RNA–Protein interactions for RNA: ENST00000417656.6

SKA1-203, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2 BASIC

Gene SKA1, Length 1,095 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-203ENST00000417656 IFNLR1Q8IU57 520 aaPredicted RBP13.81□□□□□ -0.2
SKA1-203ENST00000417656 DRC1Q96MC2 740 aa13.81□□□□□ -0.2
SKA1-203ENST00000417656 PANK2Q9BZ23 570 aa13.81□□□□□ -0.2
SKA1-203ENST00000417656 INO80BQ9C086 356 aaPredicted RBP13.81□□□□□ -0.2
SKA1-203ENST00000417656 PIN4Q9Y237 131 aaKnown RBP13.81□□□□□ -0.2
SKA1-203ENST00000417656 RBM19Q9Y4C8 960 aaKnown RBP13.81□□□□□ -0.2
SKA1-203ENST00000417656 ADGRA3Q8IWK6 1321 aa13.81□□□□□ -0.2
SKA1-203ENST00000417656 TTC3P53804 2025 aa13.81□□□□□ -0.2
SKA1-203ENST00000417656 LAMA2P24043 3122 aaKnown RBP13.8□□□□□ -0.2
SKA1-203ENST00000417656 ERLIN2O94905 339 aa13.8□□□□□ -0.2
SKA1-203ENST00000417656 UPP2O95045 317 aa13.8□□□□□ -0.2
SKA1-203ENST00000417656 GJB5O95377 273 aa13.8□□□□□ -0.2
SKA1-203ENST00000417656 NAMPTP43490 491 aa13.8□□□□□ -0.2
SKA1-203ENST00000417656 PPP2R5AQ15172 486 aa13.8□□□□□ -0.2
SKA1-203ENST00000417656 RAB30Q15771 203 aa13.8□□□□□ -0.2
SKA1-203ENST00000417656 ARSHQ5FYA8 562 aa13.8□□□□□ -0.2
SKA1-203ENST00000417656 RESP18Q5W5W9 173 aa13.8□□□□□ -0.2
SKA1-203ENST00000417656 ZBTB8OSQ8IWT0 167 aa13.8□□□□□ -0.2
SKA1-203ENST00000417656 DEPTORQ8TB45 409 aa13.8□□□□□ -0.2
SKA1-203ENST00000417656 DHX58Q96C10 678 aa13.8□□□□□ -0.2
SKA1-203ENST00000417656 IFT74Q96LB3 600 aa13.8□□□□□ -0.2
SKA1-203ENST00000417656 REEP2Q9BRK0 252 aa13.8□□□□□ -0.2
SKA1-203ENST00000417656 TIPINQ9BVW5 301 aa13.8□□□□□ -0.2
SKA1-203ENST00000417656 NFKBIZQ9BYH8 718 aa13.8□□□□□ -0.2
SKA1-203ENST00000417656 SCAND2PQ9GZW5 306 aaPredicted RBP13.8□□□□□ -0.2
SKA1-203ENST00000417656 NKX2-4Q9H2Z4 354 aa13.8□□□□□ -0.2
SKA1-203ENST00000417656 AGPAT5Q9NUQ2 364 aa13.8□□□□□ -0.2
SKA1-203ENST00000417656 KCND2Q9NZV8 630 aa13.8□□□□□ -0.2
SKA1-203ENST00000417656 LCHNA4D1U4 455 aa13.79□□□□□ -0.2
SKA1-203ENST00000417656 SFI1A8K8P3 1242 aa13.79□□□□□ -0.2
SKA1-203ENST00000417656 B4GALT5O43286 388 aa13.79□□□□□ -0.2
SKA1-203ENST00000417656 TLL1O43897 1013 aa13.79□□□□□ -0.2
SKA1-203ENST00000417656 TSPAN1O60635 241 aa13.79□□□□□ -0.2
SKA1-203ENST00000417656 KRT18P05783 430 aaKnown RBP13.79□□□□□ -0.2
SKA1-203ENST00000417656 ZSCAN20P17040 1043 aaPredicted RBP13.79□□□□□ -0.2
SKA1-203ENST00000417656 LIG1P18858 919 aa13.79□□□□□ -0.2
SKA1-203ENST00000417656 SARSP49591 514 aaKnown RBP13.79□□□□□ -0.2
SKA1-203ENST00000417656 PEX3P56589 373 aa13.79□□□□□ -0.2
SKA1-203ENST00000417656 POU5F1BQ06416 359 aa13.79□□□□□ -0.2
SKA1-203ENST00000417656 DMP1Q13316 513 aaPredicted RBP13.79□□□□□ -0.2
SKA1-203ENST00000417656 E2F4Q16254 413 aa13.79□□□□□ -0.2
SKA1-203ENST00000417656 TPRNQ4KMQ1 711 aa13.79□□□□□ -0.2
SKA1-203ENST00000417656 NPAS4Q8IUM7 802 aa13.79□□□□□ -0.2
SKA1-203ENST00000417656 TOP1MTQ969P6 601 aa13.79□□□□□ -0.2
SKA1-203ENST00000417656 TIFAQ96CG3 184 aa13.79□□□□□ -0.2
SKA1-203ENST00000417656 ZBED2Q9BTP6 218 aa13.79□□□□□ -0.2
SKA1-203ENST00000417656 C2orf40Q9H1Z8 148 aa13.79□□□□□ -0.2
SKA1-203ENST00000417656 RGS18Q9NS28 235 aa13.79□□□□□ -0.2
SKA1-203ENST00000417656 C1orf112Q9NSG2 853 aa13.79□□□□□ -0.2
SKA1-203ENST00000417656 FAM13BQ9NYF5 915 aa13.79□□□□□ -0.2
SKA1-203ENST00000417656 MSRAQ9UJ68 235 aa13.79□□□□□ -0.2
SKA1-203ENST00000417656 PCDHA11Q9Y5I1 949 aa13.79□□□□□ -0.2
SKA1-203ENST00000417656 COL4A4P53420 1690 aaPredicted RBP13.79□□□□□ -0.2
SKA1-203ENST00000417656 KIAA1671Q9BY89 1806 aa13.78□□□□□ -0.2
SKA1-203ENST00000417656 CCDC169A6NNP5 214 aa13.78□□□□□ -0.2
SKA1-203ENST00000417656 C9IYK1 514 aa13.78□□□□□ -0.2
SKA1-203ENST00000417656 TBCAO75347 108 aaKnown RBP13.78□□□□□ -0.2
SKA1-203ENST00000417656 ARHGEF15O94989 841 aa13.78□□□□□ -0.2
SKA1-203ENST00000417656 CA3P07451 260 aa13.78□□□□□ -0.2
SKA1-203ENST00000417656 PFKFB1P16118 471 aa13.78□□□□□ -0.2
SKA1-203ENST00000417656 NPTX2P47972 431 aa13.78□□□□□ -0.2
SKA1-203ENST00000417656 AMHR2Q16671 573 aa13.78□□□□□ -0.2
SKA1-203ENST00000417656 TWF2Q6IBS0 349 aaKnown RBP13.78□□□□□ -0.2
SKA1-203ENST00000417656 SLC24A5Q71RS6 500 aa13.78□□□□□ -0.2
SKA1-203ENST00000417656 CPB2Q96IY4 423 aa13.78□□□□□ -0.2
SKA1-203ENST00000417656 CCDC113Q9H0I3 377 aa13.78□□□□□ -0.2
SKA1-203ENST00000417656 CHMP5Q9NZZ3 219 aa13.78□□□□□ -0.2
SKA1-203ENST00000417656 LRFN2Q9ULH4 789 aa13.78□□□□□ -0.2
SKA1-203ENST00000417656 ODF2LQ9ULJ1 636 aa13.78□□□□□ -0.2
SKA1-203ENST00000417656 PHLPP2Q6ZVD8 1323 aa13.78□□□□□ -0.2
SKA1-203ENST00000417656 MYMKA6NI61 221 aa13.77□□□□□ -0.21
SKA1-203ENST00000417656 SLC16A4O15374 487 aa13.77□□□□□ -0.21
SKA1-203ENST00000417656 POLR2DO15514 142 aaKnown RBP13.77□□□□□ -0.21
SKA1-203ENST00000417656 FAM13AO94988 1023 aa13.77□□□□□ -0.21
SKA1-203ENST00000417656 EDN1P05305 212 aa13.77□□□□□ -0.21
SKA1-203ENST00000417656 PRKCBP05771 671 aa13.77□□□□□ -0.21
SKA1-203ENST00000417656 PLS3P13797 630 aa13.77□□□□□ -0.21
SKA1-203ENST00000417656 HOXA11P31270 313 aaPredicted RBP13.77□□□□□ -0.21
SKA1-203ENST00000417656 GATMP50440 423 aa13.77□□□□□ -0.21
SKA1-203ENST00000417656 HTRA4P83105 476 aaPredicted RBP13.77□□□□□ -0.21
SKA1-203ENST00000417656 GIT2Q14161 759 aa13.77□□□□□ -0.21
SKA1-203ENST00000417656 FNDC1Q4ZHG4 1894 aaPredicted RBP13.77□□□□□ -0.21
SKA1-203ENST00000417656 ZNF697Q5TEC3 545 aa13.77□□□□□ -0.21
SKA1-203ENST00000417656 PPP2R2DQ66LE6 453 aa13.77□□□□□ -0.21
SKA1-203ENST00000417656 ADALQ6DHV7 355 aa13.77□□□□□ -0.21
SKA1-203ENST00000417656 SV2BQ7L1I2 683 aa13.77□□□□□ -0.21
SKA1-203ENST00000417656 DYMQ7RTS9 669 aa13.77□□□□□ -0.21
SKA1-203ENST00000417656 NLRC5Q86WI3 1866 aa13.77□□□□□ -0.21
SKA1-203ENST00000417656 CRIPAKQ8N1N5 446 aa13.77□□□□□ -0.21
SKA1-203ENST00000417656 RNF169Q8NCN4 708 aa13.77□□□□□ -0.21
SKA1-203ENST00000417656 STAMQ92783 540 aa13.77□□□□□ -0.21
SKA1-203ENST00000417656 YME1L1Q96TA2 773 aa13.77□□□□□ -0.21
SKA1-203ENST00000417656 ZHX3Q9H4I2 956 aa13.77□□□□□ -0.21
SKA1-203ENST00000417656 RC3H2Q9HBD1 1191 aaKnown RBP13.77□□□□□ -0.21
SKA1-203ENST00000417656 KMT5AQ9NQR1 393 aa13.77□□□□□ -0.21
SKA1-203ENST00000417656 CHST12Q9NRB3 414 aa13.77□□□□□ -0.21
SKA1-203ENST00000417656 PRMT7Q9NVM4 692 aaPredicted RBP13.77□□□□□ -0.21
SKA1-203ENST00000417656 DACT1Q9NYF0 836 aa13.77□□□□□ -0.21
SKA1-203ENST00000417656 ARHGAP28Q9P2N2 729 aa13.77□□□□□ -0.21
SKA1-203ENST00000417656 CNTNAP2Q9UHC6 1331 aa13.77□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms