RNA–Protein interactions for RNA: ENST00000422797.5

LIMS1-207, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best)

Gene LIMS1, Length 1,544 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-207ENST00000422797 USP17L19D6RCP7 530 aa11.89□□□□□ -0.51
LIMS1-207ENST00000422797 USP17L20D6RJB6 530 aa11.89□□□□□ -0.51
LIMS1-207ENST00000422797 PIK3CDO00329 1044 aa11.89□□□□□ -0.51
LIMS1-207ENST00000422797 O00370 1275 aa11.89□□□□□ -0.51
LIMS1-207ENST00000422797 DNM1LO00429 736 aa11.89□□□□□ -0.51
LIMS1-207ENST00000422797 MEIS2O14770 477 aa11.89□□□□□ -0.51
LIMS1-207ENST00000422797 MAPK13O15264 365 aa11.89□□□□□ -0.51
LIMS1-207ENST00000422797 PMM2O15305 246 aa11.89□□□□□ -0.51
LIMS1-207ENST00000422797 TGFB1I1O43294 461 aa11.89□□□□□ -0.51
LIMS1-207ENST00000422797 CAND2O75155 1236 aa11.89□□□□□ -0.51
LIMS1-207ENST00000422797 MAPTP10636 758 aaKnown RBP11.89□□□□□ -0.51
LIMS1-207ENST00000422797 KRT13P13646 458 aa11.89□□□□□ -0.51
LIMS1-207ENST00000422797 CHN1P15882 459 aa11.89□□□□□ -0.51
LIMS1-207ENST00000422797 FLT3P36888 993 aa11.89□□□□□ -0.51
LIMS1-207ENST00000422797 STAT3P40763 770 aa11.89□□□□□ -0.51
LIMS1-207ENST00000422797 CAV1Q03135 178 aa11.89□□□□□ -0.51
LIMS1-207ENST00000422797 USP17L24Q0WX57 530 aa11.89□□□□□ -0.51
LIMS1-207ENST00000422797 PRPF4BQ13523 1007 aaKnown RBP11.89□□□□□ -0.51
LIMS1-207ENST00000422797 TNFAIP8L3Q5GJ75 292 aa11.89□□□□□ -0.51
LIMS1-207ENST00000422797 SLFN13Q68D06 897 aa11.89□□□□□ -0.51
LIMS1-207ENST00000422797 ZNF772Q68DY9 489 aaPredicted RBP11.89□□□□□ -0.51
LIMS1-207ENST00000422797 TTBK2Q6IQ55 1244 aa11.89□□□□□ -0.51
LIMS1-207ENST00000422797 USP17L6PQ6QN14 398 aa11.89□□□□□ -0.51
LIMS1-207ENST00000422797 FBXO11Q86XK2 927 aa11.89□□□□□ -0.51
LIMS1-207ENST00000422797 CCDC63Q8NA47 563 aa11.89□□□□□ -0.51
LIMS1-207ENST00000422797 GMCL1P1Q8NEA9 526 aa11.89□□□□□ -0.51
LIMS1-207ENST00000422797 OLIG1Q8TAK6 271 aa11.89□□□□□ -0.51
LIMS1-207ENST00000422797 TBC1D16Q8TBP0 767 aa11.89□□□□□ -0.51
LIMS1-207ENST00000422797 SLCO2A1Q92959 643 aa11.89□□□□□ -0.51
LIMS1-207ENST00000422797 LENG9Q96B70 501 aa11.89□□□□□ -0.51
LIMS1-207ENST00000422797 HOOK2Q96ED9 719 aa11.89□□□□□ -0.51
LIMS1-207ENST00000422797 GMCL1Q96IK5 515 aa11.89□□□□□ -0.51
LIMS1-207ENST00000422797 AGPAT1Q99943 283 aa11.89□□□□□ -0.51
LIMS1-207ENST00000422797 EIF2AK1Q9BQI3 630 aaKnown RBP11.89□□□□□ -0.51
LIMS1-207ENST00000422797 ZSWIM1Q9BR11 485 aa11.89□□□□□ -0.51
LIMS1-207ENST00000422797 TRIM51Q9BSJ1 452 aa11.89□□□□□ -0.51
LIMS1-207ENST00000422797 CELF4Q9BZC1 486 aaKnown RBP11.89□□□□□ -0.51
LIMS1-207ENST00000422797 BHMT2Q9H2M3 363 aa11.89□□□□□ -0.51
LIMS1-207ENST00000422797 VEZTQ9HBM0 779 aa11.89□□□□□ -0.51
LIMS1-207ENST00000422797 HAUS2Q9NVX0 235 aa11.89□□□□□ -0.51
LIMS1-207ENST00000422797 DONSONQ9NYP3 566 aa11.89□□□□□ -0.51
LIMS1-207ENST00000422797 PNMA2Q9UL42 364 aa11.89□□□□□ -0.51
LIMS1-207ENST00000422797 PPP1R9AQ9ULJ8 1098 aa11.89□□□□□ -0.51
LIMS1-207ENST00000422797 USP20Q9Y2K6 914 aa11.89□□□□□ -0.51
LIMS1-207ENST00000422797 ZMYM2Q9UBW7 1377 aa11.88□□□□□ -0.51
LIMS1-207ENST00000422797 F8W031 263 aaPredicted RBP11.88□□□□□ -0.51
LIMS1-207ENST00000422797 POTEJP0CG39 1038 aa11.88□□□□□ -0.51
LIMS1-207ENST00000422797 GZMAP12544 262 aa11.88□□□□□ -0.51
LIMS1-207ENST00000422797 HMGB2P26583 209 aaKnown RBP11.88□□□□□ -0.51
LIMS1-207ENST00000422797 PTGIRP43119 386 aa11.88□□□□□ -0.51
LIMS1-207ENST00000422797 EIF6P56537 245 aaKnown RBP11.88□□□□□ -0.51
LIMS1-207ENST00000422797 SLC8A3P57103 927 aa11.88□□□□□ -0.51
LIMS1-207ENST00000422797 GPC5P78333 572 aa11.88□□□□□ -0.51
LIMS1-207ENST00000422797 PICALMQ13492 652 aa11.88□□□□□ -0.51
LIMS1-207ENST00000422797 RINT1Q6NUQ1 792 aa11.88□□□□□ -0.51
LIMS1-207ENST00000422797 ZDHHC24Q6UX98 284 aa11.88□□□□□ -0.51
LIMS1-207ENST00000422797 KCTD1Q719H9 257 aa11.88□□□□□ -0.51
LIMS1-207ENST00000422797 INTS8Q75QN2 995 aaKnown RBP11.88□□□□□ -0.51
LIMS1-207ENST00000422797 GPATCH11Q8N954 259 aa11.88□□□□□ -0.51
LIMS1-207ENST00000422797 IFT74Q96LB3 600 aa11.88□□□□□ -0.51
LIMS1-207ENST00000422797 ANKRD27Q96NW4 1050 aa11.88□□□□□ -0.51
LIMS1-207ENST00000422797 SELENOSQ9BQE4 189 aa11.88□□□□□ -0.51
LIMS1-207ENST00000422797 EPB41L4BQ9H329 900 aa11.88□□□□□ -0.51
LIMS1-207ENST00000422797 GOLPH3Q9H4A6 298 aa11.88□□□□□ -0.51
LIMS1-207ENST00000422797 CD248Q9HCU0 757 aa11.88□□□□□ -0.51
LIMS1-207ENST00000422797 GOPCQ9HD26 462 aa11.88□□□□□ -0.51
LIMS1-207ENST00000422797 USP40Q9NVE5 1235 aa11.88□□□□□ -0.51
LIMS1-207ENST00000422797 TPX2Q9ULW0 747 aaKnown RBP11.88□□□□□ -0.51
LIMS1-207ENST00000422797 ZBTB12Q9Y330 459 aaPredicted RBP11.88□□□□□ -0.51
LIMS1-207ENST00000422797 AFF2P51816 1311 aa11.87□□□□□ -0.51
LIMS1-207ENST00000422797 PHF20L1A8MW92 1017 aa11.87□□□□□ -0.51
LIMS1-207ENST00000422797 MPHOSPH10O00566 681 aaKnown RBP11.87□□□□□ -0.51
LIMS1-207ENST00000422797 RASGRF2O14827 1237 aa11.87□□□□□ -0.51
LIMS1-207ENST00000422797 RTN2O75298 545 aa11.87□□□□□ -0.51
LIMS1-207ENST00000422797 PDE6BP35913 854 aa11.87□□□□□ -0.51
LIMS1-207ENST00000422797 SLC16A2P36021 539 aa11.87□□□□□ -0.51
LIMS1-207ENST00000422797 ZNF76P36508 570 aa11.87□□□□□ -0.51
LIMS1-207ENST00000422797 CASP4P49662 377 aa11.87□□□□□ -0.51
LIMS1-207ENST00000422797 PLTPP55058 493 aa11.87□□□□□ -0.51
LIMS1-207ENST00000422797 BFSP1Q12934 665 aa11.87□□□□□ -0.51
LIMS1-207ENST00000422797 CALCOCO2Q13137 446 aa11.87□□□□□ -0.51
LIMS1-207ENST00000422797 PPP2R5CQ13362 524 aa11.87□□□□□ -0.51
LIMS1-207ENST00000422797 CRYMQ14894 314 aa11.87□□□□□ -0.51
LIMS1-207ENST00000422797 DCAF12L1Q5VU92 463 aa11.87□□□□□ -0.51
LIMS1-207ENST00000422797 PRR5LQ6MZQ0 368 aa11.87□□□□□ -0.51
LIMS1-207ENST00000422797 C1orf186Q6ZWK4 172 aa11.87□□□□□ -0.51
LIMS1-207ENST00000422797 TRPM8Q7Z2W7 1104 aa11.87□□□□□ -0.51
LIMS1-207ENST00000422797 C12orf56Q8IXR9 622 aa11.87□□□□□ -0.51
LIMS1-207ENST00000422797 MYCT1Q8N699 235 aa11.87□□□□□ -0.51
LIMS1-207ENST00000422797 SLC17A8Q8NDX2 589 aa11.87□□□□□ -0.51
LIMS1-207ENST00000422797 GJA10Q969M2 543 aa11.87□□□□□ -0.51
LIMS1-207ENST00000422797 RSRC1Q96IZ7 334 aaKnown RBP11.87□□□□□ -0.51
LIMS1-207ENST00000422797 SERPINB12Q96P63 405 aa11.87□□□□□ -0.51
LIMS1-207ENST00000422797 NACC1Q96RE7 527 aa11.87□□□□□ -0.51
LIMS1-207ENST00000422797 RUSC1Q9BVN2 902 aa11.87□□□□□ -0.51
LIMS1-207ENST00000422797 MRIQ9BWK5 157 aa11.87□□□□□ -0.51
LIMS1-207ENST00000422797 WDR11Q9BZH6 1224 aa11.87□□□□□ -0.51
LIMS1-207ENST00000422797 OSGEPQ9NPF4 335 aa11.87□□□□□ -0.51
LIMS1-207ENST00000422797 BATF3Q9NR55 127 aa11.87□□□□□ -0.51
LIMS1-207ENST00000422797 AGPAT3Q9NRZ7 376 aa11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms