RNA–Protein interactions for RNA: ENST00000435425.1

SHH-203, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 807 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-203ENST00000435425 LRRC15Q8TF66 581 aa20.65■□□□□ 0.9
SHH-203ENST00000435425 KIFAP3Q92845 792 aa20.65■□□□□ 0.9
SHH-203ENST00000435425 CHAMP1Q96JM3 812 aa20.65■□□□□ 0.9
SHH-203ENST00000435425 PANK2Q9BZ23 570 aa20.65■□□□□ 0.9
SHH-203ENST00000435425 CHST12Q9NRB3 414 aa20.65■□□□□ 0.9
SHH-203ENST00000435425 DACT1Q9NYF0 836 aa20.65■□□□□ 0.9
SHH-203ENST00000435425 FNDC1Q4ZHG4 1894 aaPredicted RBP20.64■□□□□ 0.9
SHH-203ENST00000435425 ADGRA3Q8IWK6 1321 aa20.64■□□□□ 0.89
SHH-203ENST00000435425 NPHP3-ACAD11A0A0J9YXS1 232 aa20.64■□□□□ 0.89
SHH-203ENST00000435425 SFI1A8K8P3 1242 aa20.64■□□□□ 0.89
SHH-203ENST00000435425 PPP6R2O75170 966 aa20.64■□□□□ 0.89
SHH-203ENST00000435425 FGFR1P11362 822 aa20.64■□□□□ 0.89
SHH-203ENST00000435425 FAM189BP81408 668 aa20.64■□□□□ 0.89
SHH-203ENST00000435425 CACNB1Q02641 598 aaPredicted RBP20.64■□□□□ 0.89
SHH-203ENST00000435425 MBTD1Q05BQ5 628 aa20.64■□□□□ 0.89
SHH-203ENST00000435425 BTG3Q14201 252 aaPredicted RBP20.64■□□□□ 0.89
SHH-203ENST00000435425 LONRF3Q496Y0 759 aa20.64■□□□□ 0.89
SHH-203ENST00000435425 ECHDC2Q86YB7 292 aa20.64■□□□□ 0.89
SHH-203ENST00000435425 CRIPAKQ8N1N5 446 aa20.64■□□□□ 0.89
SHH-203ENST00000435425 FIBCD1Q8N539 461 aa20.64■□□□□ 0.89
SHH-203ENST00000435425 SP7Q8TDD2 431 aaPredicted RBP20.64■□□□□ 0.89
SHH-203ENST00000435425 RAD54LQ92698 747 aa20.64■□□□□ 0.89
SHH-203ENST00000435425 CPB2Q96IY4 423 aa20.64■□□□□ 0.89
SHH-203ENST00000435425 BLOC1S4Q9NUP1 217 aa20.64■□□□□ 0.89
SHH-203ENST00000435425 AGPAT5Q9NUQ2 364 aa20.64■□□□□ 0.89
SHH-203ENST00000435425 RNF216Q9NWF9 866 aaPredicted RBP20.64■□□□□ 0.89
SHH-203ENST00000435425 TMEM161AQ9NX61 479 aa20.64■□□□□ 0.89
SHH-203ENST00000435425 CFAP45Q9UL16 551 aa20.64■□□□□ 0.89
SHH-203ENST00000435425 MORC2Q9Y6X9 1032 aaPredicted RBP20.64■□□□□ 0.89
SHH-203ENST00000435425 CCDC169A6NNP5 214 aa20.63■□□□□ 0.89
SHH-203ENST00000435425 TSPAN1O60635 241 aa20.63■□□□□ 0.89
SHH-203ENST00000435425 NAMPTP43490 491 aa20.63■□□□□ 0.89
SHH-203ENST00000435425 PEX3P56589 373 aa20.63■□□□□ 0.89
SHH-203ENST00000435425 NCBP1Q09161 790 aaKnown RBP20.63■□□□□ 0.89
SHH-203ENST00000435425 PPP2R5AQ15172 486 aa20.63■□□□□ 0.89
SHH-203ENST00000435425 RRAGBQ5VZM2 374 aa20.63■□□□□ 0.89
SHH-203ENST00000435425 GPBP1Q86WP2 473 aa20.63■□□□□ 0.89
SHH-203ENST00000435425 IFNLR1Q8IU57 520 aaPredicted RBP20.63■□□□□ 0.89
SHH-203ENST00000435425 ZNF689Q96CS4 500 aaPredicted RBP20.63■□□□□ 0.89
SHH-203ENST00000435425 TGS1Q96RS0 853 aaKnown RBP20.63■□□□□ 0.89
SHH-203ENST00000435425 C17orf80Q9BSJ5 609 aa20.63■□□□□ 0.89
SHH-203ENST00000435425 KIFC3Q9BVG8 833 aa20.63■□□□□ 0.89
SHH-203ENST00000435425 MYO9BQ13459 2157 aa20.63■□□□□ 0.89
SHH-203ENST00000435425 TCHHQ07283 1943 aa20.63■□□□□ 0.89
SHH-203ENST00000435425 A0A0U1RQF3 1178 aa20.62■□□□□ 0.89
SHH-203ENST00000435425 EPOPA6NHQ4 379 aa20.62■□□□□ 0.89
SHH-203ENST00000435425 TBKBP1A7MCY6 615 aa20.62■□□□□ 0.89
SHH-203ENST00000435425 CUTAO60888 179 aa20.62■□□□□ 0.89
SHH-203ENST00000435425 ME1P48163 572 aa20.62■□□□□ 0.89
SHH-203ENST00000435425 TMEM132AQ24JP5 1023 aa20.62■□□□□ 0.89
SHH-203ENST00000435425 ATL3Q6DD88 541 aa20.62■□□□□ 0.89
SHH-203ENST00000435425 DAW1Q8N136 415 aa20.62■□□□□ 0.89
SHH-203ENST00000435425 DRC1Q96MC2 740 aa20.62■□□□□ 0.89
SHH-203ENST00000435425 GAS2L1Q99501 681 aaPredicted RBP20.62■□□□□ 0.89
SHH-203ENST00000435425 NFKBIZQ9BYH8 718 aa20.62■□□□□ 0.89
SHH-203ENST00000435425 C2orf40Q9H1Z8 148 aa20.62■□□□□ 0.89
SHH-203ENST00000435425 ELAC1Q9H777 363 aaKnown RBP20.62■□□□□ 0.89
SHH-203ENST00000435425 FAM105AQ9NUU6 356 aa20.62■□□□□ 0.89
SHH-203ENST00000435425 KIAA1671Q9BY89 1806 aa20.62■□□□□ 0.89
SHH-203ENST00000435425 SZT2Q5T011 3432 aa20.62■□□□□ 0.89
SHH-203ENST00000435425 COL4A6Q14031 1691 aa20.61■□□□□ 0.89
SHH-203ENST00000435425 B4GALT5O43286 388 aa20.61■□□□□ 0.89
SHH-203ENST00000435425 KRT18P05783 430 aaKnown RBP20.61■□□□□ 0.89
SHH-203ENST00000435425 FOSL2P15408 326 aa20.61■□□□□ 0.89
SHH-203ENST00000435425 IGFBP4P22692 258 aa20.61■□□□□ 0.89
SHH-203ENST00000435425 GUCY2CP25092 1073 aa20.61■□□□□ 0.89
SHH-203ENST00000435425 HOXA11P31270 313 aaPredicted RBP20.61■□□□□ 0.89
SHH-203ENST00000435425 DDIT3P35638 169 aa20.61■□□□□ 0.89
SHH-203ENST00000435425 ERVK-21P61565 698 aa20.61■□□□□ 0.89
SHH-203ENST00000435425 MAPK7Q13164 816 aa20.61■□□□□ 0.89
SHH-203ENST00000435425 ARSHQ5FYA8 562 aa20.61■□□□□ 0.89
SHH-203ENST00000435425 CDR2LQ86X02 465 aaPredicted RBP20.61■□□□□ 0.89
SHH-203ENST00000435425 PDILTQ8N807 584 aa20.61■□□□□ 0.89
SHH-203ENST00000435425 KCNG4Q8TDN1 519 aa20.61■□□□□ 0.89
SHH-203ENST00000435425 LARP4BQ92615 738 aaKnown RBP20.61■□□□□ 0.89
SHH-203ENST00000435425 LPPQ93052 612 aa20.61■□□□□ 0.89
SHH-203ENST00000435425 TIPINQ9BVW5 301 aa20.61■□□□□ 0.89
SHH-203ENST00000435425 RC3H2Q9HBD1 1191 aaKnown RBP20.61■□□□□ 0.89
SHH-203ENST00000435425 RALGAPA2Q2PPJ7 1873 aa20.6■□□□□ 0.89
SHH-203ENST00000435425 ARF4P18085 180 aaPredicted RBP20.6■□□□□ 0.89
SHH-203ENST00000435425 AXLP30530 894 aa20.6■□□□□ 0.89
SHH-203ENST00000435425 DMP1Q13316 513 aaPredicted RBP20.6■□□□□ 0.89
SHH-203ENST00000435425 AMHR2Q16671 573 aa20.6■□□□□ 0.89
SHH-203ENST00000435425 SPOUT1Q5T280 376 aaKnown RBP20.6■□□□□ 0.89
SHH-203ENST00000435425 CDCA2Q69YH5 1023 aaPredicted RBP20.6■□□□□ 0.89
SHH-203ENST00000435425 NOTUMQ6P988 496 aa20.6■□□□□ 0.89
SHH-203ENST00000435425 CMTR2Q8IYT2 770 aaKnown RBP20.6■□□□□ 0.89
SHH-203ENST00000435425 KMT5AQ9NQR1 393 aa20.6■□□□□ 0.89
SHH-203ENST00000435425 PRMT7Q9NVM4 692 aaPredicted RBP20.6■□□□□ 0.89
SHH-203ENST00000435425 PCDHA7Q9UN72 937 aa20.6■□□□□ 0.89
SHH-203ENST00000435425 USP20Q9Y2K6 914 aa20.6■□□□□ 0.89
SHH-203ENST00000435425 PCDHB2Q9Y5E7 798 aa20.6■□□□□ 0.89
SHH-203ENST00000435425 MRPL42Q9Y6G3 142 aaKnown RBP20.6■□□□□ 0.89
SHH-203ENST00000435425 COL4A4P53420 1690 aaPredicted RBP20.6■□□□□ 0.89
SHH-203ENST00000435425 A0A087X0B3 334 aa20.59■□□□□ 0.89
SHH-203ENST00000435425 EOMESO95936 686 aa20.59■□□□□ 0.89
SHH-203ENST00000435425 PRKCBP05771 671 aa20.59■□□□□ 0.89
SHH-203ENST00000435425 SKIP12755 728 aa20.59■□□□□ 0.89
SHH-203ENST00000435425 ATF7P17544 494 aaPredicted RBP20.59■□□□□ 0.89
SHH-203ENST00000435425 CTNNB1P35222 781 aa20.59■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms