RNA–Protein interactions for RNA: ENST00000409403.6

CLK1-202, Transcript of CDC like kinase 1, humanhuman

TSL 5

Gene CLK1, Length 1,664 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-202ENST00000409403 CFAP100Q494V2 611 aa6.2□□□□□ -1.42
CLK1-202ENST00000409403 CCDC158Q5M9N0 1113 aa6.2□□□□□ -1.42
CLK1-202ENST00000409403 ZCCHC8Q6NZY4 707 aaKnown RBP6.2□□□□□ -1.42
CLK1-202ENST00000409403 UBE2R2Q712K3 238 aaPredicted RBP6.2□□□□□ -1.42
CLK1-202ENST00000409403 PLA2G4DQ86XP0 818 aa6.2□□□□□ -1.42
CLK1-202ENST00000409403 ZC3H7AQ8IWR0 971 aaKnown RBP6.2□□□□□ -1.42
CLK1-202ENST00000409403 RPUSD2Q8IZ73 545 aaKnown RBP6.2□□□□□ -1.42
CLK1-202ENST00000409403 MSL3Q8N5Y2 521 aaKnown RBP6.2□□□□□ -1.42
CLK1-202ENST00000409403 NEK11Q8NG66 645 aa6.2□□□□□ -1.42
CLK1-202ENST00000409403 TDRD7Q8NHU6 1098 aaKnown RBP6.2□□□□□ -1.42
CLK1-202ENST00000409403 GTF3C6Q969F1 213 aa6.2□□□□□ -1.42
CLK1-202ENST00000409403 IL17RAQ96F46 866 aa6.2□□□□□ -1.42
CLK1-202ENST00000409403 MAP6Q96JE9 813 aa6.2□□□□□ -1.42
CLK1-202ENST00000409403 TIMM13Q9Y5L4 95 aaPredicted RBP6.2□□□□□ -1.42
CLK1-202ENST00000409403 LTN1O94822 1766 aa6.19□□□□□ -1.42
CLK1-202ENST00000409403 KIAA0100Q14667 2235 aaKnown RBP6.19□□□□□ -1.42
CLK1-202ENST00000409403 C7orf72A4D263 438 aa6.19□□□□□ -1.42
CLK1-202ENST00000409403 NPHS1O60500 1241 aa6.19□□□□□ -1.42
CLK1-202ENST00000409403 KPNA6O60684 536 aa6.19□□□□□ -1.42
CLK1-202ENST00000409403 EIF3JO75822 258 aaKnown RBP6.19□□□□□ -1.42
CLK1-202ENST00000409403 ZRANB2O95218 330 aaKnown RBP eCLIP6.19□□□□□ -1.42
CLK1-202ENST00000409403 PRNPP04156 253 aa6.19□□□□□ -1.42
CLK1-202ENST00000409403 GTF2A2P52657 109 aa6.19□□□□□ -1.42
CLK1-202ENST00000409403 RPL11P62913 178 aaKnown RBP6.19□□□□□ -1.42
CLK1-202ENST00000409403 NFKB2Q00653 900 aa6.19□□□□□ -1.42
CLK1-202ENST00000409403 ZP2Q05996 745 aa6.19□□□□□ -1.42
CLK1-202ENST00000409403 DUSP4Q13115 394 aa6.19□□□□□ -1.42
CLK1-202ENST00000409403 SARM1Q6SZW1 724 aa6.19□□□□□ -1.42
CLK1-202ENST00000409403 DDX46Q7L014 1031 aaKnown RBP6.19□□□□□ -1.42
CLK1-202ENST00000409403 DDX53Q86TM3 631 aaKnown RBP6.19□□□□□ -1.42
CLK1-202ENST00000409403 JAMLQ86YT9 394 aa6.19□□□□□ -1.42
CLK1-202ENST00000409403 ERC1Q8IUD2 1116 aa6.19□□□□□ -1.42
CLK1-202ENST00000409403 LEO1Q8WVC0 666 aaPredicted RBP6.19□□□□□ -1.42
CLK1-202ENST00000409403 G6PC3Q9BUM1 346 aa6.19□□□□□ -1.42
CLK1-202ENST00000409403 UBXN6Q9BZV1 441 aa6.19□□□□□ -1.42
CLK1-202ENST00000409403 TRIM5Q9C035 493 aa6.19□□□□□ -1.42
CLK1-202ENST00000409403 DDX19AQ9NUU7 478 aaKnown RBP6.19□□□□□ -1.42
CLK1-202ENST00000409403 CLIP2Q9UDT6 1046 aa6.19□□□□□ -1.42
CLK1-202ENST00000409403 ATP8A1Q9Y2Q0 1164 aa6.19□□□□□ -1.42
CLK1-202ENST00000409403 FADS2P1A8MWK0 482 aa6.18□□□□□ -1.42
CLK1-202ENST00000409403 GOLIM4O00461 696 aa6.18□□□□□ -1.42
CLK1-202ENST00000409403 ZSCAN22P10073 491 aaPredicted RBP6.18□□□□□ -1.42
CLK1-202ENST00000409403 CD8BP10966 210 aa6.18□□□□□ -1.42
CLK1-202ENST00000409403 IL2RBP14784 551 aa6.18□□□□□ -1.42
CLK1-202ENST00000409403 POU3F3P20264 500 aaPredicted RBP6.18□□□□□ -1.42
CLK1-202ENST00000409403 ITGB7P26010 798 aa6.18□□□□□ -1.42
CLK1-202ENST00000409403 EIF5P55010 431 aaKnown RBP6.18□□□□□ -1.42
CLK1-202ENST00000409403 CORO7P57737 925 aa6.18□□□□□ -1.42
CLK1-202ENST00000409403 TUBB4BP68371 445 aa6.18□□□□□ -1.42
CLK1-202ENST00000409403 PIK3R6Q5UE93 754 aa6.18□□□□□ -1.42
CLK1-202ENST00000409403 LRCH2Q5VUJ6 765 aa6.18□□□□□ -1.42
CLK1-202ENST00000409403 CST9Q5W186 159 aa6.18□□□□□ -1.42
CLK1-202ENST00000409403 PKN3Q6P5Z2 889 aa6.18□□□□□ -1.42
CLK1-202ENST00000409403 VSIG10LQ86VR7 867 aa6.18□□□□□ -1.42
CLK1-202ENST00000409403 PCDH19Q8TAB3 1148 aa6.18□□□□□ -1.42
CLK1-202ENST00000409403 STAG1Q8WVM7 1258 aa6.18□□□□□ -1.42
CLK1-202ENST00000409403 LINC01599Q8WXQ3 324 aa6.18□□□□□ -1.42
CLK1-202ENST00000409403 SSH1Q8WYL5 1049 aa6.18□□□□□ -1.42
CLK1-202ENST00000409403 HHIPL1Q96JK4 782 aa6.18□□□□□ -1.42
CLK1-202ENST00000409403 ALPK1Q96QP1 1244 aa6.18□□□□□ -1.42
CLK1-202ENST00000409403 FAM126AQ9BYI3 521 aaPredicted RBP6.18□□□□□ -1.42
CLK1-202ENST00000409403 NUP62CLQ9H1M0 184 aa6.18□□□□□ -1.42
CLK1-202ENST00000409403 SLAMF8Q9P0V8 285 aa6.18□□□□□ -1.42
CLK1-202ENST00000409403 KCNG1Q9UIX4 513 aa6.18□□□□□ -1.42
CLK1-202ENST00000409403 MCM8Q9UJA3 840 aa6.18□□□□□ -1.42
CLK1-202ENST00000409403 NOB1Q9ULX3 412 aaKnown RBP6.18□□□□□ -1.42
CLK1-202ENST00000409403 SUFUQ9UMX1 484 aa6.18□□□□□ -1.42
CLK1-202ENST00000409403 PALLDQ8WX93 1383 aa6.18□□□□□ -1.42
CLK1-202ENST00000409403 PHLPP2Q6ZVD8 1323 aa6.17□□□□□ -1.42
CLK1-202ENST00000409403 HTTP42858 3142 aa6.17□□□□□ -1.42
CLK1-202ENST00000409403 EFCAB8A8MWE9 144 aa6.17□□□□□ -1.42
CLK1-202ENST00000409403 TRAF5O00463 557 aa6.17□□□□□ -1.42
CLK1-202ENST00000409403 SGSM2O43147 1006 aa6.17□□□□□ -1.42
CLK1-202ENST00000409403 SOD2P04179 222 aa6.17□□□□□ -1.42
CLK1-202ENST00000409403 ZGLP1P0C6A0 271 aa6.17□□□□□ -1.42
CLK1-202ENST00000409403 GSPT1P15170 499 aaKnown RBP6.17□□□□□ -1.42
CLK1-202ENST00000409403 CASTP20810 708 aaKnown RBP6.17□□□□□ -1.42
CLK1-202ENST00000409403 OAS2P29728 719 aaKnown RBP6.17□□□□□ -1.42
CLK1-202ENST00000409403 LSAMPQ13449 338 aa6.17□□□□□ -1.42
CLK1-202ENST00000409403 SMC1AQ14683 1233 aaKnown RBP6.17□□□□□ -1.42
CLK1-202ENST00000409403 PCBP1Q15365 356 aaKnown RBP eCLIP6.17□□□□□ -1.42
CLK1-202ENST00000409403 ARHGAP29Q52LW3 1261 aa6.17□□□□□ -1.42
CLK1-202ENST00000409403 CDCA2Q69YH5 1023 aaPredicted RBP6.17□□□□□ -1.42
CLK1-202ENST00000409403 ABHD17CQ6PCB6 329 aa6.17□□□□□ -1.42
CLK1-202ENST00000409403 Q7L0L9 218 aa6.17□□□□□ -1.42
CLK1-202ENST00000409403 SPRED2Q7Z698 418 aa6.17□□□□□ -1.42
CLK1-202ENST00000409403 AFAP1L2Q8N4X5 818 aa6.17□□□□□ -1.42
CLK1-202ENST00000409403 CCDC150Q8NCX0 1101 aa6.17□□□□□ -1.42
CLK1-202ENST00000409403 TBC1D22AQ8WUA7 517 aa6.17□□□□□ -1.42
CLK1-202ENST00000409403 DNAAF4Q8WXU2 420 aa6.17□□□□□ -1.42
CLK1-202ENST00000409403 SMARCE1Q969G3 411 aa6.17□□□□□ -1.42
CLK1-202ENST00000409403 ZBTB9Q96C00 473 aa6.17□□□□□ -1.42
CLK1-202ENST00000409403 CHMP4CQ96CF2 233 aa6.17□□□□□ -1.42
CLK1-202ENST00000409403 DDX11Q96FC9 970 aa6.17□□□□□ -1.42
CLK1-202ENST00000409403 WNK4Q96J92 1243 aa6.17□□□□□ -1.42
CLK1-202ENST00000409403 CHAMP1Q96JM3 812 aa6.17□□□□□ -1.42
CLK1-202ENST00000409403 ADAMTS10Q9H324 1103 aa6.17□□□□□ -1.42
CLK1-202ENST00000409403 SAMD15Q9P1V8 674 aa6.17□□□□□ -1.42
CLK1-202ENST00000409403 IMPACTQ9P2X3 320 aa6.17□□□□□ -1.42
CLK1-202ENST00000409403 STXBP5LQ9Y2K9 1186 aa6.17□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms