RNA–Protein interactions for RNA: ENST00000439160.6

TCOF1-205, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,644 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-205ENST00000439160 C2orf40Q9H1Z8 148 aa13.2□□□□□ -0.3
TCOF1-205ENST00000439160 TOPORSQ9NS56 1045 aaPredicted RBP13.2□□□□□ -0.3
TCOF1-205ENST00000439160 TRIM10Q9UDY6 481 aa13.2□□□□□ -0.3
TCOF1-205ENST00000439160 CYP26A1O43174 497 aa13.2□□□□□ -0.3
TCOF1-205ENST00000439160 ARP10275 920 aa13.2□□□□□ -0.3
TCOF1-205ENST00000439160 SOX5P35711 763 aa13.2□□□□□ -0.3
TCOF1-205ENST00000439160 IFNAR2P48551 515 aa13.2□□□□□ -0.3
TCOF1-205ENST00000439160 GABPAQ06546 454 aa13.2□□□□□ -0.3
TCOF1-205ENST00000439160 EDRF1Q3B7T1 1238 aa13.2□□□□□ -0.3
TCOF1-205ENST00000439160 PPP1R2P3Q6NXS1 205 aa13.2□□□□□ -0.3
TCOF1-205ENST00000439160 RNF10Q8N5U6 811 aaKnown RBP13.2□□□□□ -0.3
TCOF1-205ENST00000439160 OSBPL9Q96SU4 736 aa13.2□□□□□ -0.3
TCOF1-205ENST00000439160 ESYT3A0FGR9 886 aa13.2□□□□□ -0.3
TCOF1-205ENST00000439160 PRPSAP2O60256 369 aa13.2□□□□□ -0.3
TCOF1-205ENST00000439160 RNF40O75150 1001 aa13.2□□□□□ -0.3
TCOF1-205ENST00000439160 RHBDL3P58872 404 aa13.2□□□□□ -0.3
TCOF1-205ENST00000439160 RBM43Q6ZSC3 357 aaKnown RBP13.2□□□□□ -0.3
TCOF1-205ENST00000439160 NFIBO00712 420 aa13.19□□□□□ -0.3
TCOF1-205ENST00000439160 PLS3P13797 630 aa13.19□□□□□ -0.3
TCOF1-205ENST00000439160 PSMA2P25787 234 aa13.19□□□□□ -0.3
TCOF1-205ENST00000439160 BASP1P80723 227 aaKnown RBP13.19□□□□□ -0.3
TCOF1-205ENST00000439160 ITKQ08881 620 aa13.19□□□□□ -0.3
TCOF1-205ENST00000439160 DSTYKQ6XUX3 929 aa13.19□□□□□ -0.3
TCOF1-205ENST00000439160 RUNDC3BQ96NL0 473 aa13.19□□□□□ -0.3
TCOF1-205ENST00000439160 SDAD1Q9NVU7 687 aaKnown RBP eCLIP13.19□□□□□ -0.3
TCOF1-205ENST00000439160 KBTBD4Q9NVX7 518 aa13.19□□□□□ -0.3
TCOF1-205ENST00000439160 ANAPC5Q9UJX4 755 aa13.19□□□□□ -0.3
TCOF1-205ENST00000439160 INPP5FQ9Y2H2 1132 aa13.19□□□□□ -0.3
TCOF1-205ENST00000439160 PITPNM2Q9BZ72 1349 aa13.19□□□□□ -0.3
TCOF1-205ENST00000439160 PPFIA4O75335 1185 aa13.19□□□□□ -0.3
TCOF1-205ENST00000439160 ZRANB2O95218 330 aaKnown RBP eCLIP13.19□□□□□ -0.3
TCOF1-205ENST00000439160 GBP1P32455 592 aa13.19□□□□□ -0.3
TCOF1-205ENST00000439160 FMO5P49326 533 aa13.19□□□□□ -0.3
TCOF1-205ENST00000439160 METTL23Q86XA0 190 aa13.19□□□□□ -0.3
TCOF1-205ENST00000439160 SIX6OS1Q8N1H7 587 aa13.19□□□□□ -0.3
TCOF1-205ENST00000439160 CERS5Q8N5B7 392 aa13.19□□□□□ -0.3
TCOF1-205ENST00000439160 KIFC3Q9BVG8 833 aa13.19□□□□□ -0.3
TCOF1-205ENST00000439160 RUSC1Q9BVN2 902 aa13.19□□□□□ -0.3
TCOF1-205ENST00000439160 MOV10L1Q9BXT6 1211 aaKnown RBP13.19□□□□□ -0.3
TCOF1-205ENST00000439160 SCINQ9Y6U3 715 aa13.19□□□□□ -0.3
TCOF1-205ENST00000439160 WNT10BO00744 389 aa13.19□□□□□ -0.3
TCOF1-205ENST00000439160 MCF2LO15068 1137 aa13.19□□□□□ -0.3
TCOF1-205ENST00000439160 CSPG5O95196 566 aa13.19□□□□□ -0.3
TCOF1-205ENST00000439160 PNMA6AP0CW24 399 aaPredicted RBP13.19□□□□□ -0.3
TCOF1-205ENST00000439160 GNA15P30679 374 aa13.19□□□□□ -0.3
TCOF1-205ENST00000439160 CIITAP33076 1130 aa13.19□□□□□ -0.3
TCOF1-205ENST00000439160 GYS2P54840 703 aa13.19□□□□□ -0.3
TCOF1-205ENST00000439160 GSPT2Q8IYD1 628 aaKnown RBP13.19□□□□□ -0.3
TCOF1-205ENST00000439160 CYP2W1Q8TAV3 490 aa13.19□□□□□ -0.3
TCOF1-205ENST00000439160 TBC1D31Q96DN5 1066 aa13.19□□□□□ -0.3
TCOF1-205ENST00000439160 FMO2Q99518 471 aa13.19□□□□□ -0.3
TCOF1-205ENST00000439160 DDX47Q9H0S4 455 aaKnown RBP13.19□□□□□ -0.3
TCOF1-205ENST00000439160 SNX24Q9Y343 169 aa13.19□□□□□ -0.3
TCOF1-205ENST00000439160 PCDHAC2Q9Y5I4 1007 aa13.19□□□□□ -0.3
TCOF1-205ENST00000439160 FHOD1Q9Y613 1164 aa13.19□□□□□ -0.3
TCOF1-205ENST00000439160 ATP8B1O43520 1251 aa13.19□□□□□ -0.3
TCOF1-205ENST00000439160 SREBF1P36956 1147 aa13.19□□□□□ -0.3
TCOF1-205ENST00000439160 BACE1P56817 501 aa13.19□□□□□ -0.3
TCOF1-205ENST00000439160 TGFB2P61812 414 aa13.19□□□□□ -0.3
TCOF1-205ENST00000439160 SNRNP35Q16560 246 aaKnown RBP13.19□□□□□ -0.3
TCOF1-205ENST00000439160 PPP6R3Q5H9R7 873 aaPredicted RBP13.19□□□□□ -0.3
TCOF1-205ENST00000439160 ELOA2Q8IYF1 753 aaPredicted RBP13.19□□□□□ -0.3
TCOF1-205ENST00000439160 ANKRD13AQ8IZ07 590 aa13.19□□□□□ -0.3
TCOF1-205ENST00000439160 SYT2Q8N9I0 419 aaPredicted RBP13.19□□□□□ -0.3
TCOF1-205ENST00000439160 ZNF564Q8TBZ8 553 aaPredicted RBP13.19□□□□□ -0.3
TCOF1-205ENST00000439160 NUP85Q9BW27 656 aa13.19□□□□□ -0.3
TCOF1-205ENST00000439160 UNC45AQ9H3U1 944 aa13.19□□□□□ -0.3
TCOF1-205ENST00000439160 MON2Q7Z3U7 1717 aa13.18□□□□□ -0.3
TCOF1-205ENST00000439160 AP5Z1O43299 807 aa13.18□□□□□ -0.3
TCOF1-205ENST00000439160 COPB2P35606 906 aa13.18□□□□□ -0.3
TCOF1-205ENST00000439160 SNAPC2Q13487 334 aa13.18□□□□□ -0.3
TCOF1-205ENST00000439160 DUOXA2Q1HG44 320 aa13.18□□□□□ -0.3
TCOF1-205ENST00000439160 SUCLA2Q9P2R7 463 aaPredicted RBP13.18□□□□□ -0.3
TCOF1-205ENST00000439160 ITIH6Q6UXX5 1313 aa13.18□□□□□ -0.3
TCOF1-205ENST00000439160 TNFAIP2Q03169 654 aa13.18□□□□□ -0.3
TCOF1-205ENST00000439160 ANKRD26Q9UPS8 1709 aa13.18□□□□□ -0.3
TCOF1-205ENST00000439160 MIF4GDA9UHW6 222 aaKnown RBP13.18□□□□□ -0.3
TCOF1-205ENST00000439160 CCDC188H7C350 402 aa13.18□□□□□ -0.3
TCOF1-205ENST00000439160 TNPO2O14787 897 aaKnown RBP13.18□□□□□ -0.3
TCOF1-205ENST00000439160 DYNC1LI2O43237 492 aaPredicted RBP13.18□□□□□ -0.3
TCOF1-205ENST00000439160 PRKCBP05771 671 aa13.18□□□□□ -0.3
TCOF1-205ENST00000439160 VCAM1P19320 739 aa13.18□□□□□ -0.3
TCOF1-205ENST00000439160 ARL4AP40617 200 aa13.18□□□□□ -0.3
TCOF1-205ENST00000439160 SLC12A2P55011 1212 aa13.18□□□□□ -0.3
TCOF1-205ENST00000439160 APBA1Q02410 837 aa13.18□□□□□ -0.3
TCOF1-205ENST00000439160 TERF2Q15554 542 aa13.18□□□□□ -0.3
TCOF1-205ENST00000439160 TAF1CQ15572 869 aaPredicted RBP13.18□□□□□ -0.3
TCOF1-205ENST00000439160 DARS2Q6PI48 645 aaKnown RBP13.18□□□□□ -0.3
TCOF1-205ENST00000439160 GABPB2Q8TAK5 448 aaPredicted RBP13.18□□□□□ -0.3
TCOF1-205ENST00000439160 EFNA5P52803 228 aa13.17□□□□□ -0.3
TCOF1-205ENST00000439160 EMC2Q15006 297 aa13.17□□□□□ -0.3
TCOF1-205ENST00000439160 ARHGEF6Q15052 776 aa13.17□□□□□ -0.3
TCOF1-205ENST00000439160 TKFCQ3LXA3 575 aa13.17□□□□□ -0.3
TCOF1-205ENST00000439160 ARMCX2Q7L311 632 aa13.17□□□□□ -0.3
TCOF1-205ENST00000439160 LRRC71Q8N4P6 559 aa13.17□□□□□ -0.3
TCOF1-205ENST00000439160 HSPH1Q92598 858 aa13.17□□□□□ -0.3
TCOF1-205ENST00000439160 ATP2A3Q93084 1043 aa13.17□□□□□ -0.3
TCOF1-205ENST00000439160 RNF25Q96BH1 459 aaPredicted RBP13.17□□□□□ -0.3
TCOF1-205ENST00000439160 POLR3CQ9BUI4 534 aaPredicted RBP13.17□□□□□ -0.3
TCOF1-205ENST00000439160 ZCCHC17Q9NP64 241 aaKnown RBP13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms