□□□□ 0.9
HMGA1-205ENST00000447654 KIAA1551Q9HCM1 1747 aa20.64■□□□□ 0.89
HMGA1-205ENST00000447654 RASA1P20936 1047 aa20.64■□□□□ 0.89
HMGA1-205ENST00000447654 IL17AQ16552 155 aa20.64■□□□□ 0.89
HMGA1-205ENST00000447654 NAALADL2Q58DX5 795 aa20.64■□□□□ 0.89
HMGA1-205ENST00000447654 RASIP1Q5U651 963 aa20.64■□□□□ 0.89
HMGA1-205ENST00000447654 INTS8Q75QN2 995 aaKnown RBP20.64■□□□□ 0.89
HMGA1-205ENST00000447654 KIAA0825Q8IV33 1275 aa20.64■□□□□ 0.89
HMGA1-205ENST00000447654 LRRC57Q8N9N7 239 aa20.64■□□□□ 0.89
HMGA1-205ENST00000447654 CRNKL1Q9BZJ0 848 aaKnown RBP20.64■□□□□ 0.89
HMGA1-205ENST00000447654 QTRT2Q9H974 415 aaKnown RBP20.64■□□□□ 0.89
HMGA1-205ENST00000447654 SUCLA2Q9P2R7 463 aaPredicted RBP20.64■□□□□ 0.89
HMGA1-205ENST00000447654 PACSIN2Q9UNF0 486 aaPredicted RBP20.64■□□□□ 0.89
HMGA1-205ENST00000447654 ATP9AO75110 1047 aa20.63■□□□□ 0.89
HMGA1-205ENST00000447654 GM2AP17900 193 aa20.63■□□□□ 0.89
HMGA1-205ENST00000447654 RASA3Q14644 834 aa20.63■□□□□ 0.89
HMGA1-205ENST00000447654 CHADLQ6NUI6 762 aa20.63■□□□□ 0.89
HMGA1-205ENST00000447654 CEP128Q6ZU80 1094 aa20.63■□□□□ 0.89
HMGA1-205ENST00000447654 DZIP1Q86YF9 867 aaKnown RBP20.63■□□□□ 0.89
HMGA1-205ENST00000447654 LRRC43Q8N309 656 aa20.63■□□□□ 0.89
HMGA1-205ENST00000447654 RNF25Q96BH1 459 aaPredicted RBP20.63■□□□□ 0.89
HMGA1-205ENST00000447654 CCSER1Q9C0I3 900 aa20.63■□□□□ 0.89
HMGA1-205ENST00000447654 DDX43Q9NXZ2 648 aaKnown RBP20.63■□□□□ 0.89
HMGA1-205ENST00000447654 PARP2Q9UGN5 583 aa20.63■□□□□ 0.89
HMGA1-205ENST00000447654 YARSP54577 528 aaKnown RBP20.63■□□□□ 0.89
HMGA1-205ENST00000447654 KLRC3Q07444 240 aa20.63■□□□□ 0.89
HMGA1-205ENST00000447654 MTFR1Q15390 333 aa20.63■□□□□ 0.89
HMGA1-205ENST00000447654 CRY2Q49AN0 593 aa20.63■□□□□ 0.89
HMGA1-205ENST00000447654 CENPPQ6IPU0 288 aa20.63■□□□□ 0.89
HMGA1-205ENST00000447654 PROM2Q8N271 834 aa20.63■□□□□ 0.89
HMGA1-205ENST00000447654 WDR66Q8TBY9 1149 aa20.63■□□□□ 0.89
HMGA1-205ENST00000447654 SH3RF3Q8TEJ3 882 aaPredicted RBP20.63■□□□□ 0.89
HMGA1-205ENST00000447654 ERP44Q9BS26 406 aa20.63■□□□□ 0.89
HMGA1-205ENST00000447654 AP1M1Q9BXS5 423 aa20.63■□□□□ 0.89
HMGA1-205ENST00000447654 OCEL1Q9H607 264 aa20.63■□□□□ 0.89
HMGA1-205ENST00000447654 TLDC2A0PJX2 215 aa20.62■□□□□ 0.89
HMGA1-205ENST00000447654 WNT7AO00755 349 aa20.62■□□□□ 0.89
HMGA1-205ENST00000447654 OATP04181 439 aa20.62■□□□□ 0.89
HMGA1-205ENST00000447654 SERPINB2P05120 415 aa20.62■□□□□ 0.89
HMGA1-205ENST00000447654 SULT2A1Q06520 285 aa20.62■□□□□ 0.89
HMGA1-205ENST00000447654 DHX34Q14147 1143 aaKnown RBP20.62■□□□□ 0.89
HMGA1-205ENST00000447654 MAP7Q14244 749 aa20.62■□□□□ 0.89
HMGA1-205ENST00000447654 TMC4Q7Z404 712 aa20.62■□□□□ 0.89
HMGA1-205ENST00000447654 METTL13Q8N6R0 699 aa20.62■□□□□ 0.89
HMGA1-205ENST00000447654 RMDN2Q96LZ7 410 aa20.62■□□□□ 0.89
HMGA1-205ENST00000447654 RUNDC3BQ96NL0 473 aa20.62■□□□□ 0.89
HMGA1-205ENST00000447654 METTL14Q9HCE5 456 aaKnown RBP20.62■□□□□ 0.89
HMGA1-205ENST00000447654 DYNC1LI1Q9Y6G9 523 aaKnown RBP20.62■□□□□ 0.89
HMGA1-205ENST00000447654 TMEM221A6NGB7 291 aa20.62■□□□□ 0.89
HMGA1-205ENST00000447654 RASGRF2O14827 1237 aa20.62■□□□□ 0.89
HMGA1-205ENST00000447654 VEGFAP15692 232 aaPredicted RBP20.62■□□□□ 0.89
HMGA1-205ENST00000447654 ADRA2BP18089 450 aa20.62■□□□□ 0.89
HMGA1-205ENST00000447654 PTENP60484 403 aa20.62■□□□□ 0.89
HMGA1-205ENST00000447654 SLFN11Q7Z7L1 901 aa20.62■□□□□ 0.89
HMGA1-205ENST00000447654 SYCE1Q8N0S2 351 aa20.62■□□□□ 0.89
HMGA1-205ENST00000447654 PPFIBP2Q8ND30 876 aa20.62■□□□□ 0.89
HMGA1-205ENST00000447654 SLC17A8Q8NDX2 589 aa20.62■□□□□ 0.89
HMGA1-205ENST00000447654 DYNLL2Q96FJ2 89 aa20.62■□□□□ 0.89
HMGA1-205ENST00000447654 HIC2Q96JB3 615 aa20.62■□□□□ 0.89
HMGA1-205ENST00000447654 MCM9Q9NXL9 1143 aa20.62■□□□□ 0.89
HMGA1-205ENST00000447654 V9GY48 417 aaPredicted RBP20.62■□□□□ 0.89
HMGA1-205ENST00000447654 MAST2Q6P0Q8 1798 aa20.62■□□□□ 0.89
HMGA1-205ENST00000447654 LAMB1P07942 1786 aa20.61■□□□□ 0.89
HMGA1-205ENST00000447654 DLEC1Q9Y238 1755 aa20.61■□□□□ 0.89
HMGA1-205ENST00000447654 ANXA13P27216 316 aa20.61■□□□□ 0.89
HMGA1-205ENST00000447654 AUHQ13825 339 aaKnown RBP20.61■□□□□ 0.89
HMGA1-205ENST00000447654 CNNM4Q6P4Q7 775 aa20.61■□□□□ 0.89
HMGA1-205ENST00000447654 UNC13DQ70J99 1090 aa20.61■□□□□ 0.89
HMGA1-205ENST00000447654 NELFCDQ8IXH7 590 aa20.61■□□□□ 0.89
HMGA1-205ENST00000447654 MAGEB18Q96M61 343 aa20.61■□□□□ 0.89
HMGA1-205ENST00000447654 MAF1Q9H063 256 aa20.61■□□□□ 0.89
HMGA1-205ENST00000447654 SLTMQ9NWH9 1034 aaKnown RBP eCLIP20.61■□□□□ 0.89
HMGA1-205ENST00000447654 TBC1D30Q9Y2I9 924 aa20.61■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms