RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 PHF20Q9BVI0 1012 aa16.25■□□□□ 0.19
SDC1-204ENST00000429035 CYP26B1Q9NR63 512 aa16.25■□□□□ 0.19
SDC1-204ENST00000429035 CHST12Q9NRB3 414 aa16.25■□□□□ 0.19
SDC1-204ENST00000429035 VAV3Q9UKW4 847 aa16.25■□□□□ 0.19
SDC1-204ENST00000429035 COL4A3BPQ9Y5P4 624 aa16.25■□□□□ 0.19
SDC1-204ENST00000429035 STK36Q9NRP7 1315 aa16.24■□□□□ 0.19
SDC1-204ENST00000429035 TDRD15B5MCY1 1934 aaKnown RBP16.24■□□□□ 0.19
SDC1-204ENST00000429035 IGKV6-21A0A0C4DH24 114 aa16.24■□□□□ 0.19
SDC1-204ENST00000429035 C2orf71A6NGG8 1288 aa16.24■□□□□ 0.19
SDC1-204ENST00000429035 MEIS3P2A8K0S8 358 aa16.24■□□□□ 0.19
SDC1-204ENST00000429035 NEFLP07196 543 aa16.24■□□□□ 0.19
SDC1-204ENST00000429035 GCFC2P16383 781 aaKnown RBP16.24■□□□□ 0.19
SDC1-204ENST00000429035 RAB27AP51159 221 aa16.24■□□□□ 0.19
SDC1-204ENST00000429035 CYP4A11Q02928 519 aa16.24■□□□□ 0.19
SDC1-204ENST00000429035 PPP2R5CQ13362 524 aa16.24■□□□□ 0.19
SDC1-204ENST00000429035 NOMO2Q5JPE7 1267 aa16.24■□□□□ 0.19
SDC1-204ENST00000429035 RARS2Q5T160 578 aaKnown RBP16.24■□□□□ 0.19
SDC1-204ENST00000429035 CES5AQ6NT32 575 aa16.24■□□□□ 0.19
SDC1-204ENST00000429035 TMEM173Q86WV6 379 aaPredicted RBP16.24■□□□□ 0.19
SDC1-204ENST00000429035 POTEDQ86YR6 584 aa16.24■□□□□ 0.19
SDC1-204ENST00000429035 URGCPQ8TCY9 931 aa16.24■□□□□ 0.19
SDC1-204ENST00000429035 OXER1Q8TDS5 423 aa16.24■□□□□ 0.19
SDC1-204ENST00000429035 PSPC1Q8WXF1 523 aaKnown RBP16.24■□□□□ 0.19
SDC1-204ENST00000429035 TMEM143Q96AN5 459 aa16.24■□□□□ 0.19
SDC1-204ENST00000429035 LXNQ9BS40 222 aa16.24■□□□□ 0.19
SDC1-204ENST00000429035 S1PR5Q9H228 398 aa16.24■□□□□ 0.19
SDC1-204ENST00000429035 TBC1D13Q9NVG8 400 aa16.24■□□□□ 0.19
SDC1-204ENST00000429035 CLASP2O75122 1294 aaKnown RBP16.23■□□□□ 0.19
SDC1-204ENST00000429035 CXCL14O95715 111 aa16.23■□□□□ 0.19
SDC1-204ENST00000429035 P4HBP07237 508 aaKnown RBP16.23■□□□□ 0.19
SDC1-204ENST00000429035 WEE2P0C1S8 567 aa16.23■□□□□ 0.19
SDC1-204ENST00000429035 SRGAP2CP0DJJ0 459 aa16.23■□□□□ 0.19
SDC1-204ENST00000429035 KCNC3Q14003 757 aa16.23■□□□□ 0.19
SDC1-204ENST00000429035 TMEM184AQ6ZMB5 413 aa16.23■□□□□ 0.19
SDC1-204ENST00000429035 FAM177A1Q8N128 213 aaPredicted RBP16.23■□□□□ 0.19
SDC1-204ENST00000429035 MRPL43Q8N983 215 aaKnown RBP16.23■□□□□ 0.19
SDC1-204ENST00000429035 DYDC2Q96IM9 177 aa16.23■□□□□ 0.19
SDC1-204ENST00000429035 FAM20AQ96MK3 541 aa16.23■□□□□ 0.19
SDC1-204ENST00000429035 ZBP1Q9H171 429 aa16.23■□□□□ 0.19
SDC1-204ENST00000429035 NRDE2Q9H7Z3 1164 aa16.23■□□□□ 0.19
SDC1-204ENST00000429035 KCNMB3Q9NPA1 279 aa16.23■□□□□ 0.19
SDC1-204ENST00000429035 AGPAT5Q9NUQ2 364 aa16.23■□□□□ 0.19
SDC1-204ENST00000429035 WRAP73Q9P2S5 460 aaPredicted RBP16.23■□□□□ 0.19
SDC1-204ENST00000429035 ORC3Q9UBD5 711 aaPredicted RBP16.23■□□□□ 0.19
SDC1-204ENST00000429035 TPCN1Q9ULQ1 816 aa16.23■□□□□ 0.19
SDC1-204ENST00000429035 MYO10Q9HD67 2058 aa16.22■□□□□ 0.19
SDC1-204ENST00000429035 FAM205CA6NFA0 338 aa16.22■□□□□ 0.19
SDC1-204ENST00000429035 SSBP05455 408 aaKnown RBP eCLIP16.22■□□□□ 0.19
SDC1-204ENST00000429035 HOXB8P17481 243 aaPredicted RBP16.22■□□□□ 0.19
SDC1-204ENST00000429035 MRE11P49959 708 aa16.22■□□□□ 0.19
SDC1-204ENST00000429035 SIGLEC14Q08ET2 396 aa16.22■□□□□ 0.19
SDC1-204ENST00000429035 CTTNQ14247 550 aaKnown RBP16.22■□□□□ 0.19
SDC1-204ENST00000429035 EMC2Q15006 297 aa16.22■□□□□ 0.19
SDC1-204ENST00000429035 PTPN21Q16825 1174 aa16.22■□□□□ 0.19
SDC1-204ENST00000429035 XKR9Q5GH70 373 aa16.22■□□□□ 0.19
SDC1-204ENST00000429035 ZNF579Q8NAF0 562 aaKnown RBP16.22■□□□□ 0.19
SDC1-204ENST00000429035 PGBD4Q96DM1 585 aa16.22■□□□□ 0.19
SDC1-204ENST00000429035 CCDC43Q96MW1 224 aaKnown RBP16.22■□□□□ 0.19
SDC1-204ENST00000429035 FAM193BQ96PV7 902 aaPredicted RBP16.22■□□□□ 0.19
SDC1-204ENST00000429035 NAP1L4Q99733 375 aaKnown RBP16.22■□□□□ 0.19
SDC1-204ENST00000429035 KCNH6Q9H252 994 aa16.22■□□□□ 0.19
SDC1-204ENST00000429035 POMKQ9H5K3 350 aa16.22■□□□□ 0.19
SDC1-204ENST00000429035 BRMS1Q9HCU9 246 aa16.22■□□□□ 0.19
SDC1-204ENST00000429035 RGL1Q9NZL6 768 aa16.22■□□□□ 0.19
SDC1-204ENST00000429035 DNAJB4Q9UDY4 337 aa16.22■□□□□ 0.19
SDC1-204ENST00000429035 NR2E1Q9Y466 385 aa16.22■□□□□ 0.19
SDC1-204ENST00000429035 PCDHB2Q9Y5E7 798 aa16.22■□□□□ 0.19
SDC1-204ENST00000429035 ZDBF2Q9HCK1 2354 aa16.22■□□□□ 0.19
SDC1-204ENST00000429035 DENND4AQ7Z401 1863 aa16.21■□□□□ 0.19
SDC1-204ENST00000429035 C2orf16Q68DN1 1984 aa16.21■□□□□ 0.19
SDC1-204ENST00000429035 OFD1O75665 1012 aa16.21■□□□□ 0.19
SDC1-204ENST00000429035 ERLIN2O94905 339 aa16.21■□□□□ 0.19
SDC1-204ENST00000429035 EPCAMP16422 314 aa16.21■□□□□ 0.19
SDC1-204ENST00000429035 YWHABP31946 246 aaKnown RBP16.21■□□□□ 0.19
SDC1-204ENST00000429035 KRT2P35908 639 aa16.21■□□□□ 0.19
SDC1-204ENST00000429035 RFC5P40937 340 aa16.21■□□□□ 0.19
SDC1-204ENST00000429035 SLC11A1P49279 550 aa16.21■□□□□ 0.19
SDC1-204ENST00000429035 PPP4R3AQ6IN85 833 aa16.21■□□□□ 0.19
SDC1-204ENST00000429035 C12orf76Q8N812 135 aaPredicted RBP16.21■□□□□ 0.19
SDC1-204ENST00000429035 RNF149Q8NC42 400 aa16.21■□□□□ 0.19
SDC1-204ENST00000429035 BCL7CQ8WUZ0 217 aaPredicted RBP16.21■□□□□ 0.19
SDC1-204ENST00000429035 IGSF21Q96ID5 467 aa16.21■□□□□ 0.19
SDC1-204ENST00000429035 MTRQ99707 1265 aa16.21■□□□□ 0.19
SDC1-204ENST00000429035 RSAD1Q9HA92 442 aa16.21■□□□□ 0.19
SDC1-204ENST00000429035 IFT122Q9HBG6 1241 aa16.21■□□□□ 0.19
SDC1-204ENST00000429035 C2CD4DB7Z1M9 353 aa16.2■□□□□ 0.18
SDC1-204ENST00000429035 PFKFB2O60825 505 aa16.2■□□□□ 0.18
SDC1-204ENST00000429035 BAG4O95429 457 aaKnown RBP16.2■□□□□ 0.18
SDC1-204ENST00000429035 GALTP07902 379 aa16.2■□□□□ 0.18
SDC1-204ENST00000429035 CTSAP10619 480 aa16.2■□□□□ 0.18
SDC1-204ENST00000429035 AK2P54819 239 aa16.2■□□□□ 0.18
SDC1-204ENST00000429035 LAMTOR4Q0VGL1 99 aa16.2■□□□□ 0.18
SDC1-204ENST00000429035 NR5A1Q13285 461 aa16.2■□□□□ 0.18
SDC1-204ENST00000429035 EPHA7Q15375 998 aa16.2■□□□□ 0.18
SDC1-204ENST00000429035 EARS2Q5JPH6 523 aaKnown RBP16.2■□□□□ 0.18
SDC1-204ENST00000429035 OTUD6AQ7L8S5 288 aa16.2■□□□□ 0.18
SDC1-204ENST00000429035 SRGAP1Q7Z6B7 1085 aa16.2■□□□□ 0.18
SDC1-204ENST00000429035 TPH2Q8IWU9 490 aa16.2■□□□□ 0.18
SDC1-204ENST00000429035 EXOC8Q8IYI6 725 aa16.2■□□□□ 0.18
SDC1-204ENST00000429035 NECAB1Q8N987 351 aa16.2■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 68.8 ms