RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 ABHD8Q96I13 439 aa11.11□□□□□ -0.63
CD44-207ENST00000425428 NFKBIZQ9BYH8 718 aa11.11□□□□□ -0.63
CD44-207ENST00000425428 CELF4Q9BZC1 486 aaKnown RBP11.11□□□□□ -0.63
CD44-207ENST00000425428 TSPY26PQ9H489 355 aa11.11□□□□□ -0.63
CD44-207ENST00000425428 TMEM134Q9H6X4 195 aa11.11□□□□□ -0.63
CD44-207ENST00000425428 POLD4Q9HCU8 107 aa11.11□□□□□ -0.63
CD44-207ENST00000425428 TMEM39AQ9NV64 488 aa11.11□□□□□ -0.63
CD44-207ENST00000425428 CGNQ9P2M7 1197 aaKnown RBP11.11□□□□□ -0.63
CD44-207ENST00000425428 GRIN2DO15399 1336 aa11.1□□□□□ -0.63
CD44-207ENST00000425428 SMTNL1A8MU46 457 aa11.1□□□□□ -0.63
CD44-207ENST00000425428 GPR182O15218 404 aa11.1□□□□□ -0.63
CD44-207ENST00000425428 EN2P19622 333 aaPredicted RBP11.1□□□□□ -0.63
CD44-207ENST00000425428 RPL13P26373 211 aaKnown RBP11.1□□□□□ -0.63
CD44-207ENST00000425428 LIG4P49917 911 aa11.1□□□□□ -0.63
CD44-207ENST00000425428 GPC3P51654 580 aa11.1□□□□□ -0.63
CD44-207ENST00000425428 NCKAP1LP55160 1127 aa11.1□□□□□ -0.63
CD44-207ENST00000425428 SNRPFP62306 86 aaKnown RBP11.1□□□□□ -0.63
CD44-207ENST00000425428 TMEM62Q0P6H9 643 aa11.1□□□□□ -0.63
CD44-207ENST00000425428 CAPSQ13938 189 aa11.1□□□□□ -0.63
CD44-207ENST00000425428 KIZQ2M2Z5 673 aa11.1□□□□□ -0.63
CD44-207ENST00000425428 KLHL10Q6JEL2 608 aa11.1□□□□□ -0.63
CD44-207ENST00000425428 RUFY4Q6ZNE9 571 aa11.1□□□□□ -0.63
CD44-207ENST00000425428 FAM126BQ8IXS8 530 aa11.1□□□□□ -0.63
CD44-207ENST00000425428 DAW1Q8N136 415 aa11.1□□□□□ -0.63
CD44-207ENST00000425428 GUF1Q8N442 669 aaKnown RBP11.1□□□□□ -0.63
CD44-207ENST00000425428 ASAP3Q8TDY4 903 aa11.1□□□□□ -0.63
CD44-207ENST00000425428 PRIMPOLQ96LW4 560 aa11.1□□□□□ -0.63
CD44-207ENST00000425428 ADPGKQ9BRR6 497 aa11.1□□□□□ -0.63
CD44-207ENST00000425428 MRPL4Q9BYD3 311 aaKnown RBP11.1□□□□□ -0.63
CD44-207ENST00000425428 TRPV6Q9H1D0 765 aa11.1□□□□□ -0.63
CD44-207ENST00000425428 ST6GALNAC4Q9H4F1 302 aa11.1□□□□□ -0.63
CD44-207ENST00000425428 CENPFP49454 3210 aa11.1□□□□□ -0.63
CD44-207ENST00000425428 A0A087WZ62 844 aa11.09□□□□□ -0.63
CD44-207ENST00000425428 GOLGA6L19H0YKK7 550 aa11.09□□□□□ -0.63
CD44-207ENST00000425428 PITPNM1O00562 1244 aa11.09□□□□□ -0.63
CD44-207ENST00000425428 CLTBP09497 229 aa11.09□□□□□ -0.63
CD44-207ENST00000425428 COL6A1P12109 1028 aa11.09□□□□□ -0.63
CD44-207ENST00000425428 NMT1P30419 496 aaKnown RBP11.09□□□□□ -0.63
CD44-207ENST00000425428 PTENP60484 403 aa11.09□□□□□ -0.63
CD44-207ENST00000425428 GTF2BQ00403 316 aa11.09□□□□□ -0.63
CD44-207ENST00000425428 STK4Q13043 487 aa11.09□□□□□ -0.63
CD44-207ENST00000425428 PAK1Q13153 545 aa11.09□□□□□ -0.63
CD44-207ENST00000425428 MAPK7Q13164 816 aa11.09□□□□□ -0.63
CD44-207ENST00000425428 PRPF4BQ13523 1007 aaKnown RBP11.09□□□□□ -0.63
CD44-207ENST00000425428 TRIM60Q495X7 471 aa11.09□□□□□ -0.63
CD44-207ENST00000425428 SLFN12LQ6IEE8 588 aa11.09□□□□□ -0.63
CD44-207ENST00000425428 LRSAM1Q6UWE0 723 aa11.09□□□□□ -0.63
CD44-207ENST00000425428 CATSPER4Q7RTX7 472 aa11.09□□□□□ -0.63
CD44-207ENST00000425428 LINC01465Q8N7H1 131 aa11.09□□□□□ -0.63
CD44-207ENST00000425428 DIS3LQ8TF46 1054 aaKnown RBP11.09□□□□□ -0.63
CD44-207ENST00000425428 PPP1R16BQ96T49 567 aa11.09□□□□□ -0.63
CD44-207ENST00000425428 FDXACB1Q9BRP7 624 aaPredicted RBP11.09□□□□□ -0.63
CD44-207ENST00000425428 TCHPQ9BT92 498 aa11.09□□□□□ -0.63
CD44-207ENST00000425428 GBP3Q9H0R5 595 aa11.09□□□□□ -0.63
CD44-207ENST00000425428 TBX20Q9UMR3 447 aa11.09□□□□□ -0.63
CD44-207ENST00000425428 CDY2AQ9Y6F7 541 aa11.09□□□□□ -0.63
CD44-207ENST00000425428 HNRNPDLO14979 420 aaKnown RBP11.08□□□□□ -0.64
CD44-207ENST00000425428 RPS6KA5O75582 802 aa11.08□□□□□ -0.64
CD44-207ENST00000425428 PRKCBP05771 671 aa11.08□□□□□ -0.64
CD44-207ENST00000425428 CTSHP09668 335 aa11.08□□□□□ -0.64
CD44-207ENST00000425428 SELPP16109 830 aa11.08□□□□□ -0.64
CD44-207ENST00000425428 ZSCAN20P17040 1043 aaPredicted RBP11.08□□□□□ -0.64
CD44-207ENST00000425428 EIF4BP23588 611 aaKnown RBP11.08□□□□□ -0.64
CD44-207ENST00000425428 ERCC5P28715 1186 aaPredicted RBP11.08□□□□□ -0.64
CD44-207ENST00000425428 AXLP30530 894 aa11.08□□□□□ -0.64
CD44-207ENST00000425428 TLE2Q04725 743 aa11.08□□□□□ -0.64
CD44-207ENST00000425428 DRP2Q13474 957 aa11.08□□□□□ -0.64
CD44-207ENST00000425428 KNOP1Q1ED39 458 aaKnown RBP11.08□□□□□ -0.64
CD44-207ENST00000425428 COBLL1Q53SF7 1204 aa11.08□□□□□ -0.64
CD44-207ENST00000425428 COL13A1Q5TAT6 717 aaPredicted RBP11.08□□□□□ -0.64
CD44-207ENST00000425428 KSR1Q8IVT5 923 aa11.08□□□□□ -0.64
CD44-207ENST00000425428 NELFCDQ8IXH7 590 aa11.08□□□□□ -0.64
CD44-207ENST00000425428 TMEM161BQ8NDZ6 487 aa11.08□□□□□ -0.64
CD44-207ENST00000425428 ANKRD20A12PQ8NF67 263 aa11.08□□□□□ -0.64
CD44-207ENST00000425428 ZNF507Q8TCN5 953 aa11.08□□□□□ -0.64
CD44-207ENST00000425428 OSMRQ99650 979 aa11.08□□□□□ -0.64
CD44-207ENST00000425428 HIPK3Q9H422 1215 aa11.08□□□□□ -0.64
CD44-207ENST00000425428 PRDM5Q9NQX1 630 aaPredicted RBP11.08□□□□□ -0.64
CD44-207ENST00000425428 MAPK8IP1Q9UQF2 711 aa11.08□□□□□ -0.64
CD44-207ENST00000425428 SQORQ9Y6N5 450 aa11.08□□□□□ -0.64
CD44-207ENST00000425428 PRPF6O94906 941 aaKnown RBP11.08□□□□□ -0.64
CD44-207ENST00000425428 TPM2P07951 284 aa11.08□□□□□ -0.64
CD44-207ENST00000425428 CKBP12277 381 aa11.08□□□□□ -0.64
CD44-207ENST00000425428 PRCPP42785 496 aa11.08□□□□□ -0.64
CD44-207ENST00000425428 LRRC63Q05C16 580 aa11.08□□□□□ -0.64
CD44-207ENST00000425428 PAK2Q13177 524 aa11.08□□□□□ -0.64
CD44-207ENST00000425428 MKRN4PQ13434 485 aaPredicted RBP11.08□□□□□ -0.64
CD44-207ENST00000425428 SNX17Q15036 470 aa11.08□□□□□ -0.64
CD44-207ENST00000425428 ANO6Q4KMQ2 910 aa11.08□□□□□ -0.64
CD44-207ENST00000425428 CDCA2Q69YH5 1023 aaPredicted RBP11.08□□□□□ -0.64
CD44-207ENST00000425428 LRRC8DQ7L1W4 858 aa11.08□□□□□ -0.64
CD44-207ENST00000425428 FAM114A1Q8IWE2 563 aa11.08□□□□□ -0.64
CD44-207ENST00000425428 HACE1Q8IYU2 909 aa11.08□□□□□ -0.64
CD44-207ENST00000425428 NELFBQ8WX92 580 aa11.08□□□□□ -0.64
CD44-207ENST00000425428 BSNDQ8WZ55 320 aa11.08□□□□□ -0.64
CD44-207ENST00000425428 ZBTB10Q96DT7 871 aa11.08□□□□□ -0.64
CD44-207ENST00000425428 TRIM6Q9C030 488 aaPredicted RBP11.08□□□□□ -0.64
CD44-207ENST00000425428 TYW1Q9NV66 732 aaKnown RBP11.08□□□□□ -0.64
CD44-207ENST00000425428 ARHGAP28Q9P2N2 729 aa11.08□□□□□ -0.64
CD44-207ENST00000425428 MAGEC2Q9UBF1 373 aaPredicted RBP11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms