RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 CCDC85BQ15834 202 aaPredicted RBP13.67□□□□□ -0.22
COL6A3-206ENST00000409809 ZFP1Q6P2D0 407 aa13.67□□□□□ -0.22
COL6A3-206ENST00000409809 RBBP8NLQ8NC74 664 aaPredicted RBP13.67□□□□□ -0.22
COL6A3-206ENST00000409809 PSMC3IPQ9P2W1 217 aaPredicted RBP13.67□□□□□ -0.22
COL6A3-206ENST00000409809 SH3TC1Q8TE82 1336 aa13.67□□□□□ -0.22
COL6A3-206ENST00000409809 ABCB1P08183 1280 aaPredicted RBP13.66□□□□□ -0.22
COL6A3-206ENST00000409809 GHRP10912 638 aa13.66□□□□□ -0.22
COL6A3-206ENST00000409809 PECAM1P16284 738 aaPredicted RBP13.66□□□□□ -0.22
COL6A3-206ENST00000409809 SPATA4Q8NEY3 305 aa13.66□□□□□ -0.22
COL6A3-206ENST00000409809 ZCRB1Q8TBF4 217 aaKnown RBP13.66□□□□□ -0.22
COL6A3-206ENST00000409809 LRRC59Q96AG4 307 aaKnown RBP13.66□□□□□ -0.22
COL6A3-206ENST00000409809 ERBB4Q15303 1308 aa13.66□□□□□ -0.22
COL6A3-206ENST00000409809 PALMO75781 387 aa13.66□□□□□ -0.22
COL6A3-206ENST00000409809 SERPINB9P50453 376 aa13.66□□□□□ -0.22
COL6A3-206ENST00000409809 TRIP10Q15642 601 aa13.66□□□□□ -0.22
COL6A3-206ENST00000409809 NLRX1Q86UT6 975 aa13.66□□□□□ -0.22
COL6A3-206ENST00000409809 KRT73Q86Y46 540 aa13.66□□□□□ -0.22
COL6A3-206ENST00000409809 SAT1P21673 171 aa13.66□□□□□ -0.22
COL6A3-206ENST00000409809 HIPK4Q8NE63 616 aa13.66□□□□□ -0.22
COL6A3-206ENST00000409809 MTERF3Q96E29 417 aa13.66□□□□□ -0.22
COL6A3-206ENST00000409809 UNC45AQ9H3U1 944 aa13.66□□□□□ -0.22
COL6A3-206ENST00000409809 TBC1D7Q9P0N9 293 aa13.66□□□□□ -0.22
COL6A3-206ENST00000409809 SEL1LQ9UBV2 794 aa13.66□□□□□ -0.22
COL6A3-206ENST00000409809 CHMP2BQ9UQN3 213 aa13.66□□□□□ -0.22
COL6A3-206ENST00000409809 PCDH11YQ9BZA8 1340 aa13.66□□□□□ -0.22
COL6A3-206ENST00000409809 ADGRL2O95490 1459 aa13.66□□□□□ -0.22
COL6A3-206ENST00000409809 PCDH11XQ9BZA7 1347 aa13.66□□□□□ -0.22
COL6A3-206ENST00000409809 ILF2Q12905 390 aaKnown RBP13.66□□□□□ -0.22
COL6A3-206ENST00000409809 ZNF710Q8N1W2 664 aa13.66□□□□□ -0.22
COL6A3-206ENST00000409809 POP5Q969H6 163 aaKnown RBP13.66□□□□□ -0.22
COL6A3-206ENST00000409809 PRMT1Q99873 361 aaKnown RBP13.66□□□□□ -0.22
COL6A3-206ENST00000409809 ADPGKQ9BRR6 497 aa13.66□□□□□ -0.22
COL6A3-206ENST00000409809 VPS54Q9P1Q0 977 aa13.66□□□□□ -0.22
COL6A3-206ENST00000409809 TTC37Q6PGP7 1564 aa13.66□□□□□ -0.22
COL6A3-206ENST00000409809 PJA2O43164 708 aa13.66□□□□□ -0.22
COL6A3-206ENST00000409809 NELFCDQ8IXH7 590 aa13.66□□□□□ -0.22
COL6A3-206ENST00000409809 CROCC2H7BZ55 1655 aa13.66□□□□□ -0.22
COL6A3-206ENST00000409809 VCAM1P19320 739 aa13.66□□□□□ -0.22
COL6A3-206ENST00000409809 KYNUQ16719 465 aa13.66□□□□□ -0.22
COL6A3-206ENST00000409809 PGBD1Q96JS3 809 aa13.66□□□□□ -0.22
COL6A3-206ENST00000409809 SLC12A6Q9UHW9 1150 aa13.66□□□□□ -0.22
COL6A3-206ENST00000409809 TK2O00142 265 aa13.66□□□□□ -0.22
COL6A3-206ENST00000409809 SLC26A4O43511 780 aa13.66□□□□□ -0.22
COL6A3-206ENST00000409809 RGS20O76081 388 aa13.66□□□□□ -0.22
COL6A3-206ENST00000409809 GJA8P48165 433 aa13.66□□□□□ -0.22
COL6A3-206ENST00000409809 EPHB1P54762 984 aa13.66□□□□□ -0.22
COL6A3-206ENST00000409809 RAPGEF5Q92565 580 aa13.66□□□□□ -0.22
COL6A3-206ENST00000409809 MYOM2P54296 1465 aa13.66□□□□□ -0.22
COL6A3-206ENST00000409809 MB21D1Q8N884 522 aa13.65□□□□□ -0.22
COL6A3-206ENST00000409809 LPIN2Q92539 896 aa13.65□□□□□ -0.22
COL6A3-206ENST00000409809 OTULINQ96BN8 352 aa13.65□□□□□ -0.22
COL6A3-206ENST00000409809 SLC1A1P43005 524 aa13.65□□□□□ -0.22
COL6A3-206ENST00000409809 HIF1AQ16665 826 aa13.65□□□□□ -0.22
COL6A3-206ENST00000409809 NAALADL2Q58DX5 795 aa13.65□□□□□ -0.22
COL6A3-206ENST00000409809 UGP2Q16851 508 aa13.65□□□□□ -0.22
COL6A3-206ENST00000409809 FAM173BQ6P4H8 233 aa13.65□□□□□ -0.22
COL6A3-206ENST00000409809 RASGRP2Q7LDG7 609 aa13.65□□□□□ -0.22
COL6A3-206ENST00000409809 TRMT1LQ7Z2T5 733 aaKnown RBP13.65□□□□□ -0.22
COL6A3-206ENST00000409809 USP19O94966 1318 aa13.65□□□□□ -0.22
COL6A3-206ENST00000409809 NUP153P49790 1475 aaKnown RBP13.65□□□□□ -0.22
COL6A3-206ENST00000409809 ALBP02768 609 aa13.65□□□□□ -0.22
COL6A3-206ENST00000409809 GSPT1P15170 499 aaKnown RBP13.65□□□□□ -0.22
COL6A3-206ENST00000409809 NQO1P15559 274 aaKnown RBP13.65□□□□□ -0.22
COL6A3-206ENST00000409809 FAM227BQ96M60 508 aa13.65□□□□□ -0.22
COL6A3-206ENST00000409809 TSPYL6Q8N831 410 aa13.65□□□□□ -0.22
COL6A3-206ENST00000409809 PLBD2Q8NHP8 589 aa13.65□□□□□ -0.22
COL6A3-206ENST00000409809 UHMK1Q8TAS1 419 aaKnown RBP13.65□□□□□ -0.22
COL6A3-206ENST00000409809 CYGBQ8WWM9 190 aa13.65□□□□□ -0.22
COL6A3-206ENST00000409809 AGBL1Q96MI9 1066 aa13.65□□□□□ -0.22
COL6A3-206ENST00000409809 XPO6Q96QU8 1125 aaKnown RBP13.65□□□□□ -0.22
COL6A3-206ENST00000409809 SETDB2Q96T68 719 aa13.65□□□□□ -0.22
COL6A3-206ENST00000409809 ATP7AQ04656 1500 aa13.65□□□□□ -0.22
COL6A3-206ENST00000409809 STK36Q9NRP7 1315 aa13.65□□□□□ -0.22
COL6A3-206ENST00000409809 ASXL2Q76L83 1435 aa13.65□□□□□ -0.22
COL6A3-206ENST00000409809 FTCDO95954 541 aa13.65□□□□□ -0.22
COL6A3-206ENST00000409809 CALB2P22676 271 aa13.65□□□□□ -0.22
COL6A3-206ENST00000409809 FAM133AQ8N9E0 248 aa13.65□□□□□ -0.22
COL6A3-206ENST00000409809 FAR2Q96K12 515 aa13.65□□□□□ -0.22
COL6A3-206ENST00000409809 AIPL1Q9NZN9 384 aa13.65□□□□□ -0.22
COL6A3-206ENST00000409809 FAM153AQ9UHL3 310 aa13.65□□□□□ -0.22
COL6A3-206ENST00000409809 DCTN4Q9UJW0 460 aa13.65□□□□□ -0.22
COL6A3-206ENST00000409809 ADGRG1Q9Y653 693 aa13.65□□□□□ -0.22
COL6A3-206ENST00000409809 IGF2BP3O00425 579 aaKnown RBP eCLIP13.65□□□□□ -0.22
COL6A3-206ENST00000409809 CPA1P15085 419 aa13.65□□□□□ -0.22
COL6A3-206ENST00000409809 IDI1Q13907 227 aa13.65□□□□□ -0.22
COL6A3-206ENST00000409809 PTGISQ16647 500 aa13.65□□□□□ -0.22
COL6A3-206ENST00000409809 SWT1Q5T5J6 900 aaKnown RBP13.65□□□□□ -0.22
COL6A3-206ENST00000409809 FAM45BPQ6NSW5 357 aa13.65□□□□□ -0.22
COL6A3-206ENST00000409809 SNX12Q9UMY4 172 aa13.65□□□□□ -0.22
COL6A3-206ENST00000409809 PCDHB4Q9Y5E5 795 aa13.65□□□□□ -0.22
COL6A3-206ENST00000409809 COMMD3-BMI1R4GMX3 469 aa13.65□□□□□ -0.22
COL6A3-206ENST00000409809 TNPO2O14787 897 aaKnown RBP13.64□□□□□ -0.23
COL6A3-206ENST00000409809 TLR3O15455 904 aaKnown RBP13.64□□□□□ -0.23
COL6A3-206ENST00000409809 MYO1DO94832 1006 aa13.64□□□□□ -0.23
COL6A3-206ENST00000409809 WASHC2DQ5SRD0 308 aa13.64□□□□□ -0.23
COL6A3-206ENST00000409809 ENOSF1Q7L5Y1 443 aa13.64□□□□□ -0.23
COL6A3-206ENST00000409809 SSH3Q8TE77 659 aa13.64□□□□□ -0.23
COL6A3-206ENST00000409809 MAP4K1Q92918 833 aa13.64□□□□□ -0.23
COL6A3-206ENST00000409809 PPP2R3CQ969Q6 453 aa13.64□□□□□ -0.23
COL6A3-206ENST00000409809 KRT72Q14CN4 511 aa13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 62.5 ms