RNA–Protein interactions for RNA: ENST00000439518.5

NCKIPSD-206, Transcript of NCK interacting protein with SH3 domain, humanhuman

TSL 1 (best)

Gene NCKIPSD, Length 1,214 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NCKIPSD-206ENST00000439518 PBX3P40426 434 aa22.67■■□□□ 1.22
NCKIPSD-206ENST00000439518 TXKP42681 527 aa22.67■■□□□ 1.22
NCKIPSD-206ENST00000439518 GUCY1B3Q02153 619 aa22.67■■□□□ 1.22
NCKIPSD-206ENST00000439518 SMAD4Q13485 552 aaKnown RBP22.67■■□□□ 1.22
NCKIPSD-206ENST00000439518 C8orf34Q49A92 452 aa22.67■■□□□ 1.22
NCKIPSD-206ENST00000439518 SRGAP1Q7Z6B7 1085 aa22.67■■□□□ 1.22
NCKIPSD-206ENST00000439518 ADHFE1Q8IWW8 467 aa22.67■■□□□ 1.22
NCKIPSD-206ENST00000439518 TCP11Q8WWU5 503 aa22.67■■□□□ 1.22
NCKIPSD-206ENST00000439518 RSPH1Q8WYR4 309 aa22.67■■□□□ 1.22
NCKIPSD-206ENST00000439518 XPNPEP1Q9NQW7 623 aa22.67■■□□□ 1.22
NCKIPSD-206ENST00000439518 BMP2KQ9NSY1 1161 aaPredicted RBP22.67■■□□□ 1.22
NCKIPSD-206ENST00000439518 FAM105AQ9NUU6 356 aa22.67■■□□□ 1.22
NCKIPSD-206ENST00000439518 SPG21Q9NZD8 308 aa22.67■■□□□ 1.22
NCKIPSD-206ENST00000439518 PUF60Q9UHX1 559 aaKnown RBP22.67■■□□□ 1.22
NCKIPSD-206ENST00000439518 C5orf42Q9H799 3197 aa22.66■■□□□ 1.22
NCKIPSD-206ENST00000439518 SSTR3P32745 418 aaPredicted RBP22.66■■□□□ 1.22
NCKIPSD-206ENST00000439518 SAFBQ15424 915 aaKnown RBP eCLIP22.66■■□□□ 1.22
NCKIPSD-206ENST00000439518 FERMT3Q86UX7 667 aa22.66■■□□□ 1.22
NCKIPSD-206ENST00000439518 SLC39A11Q8N1S5 342 aa22.66■■□□□ 1.22
NCKIPSD-206ENST00000439518 ZSCAN31Q96LW9 406 aaPredicted RBP22.66■■□□□ 1.22
NCKIPSD-206ENST00000439518 MRPL9Q9BYD2 267 aaKnown RBP22.66■■□□□ 1.22
NCKIPSD-206ENST00000439518 TMEM60Q9H2L4 133 aa22.66■■□□□ 1.22
NCKIPSD-206ENST00000439518 ANKEF1Q9NU02 776 aa22.66■■□□□ 1.22
NCKIPSD-206ENST00000439518 PER2O15055 1255 aa22.65■■□□□ 1.22
NCKIPSD-206ENST00000439518 HOXA11P31270 313 aaPredicted RBP22.65■■□□□ 1.22
NCKIPSD-206ENST00000439518 RAB27AP51159 221 aa22.65■■□□□ 1.22
NCKIPSD-206ENST00000439518 COASYQ13057 564 aa22.65■■□□□ 1.22
NCKIPSD-206ENST00000439518 DUSP6Q16828 381 aa22.65■■□□□ 1.22
NCKIPSD-206ENST00000439518 RNF149Q8NC42 400 aa22.65■■□□□ 1.22
NCKIPSD-206ENST00000439518 LPPQ93052 612 aa22.65■■□□□ 1.22
NCKIPSD-206ENST00000439518 C8orf76Q96K31 380 aa22.65■■□□□ 1.22
NCKIPSD-206ENST00000439518 CDCA3Q99618 268 aaPredicted RBP22.65■■□□□ 1.22
NCKIPSD-206ENST00000439518 MTRQ99707 1265 aa22.65■■□□□ 1.22
NCKIPSD-206ENST00000439518 ARID2Q68CP9 1835 aa22.64■■□□□ 1.22
NCKIPSD-206ENST00000439518 MEIS3P2A8K0S8 358 aa22.64■■□□□ 1.21
NCKIPSD-206ENST00000439518 KRT17Q04695 432 aa22.64■■□□□ 1.21
NCKIPSD-206ENST00000439518 GLB1LQ6UWU2 654 aa22.64■■□□□ 1.21
NCKIPSD-206ENST00000439518 SMRP1Q8NCR6 262 aa22.64■■□□□ 1.21
NCKIPSD-206ENST00000439518 VN1R2Q8NFZ6 395 aa22.64■■□□□ 1.21
NCKIPSD-206ENST00000439518 TCF25Q9BQ70 676 aa22.64■■□□□ 1.21
NCKIPSD-206ENST00000439518 NGRNQ9NPE2 291 aaKnown RBP22.64■■□□□ 1.21
NCKIPSD-206ENST00000439518 C11orf16Q9NQ32 467 aa22.64■■□□□ 1.21
NCKIPSD-206ENST00000439518 BARX2Q9UMQ3 279 aaPredicted RBP22.64■■□□□ 1.21
NCKIPSD-206ENST00000439518 FSD2A1L4K1 749 aa22.63■■□□□ 1.21
NCKIPSD-206ENST00000439518 MCM7P33993 719 aa22.63■■□□□ 1.21
NCKIPSD-206ENST00000439518 RARRES1P49788 294 aa22.63■■□□□ 1.21
NCKIPSD-206ENST00000439518 BCAR1P56945 870 aa22.63■■□□□ 1.21
NCKIPSD-206ENST00000439518 RBM10P98175 930 aaKnown RBP22.63■■□□□ 1.21
NCKIPSD-206ENST00000439518 KCNC3Q14003 757 aa22.63■■□□□ 1.21
NCKIPSD-206ENST00000439518 MXD4Q14582 209 aaPredicted RBP22.63■■□□□ 1.21
NCKIPSD-206ENST00000439518 LONRF3Q496Y0 759 aa22.63■■□□□ 1.21
NCKIPSD-206ENST00000439518 NOMO2Q5JPE7 1267 aa22.63■■□□□ 1.21
NCKIPSD-206ENST00000439518 UBXN11Q5T124 520 aa22.63■■□□□ 1.21
NCKIPSD-206ENST00000439518 PLPP4Q5VZY2 271 aa22.63■■□□□ 1.21
NCKIPSD-206ENST00000439518 MRPL10Q7Z7H8 261 aaKnown RBP22.63■■□□□ 1.21
NCKIPSD-206ENST00000439518 FBXO18Q8NFZ0 1043 aa22.63■■□□□ 1.21
NCKIPSD-206ENST00000439518 LRFN3Q9BTN0 628 aa22.63■■□□□ 1.21
NCKIPSD-206ENST00000439518 FOXP1Q9H334 677 aaPredicted RBP22.63■■□□□ 1.21
NCKIPSD-206ENST00000439518 SH2B1Q9NRF2 756 aaPredicted RBP22.63■■□□□ 1.21
NCKIPSD-206ENST00000439518 PCDHB2Q9Y5E7 798 aa22.63■■□□□ 1.21
NCKIPSD-206ENST00000439518 POTEMA6NI47 508 aa22.62■■□□□ 1.21
NCKIPSD-206ENST00000439518 HIDE1A8MVS5 230 aa22.62■■□□□ 1.21
NCKIPSD-206ENST00000439518 GPR37L1O60883 481 aa22.62■■□□□ 1.21
NCKIPSD-206ENST00000439518 OFD1O75665 1012 aa22.62■■□□□ 1.21
NCKIPSD-206ENST00000439518 DGAT1O75907 488 aa22.62■■□□□ 1.21
NCKIPSD-206ENST00000439518 SPATA31C1P0DKV0 1188 aa22.62■■□□□ 1.21
NCKIPSD-206ENST00000439518 XRCC6P12956 609 aaKnown RBP eCLIP22.62■■□□□ 1.21
NCKIPSD-206ENST00000439518 ATP2B1P20020 1258 aa22.62■■□□□ 1.21
NCKIPSD-206ENST00000439518 ALDH7A1P49419 539 aaKnown RBP22.62■■□□□ 1.21
NCKIPSD-206ENST00000439518 HMGN5P82970 282 aaKnown RBP22.62■■□□□ 1.21
NCKIPSD-206ENST00000439518 POU5F1BQ06416 359 aa22.62■■□□□ 1.21
NCKIPSD-206ENST00000439518 TMEM31Q5JXX7 168 aa22.62■■□□□ 1.21
NCKIPSD-206ENST00000439518 IFNLR1Q8IU57 520 aaPredicted RBP22.62■■□□□ 1.21
NCKIPSD-206ENST00000439518 PGBD4Q96DM1 585 aa22.62■■□□□ 1.21
NCKIPSD-206ENST00000439518 ENTPD7Q9NQZ7 604 aa22.62■■□□□ 1.21
NCKIPSD-206ENST00000439518 TBC1D13Q9NVG8 400 aa22.62■■□□□ 1.21
NCKIPSD-206ENST00000439518 ARL2P36404 184 aa22.61■■□□□ 1.21
NCKIPSD-206ENST00000439518 RBM25P49756 843 aaKnown RBP22.61■■□□□ 1.21
NCKIPSD-206ENST00000439518 PTENP60484 403 aa22.61■■□□□ 1.21
NCKIPSD-206ENST00000439518 ORC2Q13416 577 aaPredicted RBP22.61■■□□□ 1.21
NCKIPSD-206ENST00000439518 TMEM184AQ6ZMB5 413 aa22.61■■□□□ 1.21
NCKIPSD-206ENST00000439518 AGMOQ6ZNB7 445 aa22.61■■□□□ 1.21
NCKIPSD-206ENST00000439518 TMC7Q7Z402 723 aa22.61■■□□□ 1.21
NCKIPSD-206ENST00000439518 PIGOQ8TEQ8 1089 aa22.61■■□□□ 1.21
NCKIPSD-206ENST00000439518 POP1Q99575 1024 aaKnown RBP22.61■■□□□ 1.21
NCKIPSD-206ENST00000439518 RAPGEFL1Q9UHV5 662 aa22.61■■□□□ 1.21
NCKIPSD-206ENST00000439518 NT5C1B-RDH14C9J2C7 533 aa22.6■■□□□ 1.21
NCKIPSD-206ENST00000439518 PCBP1Q15365 356 aaKnown RBP eCLIP22.6■■□□□ 1.21
NCKIPSD-206ENST00000439518 MRPL43Q8N983 215 aaKnown RBP22.6■■□□□ 1.21
NCKIPSD-206ENST00000439518 ASAP3Q8TDY4 903 aa22.6■■□□□ 1.21
NCKIPSD-206ENST00000439518 NRDE2Q9H7Z3 1164 aa22.6■■□□□ 1.21
NCKIPSD-206ENST00000439518 TUFT1Q9NNX1 390 aa22.6■■□□□ 1.21
NCKIPSD-206ENST00000439518 INPP5FQ9Y2H2 1132 aa22.6■■□□□ 1.21
NCKIPSD-206ENST00000439518 A0A087WWV3 80 aa22.59■■□□□ 1.21
NCKIPSD-206ENST00000439518 CARNS1A5YM72 827 aa22.59■■□□□ 1.21
NCKIPSD-206ENST00000439518 ZC3H11AO75152 810 aaKnown RBP eCLIP22.59■■□□□ 1.21
NCKIPSD-206ENST00000439518 GALTP07902 379 aa22.59■■□□□ 1.21
NCKIPSD-206ENST00000439518 ALADP13716 330 aa22.59■■□□□ 1.21
NCKIPSD-206ENST00000439518 CAPSQ13938 189 aa22.59■■□□□ 1.21
NCKIPSD-206ENST00000439518 TFDP1Q14186 410 aa22.59■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms