RNA–Protein interactions for RNA: ENST00000447124.1

SDC1-205, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 591 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-205ENST00000447124 ZNF558Q96NG5 402 aa23.16■■□□□ 1.3
SDC1-205ENST00000447124 FAM105AQ9NUU6 356 aa23.16■■□□□ 1.3
SDC1-205ENST00000447124 LZTS1Q9Y250 596 aa23.16■■□□□ 1.3
SDC1-205ENST00000447124 ASAP2O43150 1006 aa23.15■■□□□ 1.3
SDC1-205ENST00000447124 SPATA31C1P0DKV0 1188 aa23.15■■□□□ 1.3
SDC1-205ENST00000447124 MCM7P33993 719 aa23.15■■□□□ 1.3
SDC1-205ENST00000447124 SAFBQ15424 915 aaKnown RBP eCLIP23.15■■□□□ 1.3
SDC1-205ENST00000447124 ZNF174Q15697 407 aa23.15■■□□□ 1.3
SDC1-205ENST00000447124 SLC39A11Q8N1S5 342 aa23.15■■□□□ 1.3
SDC1-205ENST00000447124 FBXO18Q8NFZ0 1043 aa23.15■■□□□ 1.3
SDC1-205ENST00000447124 TCP11Q8WWU5 503 aa23.15■■□□□ 1.3
SDC1-205ENST00000447124 MTRQ99707 1265 aa23.15■■□□□ 1.3
SDC1-205ENST00000447124 ANKEF1Q9NU02 776 aa23.15■■□□□ 1.3
SDC1-205ENST00000447124 AGPAT5Q9NUQ2 364 aa23.15■■□□□ 1.3
SDC1-205ENST00000447124 RAPGEFL1Q9UHV5 662 aa23.15■■□□□ 1.3
SDC1-205ENST00000447124 CD207Q9UJ71 328 aa23.15■■□□□ 1.3
SDC1-205ENST00000447124 POTEMA6NI47 508 aa23.14■■□□□ 1.29
SDC1-205ENST00000447124 C19orf67A6NJJ6 358 aa23.14■■□□□ 1.29
SDC1-205ENST00000447124 NT5C1B-RDH14C9J2C7 533 aa23.14■■□□□ 1.29
SDC1-205ENST00000447124 PI4K2BG5E9Z4 385 aa23.14■■□□□ 1.29
SDC1-205ENST00000447124 OFD1O75665 1012 aa23.14■■□□□ 1.29
SDC1-205ENST00000447124 COL9A1P20849 921 aa23.14■■□□□ 1.29
SDC1-205ENST00000447124 NDUFV1P49821 464 aa23.14■■□□□ 1.29
SDC1-205ENST00000447124 ZP2Q05996 745 aa23.14■■□□□ 1.29
SDC1-205ENST00000447124 SMAD2Q15796 467 aaKnown RBP23.14■■□□□ 1.29
SDC1-205ENST00000447124 DUSP6Q16828 381 aa23.14■■□□□ 1.29
SDC1-205ENST00000447124 UBXN11Q5T124 520 aa23.14■■□□□ 1.29
SDC1-205ENST00000447124 RNF149Q8NC42 400 aa23.14■■□□□ 1.29
SDC1-205ENST00000447124 VN1R2Q8NFZ6 395 aa23.14■■□□□ 1.29
SDC1-205ENST00000447124 PIGOQ8TEQ8 1089 aa23.14■■□□□ 1.29
SDC1-205ENST00000447124 SPG21Q9NZD8 308 aa23.14■■□□□ 1.29
SDC1-205ENST00000447124 GAS2O43903 313 aaKnown RBP23.13■■□□□ 1.29
SDC1-205ENST00000447124 EYA4O95677 639 aa23.13■■□□□ 1.29
SDC1-205ENST00000447124 SKIP12755 728 aa23.13■■□□□ 1.29
SDC1-205ENST00000447124 SSTR3P32745 418 aaPredicted RBP23.13■■□□□ 1.29
SDC1-205ENST00000447124 ARL2P36404 184 aa23.13■■□□□ 1.29
SDC1-205ENST00000447124 RBM25P49756 843 aaKnown RBP23.13■■□□□ 1.29
SDC1-205ENST00000447124 RARRES1P49788 294 aa23.13■■□□□ 1.29
SDC1-205ENST00000447124 PLPP4Q5VZY2 271 aa23.13■■□□□ 1.29
SDC1-205ENST00000447124 PDE12Q6L8Q7 609 aaKnown RBP23.13■■□□□ 1.29
SDC1-205ENST00000447124 MRPL10Q7Z7H8 261 aaKnown RBP23.13■■□□□ 1.29
SDC1-205ENST00000447124 ASAP3Q8TDY4 903 aa23.13■■□□□ 1.29
SDC1-205ENST00000447124 C1QTNF1Q9BXJ1 281 aa23.13■■□□□ 1.29
SDC1-205ENST00000447124 FOXP1Q9H334 677 aaPredicted RBP23.13■■□□□ 1.29
SDC1-205ENST00000447124 SH2B1Q9NRF2 756 aaPredicted RBP23.13■■□□□ 1.29
SDC1-205ENST00000447124 PUF60Q9UHX1 559 aaKnown RBP23.13■■□□□ 1.29
SDC1-205ENST00000447124 BARX2Q9UMQ3 279 aaPredicted RBP23.13■■□□□ 1.29
SDC1-205ENST00000447124 FAM50BQ9Y247 325 aa23.13■■□□□ 1.29
SDC1-205ENST00000447124 PCDHB2Q9Y5E7 798 aa23.13■■□□□ 1.29
SDC1-205ENST00000447124 HIDE1A8MVS5 230 aa23.12■■□□□ 1.29
SDC1-205ENST00000447124 AFF1P51825 1210 aaKnown RBP23.12■■□□□ 1.29
SDC1-205ENST00000447124 BCAR1P56945 870 aa23.12■■□□□ 1.29
SDC1-205ENST00000447124 PTENP60484 403 aa23.12■■□□□ 1.29
SDC1-205ENST00000447124 SMAD4Q13485 552 aaKnown RBP23.12■■□□□ 1.29
SDC1-205ENST00000447124 AGMOQ6ZNB7 445 aa23.12■■□□□ 1.29
SDC1-205ENST00000447124 ADHFE1Q8IWW8 467 aa23.12■■□□□ 1.29
SDC1-205ENST00000447124 NRDE2Q9H7Z3 1164 aa23.12■■□□□ 1.29
SDC1-205ENST00000447124 C11orf16Q9NQ32 467 aa23.12■■□□□ 1.29
SDC1-205ENST00000447124 PRKAG3Q9UGI9 489 aa23.12■■□□□ 1.29
SDC1-205ENST00000447124 C5orf42Q9H799 3197 aa23.11■■□□□ 1.29
SDC1-205ENST00000447124 MED24O75448 989 aa23.11■■□□□ 1.29
SDC1-205ENST00000447124 DGAT1O75907 488 aa23.11■■□□□ 1.29
SDC1-205ENST00000447124 XRCC6P12956 609 aaKnown RBP eCLIP23.11■■□□□ 1.29
SDC1-205ENST00000447124 PPM1AP35813 382 aa23.11■■□□□ 1.29
SDC1-205ENST00000447124 TECP42680 631 aa23.11■■□□□ 1.29
SDC1-205ENST00000447124 HMGN5P82970 282 aaKnown RBP23.11■■□□□ 1.29
SDC1-205ENST00000447124 KRT17Q04695 432 aa23.11■■□□□ 1.29
SDC1-205ENST00000447124 COASYQ13057 564 aa23.11■■□□□ 1.29
SDC1-205ENST00000447124 KCNC3Q14003 757 aa23.11■■□□□ 1.29
SDC1-205ENST00000447124 TMEM173Q86WV6 379 aaPredicted RBP23.11■■□□□ 1.29
SDC1-205ENST00000447124 CATSPER3Q86XQ3 398 aa23.11■■□□□ 1.29
SDC1-205ENST00000447124 C4orf32Q8N8J7 132 aa23.11■■□□□ 1.29
SDC1-205ENST00000447124 TCF25Q9BQ70 676 aa23.11■■□□□ 1.29
SDC1-205ENST00000447124 MRPL9Q9BYD2 267 aaKnown RBP23.11■■□□□ 1.29
SDC1-205ENST00000447124 TBC1D13Q9NVG8 400 aa23.11■■□□□ 1.29
SDC1-205ENST00000447124 B4GALT3O60512 393 aa23.1■■□□□ 1.29
SDC1-205ENST00000447124 GLRA2P23416 452 aa23.1■■□□□ 1.29
SDC1-205ENST00000447124 RAB27AP51159 221 aa23.1■■□□□ 1.29
SDC1-205ENST00000447124 MXD4Q14582 209 aaPredicted RBP23.1■■□□□ 1.29
SDC1-205ENST00000447124 NOMO2Q5JPE7 1267 aa23.1■■□□□ 1.29
SDC1-205ENST00000447124 ZNF280BQ86YH2 543 aa23.1■■□□□ 1.29
SDC1-205ENST00000447124 IFNLR1Q8IU57 520 aaPredicted RBP23.1■■□□□ 1.29
SDC1-205ENST00000447124 LRFN3Q9BTN0 628 aa23.1■■□□□ 1.29
SDC1-205ENST00000447124 NGRNQ9NPE2 291 aaKnown RBP23.1■■□□□ 1.29
SDC1-205ENST00000447124 INPP5FQ9Y2H2 1132 aa23.1■■□□□ 1.29
SDC1-205ENST00000447124 GALTP07902 379 aa23.09■■□□□ 1.29
SDC1-205ENST00000447124 ALDH7A1P49419 539 aaKnown RBP23.09■■□□□ 1.29
SDC1-205ENST00000447124 POU5F1BQ06416 359 aa23.09■■□□□ 1.29
SDC1-205ENST00000447124 CAPSQ13938 189 aa23.09■■□□□ 1.29
SDC1-205ENST00000447124 GLB1LQ6UWU2 654 aa23.09■■□□□ 1.29
SDC1-205ENST00000447124 TMC7Q7Z402 723 aa23.09■■□□□ 1.29
SDC1-205ENST00000447124 FAM184AQ8NB25 1140 aa23.09■■□□□ 1.29
SDC1-205ENST00000447124 SMRP1Q8NCR6 262 aa23.09■■□□□ 1.29
SDC1-205ENST00000447124 SMG8Q8ND04 991 aaKnown RBP23.09■■□□□ 1.29
SDC1-205ENST00000447124 PGBD4Q96DM1 585 aa23.09■■□□□ 1.29
SDC1-205ENST00000447124 CDCA3Q99618 268 aaPredicted RBP23.09■■□□□ 1.29
SDC1-205ENST00000447124 TUFT1Q9NNX1 390 aa23.09■■□□□ 1.29
SDC1-205ENST00000447124 ENTPD7Q9NQZ7 604 aa23.09■■□□□ 1.29
SDC1-205ENST00000447124 TSPAN1O60635 241 aa23.08■■□□□ 1.29
SDC1-205ENST00000447124 OR52Z1P0C646 297 aa23.08■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms