RNA–Protein interactions for RNA: ENST00000427724.6

TCOF1-204, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5

Gene TCOF1, Length 4,272 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-204ENST00000427724 GHRP10912 638 aa11.47□□□□□ -0.57
TCOF1-204ENST00000427724 ITGA4P13612 1032 aa11.47□□□□□ -0.57
TCOF1-204ENST00000427724 PEX19P40855 299 aa11.47□□□□□ -0.57
TCOF1-204ENST00000427724 PRCPP42785 496 aa11.47□□□□□ -0.57
TCOF1-204ENST00000427724 CLCN3P51790 818 aa11.47□□□□□ -0.57
TCOF1-204ENST00000427724 ACTR2P61160 394 aa11.47□□□□□ -0.57
TCOF1-204ENST00000427724 ZNF667Q5HYK9 610 aa11.47□□□□□ -0.57
TCOF1-204ENST00000427724 RAD9BQ6WBX8 426 aa11.47□□□□□ -0.57
TCOF1-204ENST00000427724 C4orf50Q6ZRC1 276 aa11.47□□□□□ -0.57
TCOF1-204ENST00000427724 TRIM58Q8NG06 486 aa11.47□□□□□ -0.57
TCOF1-204ENST00000427724 NEK9Q8TD19 979 aa11.47□□□□□ -0.57
TCOF1-204ENST00000427724 LSM14BQ9BX40 385 aaKnown RBP11.47□□□□□ -0.57
TCOF1-204ENST00000427724 MRPL4Q9BYD3 311 aaKnown RBP11.47□□□□□ -0.57
TCOF1-204ENST00000427724 TLDC2A0PJX2 215 aa11.47□□□□□ -0.57
TCOF1-204ENST00000427724 SMIM23A6NLE4 172 aa11.47□□□□□ -0.57
TCOF1-204ENST00000427724 STAT1P42224 750 aa11.47□□□□□ -0.57
TCOF1-204ENST00000427724 KCTD16Q68DU8 428 aa11.47□□□□□ -0.57
TCOF1-204ENST00000427724 SYTL5Q8TDW5 730 aaPredicted RBP11.47□□□□□ -0.57
TCOF1-204ENST00000427724 RSRC1Q96IZ7 334 aaKnown RBP11.47□□□□□ -0.57
TCOF1-204ENST00000427724 HEXIM2Q96MH2 286 aaKnown RBP11.47□□□□□ -0.57
TCOF1-204ENST00000427724 MSRAQ9UJ68 235 aa11.47□□□□□ -0.57
TCOF1-204ENST00000427724 NWD1Q149M9 1564 aa11.47□□□□□ -0.57
TCOF1-204ENST00000427724 SLC15A5A6NIM6 579 aa11.47□□□□□ -0.57
TCOF1-204ENST00000427724 PRKCBP05771 671 aa11.47□□□□□ -0.57
TCOF1-204ENST00000427724 DNAJB2P25686 324 aa11.47□□□□□ -0.57
TCOF1-204ENST00000427724 EEF1GP26641 437 aaKnown RBP11.47□□□□□ -0.57
TCOF1-204ENST00000427724 FXR1P51114 621 aaKnown RBP eCLIP11.47□□□□□ -0.57
TCOF1-204ENST00000427724 GUCY2FP51841 1108 aa11.47□□□□□ -0.57
TCOF1-204ENST00000427724 BTG3Q14201 252 aaPredicted RBP11.47□□□□□ -0.57
TCOF1-204ENST00000427724 GMCL1Q96IK5 515 aa11.47□□□□□ -0.57
TCOF1-204ENST00000427724 RPGRIP1Q96KN7 1286 aa11.47□□□□□ -0.57
TCOF1-204ENST00000427724 HDAC6Q9UBN7 1215 aa11.47□□□□□ -0.57
TCOF1-204ENST00000427724 ARHGAP25P42331 645 aa11.46□□□□□ -0.57
TCOF1-204ENST00000427724 POLR2FP61218 127 aaKnown RBP11.46□□□□□ -0.57
TCOF1-204ENST00000427724 SFMBT2Q5VUG0 894 aa11.46□□□□□ -0.57
TCOF1-204ENST00000427724 C7orf61Q8IZ16 206 aa11.46□□□□□ -0.57
TCOF1-204ENST00000427724 LMBR1Q8WVP7 490 aa11.46□□□□□ -0.57
TCOF1-204ENST00000427724 PDCD2LQ9BRP1 358 aa11.46□□□□□ -0.57
TCOF1-204ENST00000427724 TRIM31Q9BZY9 425 aa11.46□□□□□ -0.57
TCOF1-204ENST00000427724 DGAT1O75907 488 aa11.46□□□□□ -0.57
TCOF1-204ENST00000427724 HMGCRP04035 888 aa11.46□□□□□ -0.57
TCOF1-204ENST00000427724 KLRC1P26715 233 aa11.46□□□□□ -0.57
TCOF1-204ENST00000427724 CDC42EP1Q00587 391 aa11.46□□□□□ -0.57
TCOF1-204ENST00000427724 C2orf54Q08AI8 447 aa11.46□□□□□ -0.57
TCOF1-204ENST00000427724 RASGRP2Q7LDG7 609 aa11.46□□□□□ -0.57
TCOF1-204ENST00000427724 SFR1Q86XK3 245 aa11.46□□□□□ -0.57
TCOF1-204ENST00000427724 SIX6OS1Q8N1H7 587 aa11.46□□□□□ -0.57
TCOF1-204ENST00000427724 VGLL2Q8N8G2 317 aa11.46□□□□□ -0.57
TCOF1-204ENST00000427724 P2RX5Q93086 422 aa11.46□□□□□ -0.57
TCOF1-204ENST00000427724 APBA2Q99767 749 aa11.46□□□□□ -0.57
TCOF1-204ENST00000427724 IGFLR1Q9H665 355 aa11.46□□□□□ -0.57
TCOF1-204ENST00000427724 BAIAP2L1Q9UHR4 511 aa11.46□□□□□ -0.57
TCOF1-204ENST00000427724 FMN2Q9NZ56 1722 aa11.46□□□□□ -0.57
TCOF1-204ENST00000427724 CEP104O60308 925 aa11.46□□□□□ -0.58
TCOF1-204ENST00000427724 H2AFXP16104 143 aaPredicted RBP11.46□□□□□ -0.58
TCOF1-204ENST00000427724 PSMC2P35998 433 aaKnown RBP11.46□□□□□ -0.58
TCOF1-204ENST00000427724 MXI1P50539 228 aa11.46□□□□□ -0.58
TCOF1-204ENST00000427724 E2F5Q15329 346 aa11.46□□□□□ -0.58
TCOF1-204ENST00000427724 FAM110CQ1W6H9 321 aa11.46□□□□□ -0.58
TCOF1-204ENST00000427724 DDX12PQ92771 950 aa11.46□□□□□ -0.58
TCOF1-204ENST00000427724 PPANQ9NQ55 473 aaKnown RBP11.46□□□□□ -0.58
TCOF1-204ENST00000427724 ENTPD7Q9NQZ7 604 aa11.46□□□□□ -0.58
TCOF1-204ENST00000427724 HPSEQ9Y251 543 aa11.46□□□□□ -0.58
TCOF1-204ENST00000427724 A0A1B0GTH6 734 aa11.46□□□□□ -0.58
TCOF1-204ENST00000427724 TTC26A0AVF1 554 aa11.46□□□□□ -0.58
TCOF1-204ENST00000427724 N4BP1O75113 896 aaKnown RBP11.46□□□□□ -0.58
TCOF1-204ENST00000427724 CSDE1O75534 798 aaKnown RBP11.46□□□□□ -0.58
TCOF1-204ENST00000427724 GNA14O95837 355 aa11.46□□□□□ -0.58
TCOF1-204ENST00000427724 RPSAP08865 295 aaKnown RBP11.46□□□□□ -0.58
TCOF1-204ENST00000427724 ABCB4P21439 1286 aa11.46□□□□□ -0.58
TCOF1-204ENST00000427724 PTK2Q05397 1052 aa11.46□□□□□ -0.58
TCOF1-204ENST00000427724 ITKQ08881 620 aa11.46□□□□□ -0.58
TCOF1-204ENST00000427724 SURF1Q15526 300 aa11.46□□□□□ -0.58
TCOF1-204ENST00000427724 VWA3BQ502W6 1294 aa11.46□□□□□ -0.58
TCOF1-204ENST00000427724 TRIM50Q86XT4 487 aa11.46□□□□□ -0.58
TCOF1-204ENST00000427724 RPUSD2Q8IZ73 545 aaKnown RBP11.46□□□□□ -0.58
TCOF1-204ENST00000427724 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP11.46□□□□□ -0.58
TCOF1-204ENST00000427724 UBLCP1Q8WVY7 318 aaPredicted RBP11.46□□□□□ -0.58
TCOF1-204ENST00000427724 CABS1Q96KC9 395 aa11.46□□□□□ -0.58
TCOF1-204ENST00000427724 ACAP3Q96P50 834 aa11.46□□□□□ -0.58
TCOF1-204ENST00000427724 MAP3K20Q9NYL2 800 aaKnown RBP11.46□□□□□ -0.58
TCOF1-204ENST00000427724 LCMT1Q9UIC8 334 aa11.46□□□□□ -0.58
TCOF1-204ENST00000427724 GAKO14976 1311 aa11.45□□□□□ -0.58
TCOF1-204ENST00000427724 SPDYE16A6NNV3 312 aaPredicted RBP11.45□□□□□ -0.58
TCOF1-204ENST00000427724 E7EVH7 732 aa11.45□□□□□ -0.58
TCOF1-204ENST00000427724 GOLGA8SH3BPF8 625 aa11.45□□□□□ -0.58
TCOF1-204ENST00000427724 ZC3H11AO75152 810 aaKnown RBP eCLIP11.45□□□□□ -0.58
TCOF1-204ENST00000427724 LDHAP00338 332 aaKnown RBP11.45□□□□□ -0.58
TCOF1-204ENST00000427724 PRPHP41219 470 aa11.45□□□□□ -0.58
TCOF1-204ENST00000427724 NR1I3Q14994 352 aa11.45□□□□□ -0.58
TCOF1-204ENST00000427724 CFAP221Q4G0U5 840 aa11.45□□□□□ -0.58
TCOF1-204ENST00000427724 MUM1L1Q5H9M0 696 aa11.45□□□□□ -0.58
TCOF1-204ENST00000427724 RUFY4Q6ZNE9 571 aa11.45□□□□□ -0.58
TCOF1-204ENST00000427724 IFT20Q8IY31 132 aa11.45□□□□□ -0.58
TCOF1-204ENST00000427724 CHP1Q99653 195 aa11.45□□□□□ -0.58
TCOF1-204ENST00000427724 CUEDC2Q9H467 287 aa11.45□□□□□ -0.58
TCOF1-204ENST00000427724 LRRN2O75325 713 aa11.45□□□□□ -0.58
TCOF1-204ENST00000427724 HSPA1AP0DMV8 641 aaKnown RBP11.45□□□□□ -0.58
TCOF1-204ENST00000427724 HSPA1BP0DMV9 641 aaKnown RBP11.45□□□□□ -0.58
TCOF1-204ENST00000427724 ABCD1P33897 745 aa11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms