RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 TUBBP07437 444 aa9.09□□□□□ -0.95
CD44-208ENST00000428726 ADRB2P07550 413 aa9.09□□□□□ -0.95
CD44-208ENST00000428726 ADCY1Q08828 1119 aa9.09□□□□□ -0.95
CD44-208ENST00000428726 TRIP13Q15645 432 aaPredicted RBP9.09□□□□□ -0.95
CD44-208ENST00000428726 EAPPQ56P03 285 aaPredicted RBP9.09□□□□□ -0.95
CD44-208ENST00000428726 UBAP2Q5T6F2 1119 aaKnown RBP9.09□□□□□ -0.95
CD44-208ENST00000428726 C8orf74Q6P047 294 aa9.09□□□□□ -0.95
CD44-208ENST00000428726 PAXIP1Q6ZW49 1069 aaPredicted RBP9.09□□□□□ -0.95
CD44-208ENST00000428726 HDXQ7Z353 690 aa9.09□□□□□ -0.95
CD44-208ENST00000428726 PRUNE1Q86TP1 453 aa9.09□□□□□ -0.95
CD44-208ENST00000428726 MSANTD4Q8NCY6 345 aa9.09□□□□□ -0.95
CD44-208ENST00000428726 LNX1Q8TBB1 728 aaPredicted RBP9.09□□□□□ -0.95
CD44-208ENST00000428726 GLG1Q92896 1179 aa9.09□□□□□ -0.95
CD44-208ENST00000428726 ACSF2Q96CM8 615 aaPredicted RBP9.09□□□□□ -0.95
CD44-208ENST00000428726 TSGA10Q9BZW7 698 aa9.09□□□□□ -0.95
CD44-208ENST00000428726 RANBP17Q9H2T7 1088 aaKnown RBP9.09□□□□□ -0.95
CD44-208ENST00000428726 SYNPO2Q9UMS6 1093 aa9.09□□□□□ -0.95
CD44-208ENST00000428726 PITPNM2Q9BZ72 1349 aa9.09□□□□□ -0.95
CD44-208ENST00000428726 LRRIQ4A6NIV6 560 aa9.09□□□□□ -0.95
CD44-208ENST00000428726 PIK3R2O00459 728 aa9.09□□□□□ -0.95
CD44-208ENST00000428726 ZEB2O60315 1214 aa9.09□□□□□ -0.95
CD44-208ENST00000428726 RNF40O75150 1001 aa9.09□□□□□ -0.95
CD44-208ENST00000428726 GNA14O95837 355 aa9.09□□□□□ -0.95
CD44-208ENST00000428726 NR3C2P08235 984 aa9.09□□□□□ -0.95
CD44-208ENST00000428726 HPDP32754 393 aaPredicted RBP9.09□□□□□ -0.95
CD44-208ENST00000428726 FLT3P36888 993 aa9.09□□□□□ -0.95
CD44-208ENST00000428726 PAFAH1B1P43034 410 aa9.09□□□□□ -0.95
CD44-208ENST00000428726 KCNJ1P48048 391 aa9.09□□□□□ -0.95
CD44-208ENST00000428726 FMO5P49326 533 aa9.09□□□□□ -0.95
CD44-208ENST00000428726 RARRES1P49788 294 aa9.09□□□□□ -0.95
CD44-208ENST00000428726 TMEM132BQ14DG7 1078 aa9.09□□□□□ -0.95
CD44-208ENST00000428726 PGM5Q15124 567 aa9.09□□□□□ -0.95
CD44-208ENST00000428726 EPHA7Q15375 998 aa9.09□□□□□ -0.95
CD44-208ENST00000428726 ANO5Q75V66 913 aa9.09□□□□□ -0.95
CD44-208ENST00000428726 SLC47A2Q86VL8 602 aa9.09□□□□□ -0.95
CD44-208ENST00000428726 ANKRD35Q8N283 1001 aa9.09□□□□□ -0.95
CD44-208ENST00000428726 TXLNBQ8N3L3 684 aa9.09□□□□□ -0.95
CD44-208ENST00000428726 LRRC71Q8N4P6 559 aa9.09□□□□□ -0.95
CD44-208ENST00000428726 POMGNT1Q8WZA1 660 aa9.09□□□□□ -0.95
CD44-208ENST00000428726 COPS5Q92905 334 aa9.09□□□□□ -0.95
CD44-208ENST00000428726 CEP63Q96MT8 703 aa9.09□□□□□ -0.95
CD44-208ENST00000428726 NACC1Q96RE7 527 aa9.09□□□□□ -0.95
CD44-208ENST00000428726 TRIM51Q9BSJ1 452 aa9.09□□□□□ -0.95
CD44-208ENST00000428726 TCHPQ9BT92 498 aa9.09□□□□□ -0.95
CD44-208ENST00000428726 ELP3Q9H9T3 547 aa9.09□□□□□ -0.95
CD44-208ENST00000428726 TYW1Q9NV66 732 aaKnown RBP9.09□□□□□ -0.95
CD44-208ENST00000428726 NAGPAQ9UK23 515 aa9.09□□□□□ -0.95
CD44-208ENST00000428726 PPP1R9AQ9ULJ8 1098 aa9.09□□□□□ -0.95
CD44-208ENST00000428726 ZNF646O15015 1829 aaPredicted RBP9.08□□□□□ -0.96
CD44-208ENST00000428726 CFHP08603 1231 aa9.08□□□□□ -0.96
CD44-208ENST00000428726 SRGAP2CP0DJJ0 459 aa9.08□□□□□ -0.96
CD44-208ENST00000428726 PSMC2P35998 433 aaKnown RBP9.08□□□□□ -0.96
CD44-208ENST00000428726 MMP14P50281 582 aa9.08□□□□□ -0.96
CD44-208ENST00000428726 MYL7Q01449 175 aa9.08□□□□□ -0.96
CD44-208ENST00000428726 MAPK7Q13164 816 aa9.08□□□□□ -0.96
CD44-208ENST00000428726 SNX1Q13596 522 aa9.08□□□□□ -0.96
CD44-208ENST00000428726 SLC18A3Q16572 532 aa9.08□□□□□ -0.96
CD44-208ENST00000428726 B4GALNT4Q76KP1 1039 aa9.08□□□□□ -0.96
CD44-208ENST00000428726 CCDC60Q8IWA6 550 aaPredicted RBP9.08□□□□□ -0.96
CD44-208ENST00000428726 TRIM58Q8NG06 486 aa9.08□□□□□ -0.96
CD44-208ENST00000428726 HNRNPLLQ8WVV9 542 aaKnown RBP9.08□□□□□ -0.96
CD44-208ENST00000428726 SEMA4DQ92854 862 aa9.08□□□□□ -0.96
CD44-208ENST00000428726 ARL8AQ96BM9 186 aa9.08□□□□□ -0.96
CD44-208ENST00000428726 FIZ1Q96SL8 496 aa9.08□□□□□ -0.96
CD44-208ENST00000428726 RAB21Q9UL25 225 aa9.08□□□□□ -0.96
CD44-208ENST00000428726 RRP15Q9Y3B9 282 aaKnown RBP9.08□□□□□ -0.96
CD44-208ENST00000428726 COL2A1P02458 1487 aaPredicted RBP9.08□□□□□ -0.96
CD44-208ENST00000428726 VWA5AO00534 786 aa9.08□□□□□ -0.96
CD44-208ENST00000428726 HNRNPDLO14979 420 aaKnown RBP9.08□□□□□ -0.96
CD44-208ENST00000428726 DHX15O43143 795 aaKnown RBP9.08□□□□□ -0.96
CD44-208ENST00000428726 ERLIN1O75477 346 aa9.08□□□□□ -0.96
CD44-208ENST00000428726 ICAM1P05362 532 aa9.08□□□□□ -0.96
CD44-208ENST00000428726 TRAF1Q13077 416 aa9.08□□□□□ -0.96
CD44-208ENST00000428726 HP1BP3Q5SSJ5 553 aaPredicted RBP9.08□□□□□ -0.96
CD44-208ENST00000428726 PAPD7Q5XG87 772 aaKnown RBP9.08□□□□□ -0.96
CD44-208ENST00000428726 BTNL9Q6UXG8 535 aa9.08□□□□□ -0.96
CD44-208ENST00000428726 PEX26Q7Z412 305 aa9.08□□□□□ -0.96
CD44-208ENST00000428726 NLRX1Q86UT6 975 aa9.08□□□□□ -0.96
CD44-208ENST00000428726 SLC5A5Q92911 643 aa9.08□□□□□ -0.96
CD44-208ENST00000428726 PDCD2LQ9BRP1 358 aa9.08□□□□□ -0.96
CD44-208ENST00000428726 INTS2Q9H0H0 1204 aaKnown RBP9.08□□□□□ -0.96
CD44-208ENST00000428726 SIX2Q9NPC8 291 aa9.08□□□□□ -0.96
CD44-208ENST00000428726 JRKLQ9Y4A0 524 aa9.08□□□□□ -0.96
CD44-208ENST00000428726 ADGRA3Q8IWK6 1321 aa9.08□□□□□ -0.96
CD44-208ENST00000428726 ANO9A1A5B4 782 aa9.07□□□□□ -0.96
CD44-208ENST00000428726 RAD51CO43502 376 aa9.07□□□□□ -0.96
CD44-208ENST00000428726 BUB1BO60566 1050 aaPredicted RBP9.07□□□□□ -0.96
CD44-208ENST00000428726 KRT13P13646 458 aa9.07□□□□□ -0.96
CD44-208ENST00000428726 TNFAIP3P21580 790 aa9.07□□□□□ -0.96
CD44-208ENST00000428726 STAT1P42224 750 aa9.07□□□□□ -0.96
CD44-208ENST00000428726 QARSP47897 775 aaKnown RBP9.07□□□□□ -0.96
CD44-208ENST00000428726 VASPP50552 380 aaPredicted RBP9.07□□□□□ -0.96
CD44-208ENST00000428726 GRM1Q13255 1194 aa9.07□□□□□ -0.96
CD44-208ENST00000428726 BIRC3Q13489 604 aa9.07□□□□□ -0.96
CD44-208ENST00000428726 LY6KQ17RY6 165 aa9.07□□□□□ -0.96
CD44-208ENST00000428726 ASTE1Q2TB18 679 aaPredicted RBP9.07□□□□□ -0.96
CD44-208ENST00000428726 TEX2Q8IWB9 1127 aa9.07□□□□□ -0.96
CD44-208ENST00000428726 TAS1R2Q8TE23 839 aa9.07□□□□□ -0.96
CD44-208ENST00000428726 KRT35Q92764 455 aa9.07□□□□□ -0.96
CD44-208ENST00000428726 AGO4Q9HCK5 861 aaKnown RBP9.07□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms