RNA–Protein interactions for RNA: ENST00000400018.7

SKA3-203, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SKA3, Length 2,745 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-203ENST00000400018 INO80B-WBP1J3KQ70 363 aa12.83□□□□□ -0.35
SKA3-203ENST00000400018 IGHA2P01877 340 aa12.83□□□□□ -0.35
SKA3-203ENST00000400018 NR3C1P04150 777 aa12.83□□□□□ -0.35
SKA3-203ENST00000400018 COPB1P53618 953 aaKnown RBP12.83□□□□□ -0.35
SKA3-203ENST00000400018 UVSSAQ2YD98 709 aa12.83□□□□□ -0.35
SKA3-203ENST00000400018 CCDC40Q4G0X9 1142 aa12.83□□□□□ -0.35
SKA3-203ENST00000400018 MTERF4Q7Z6M4 381 aaKnown RBP12.83□□□□□ -0.35
SKA3-203ENST00000400018 CBWD2Q8IUF1 395 aa12.83□□□□□ -0.35
SKA3-203ENST00000400018 CCDC127Q96BQ5 260 aa12.83□□□□□ -0.35
SKA3-203ENST00000400018 DHTKD1Q96HY7 919 aaPredicted RBP12.83□□□□□ -0.35
SKA3-203ENST00000400018 PDLIM2Q96JY6 352 aa12.83□□□□□ -0.35
SKA3-203ENST00000400018 SCLT1Q96NL6 688 aa12.83□□□□□ -0.35
SKA3-203ENST00000400018 BEGAINQ9BUH8 593 aa12.83□□□□□ -0.35
SKA3-203ENST00000400018 NIFKQ9BYG3 293 aaKnown RBP12.83□□□□□ -0.35
SKA3-203ENST00000400018 INO80BQ9C086 356 aaPredicted RBP12.83□□□□□ -0.35
SKA3-203ENST00000400018 LRRC27Q9C0I9 530 aa12.83□□□□□ -0.35
SKA3-203ENST00000400018 UNC93B1Q9H1C4 597 aa12.83□□□□□ -0.35
SKA3-203ENST00000400018 KCNF1Q9H3M0 494 aa12.83□□□□□ -0.35
SKA3-203ENST00000400018 MAFO75444 373 aaPredicted RBP12.83□□□□□ -0.36
SKA3-203ENST00000400018 ACTN1P12814 892 aa12.83□□□□□ -0.36
SKA3-203ENST00000400018 NLRP11P59045 1033 aaKnown RBP12.83□□□□□ -0.36
SKA3-203ENST00000400018 UBXN1Q04323 297 aa12.83□□□□□ -0.36
SKA3-203ENST00000400018 MFSD10Q14728 455 aa12.83□□□□□ -0.36
SKA3-203ENST00000400018 TMEM192Q8IY95 271 aa12.83□□□□□ -0.36
SKA3-203ENST00000400018 ZNF507Q8TCN5 953 aa12.83□□□□□ -0.36
SKA3-203ENST00000400018 PLEKHO2Q8TD55 490 aa12.83□□□□□ -0.36
SKA3-203ENST00000400018 AGPAT3Q9NRZ7 376 aa12.83□□□□□ -0.36
SKA3-203ENST00000400018 ODF2LQ9ULJ1 636 aa12.83□□□□□ -0.36
SKA3-203ENST00000400018 TBX20Q9UMR3 447 aa12.83□□□□□ -0.36
SKA3-203ENST00000400018 EMSYQ7Z589 1322 aa12.83□□□□□ -0.36
SKA3-203ENST00000400018 HNRNPDLO14979 420 aaKnown RBP12.82□□□□□ -0.36
SKA3-203ENST00000400018 PPP1R37O75864 691 aa12.82□□□□□ -0.36
SKA3-203ENST00000400018 PNMA6AP0CW24 399 aaPredicted RBP12.82□□□□□ -0.36
SKA3-203ENST00000400018 MATR3P43243 847 aaKnown RBP eCLIP12.82□□□□□ -0.36
SKA3-203ENST00000400018 PURAQ00577 322 aaKnown RBP12.82□□□□□ -0.36
SKA3-203ENST00000400018 ENOX2Q16206 610 aaKnown RBP12.82□□□□□ -0.36
SKA3-203ENST00000400018 NBPF20Q3BBV1 942 aa12.82□□□□□ -0.36
SKA3-203ENST00000400018 MIIPQ5JXC2 388 aa12.82□□□□□ -0.36
SKA3-203ENST00000400018 PLPPR4Q7Z2D5 763 aa12.82□□□□□ -0.36
SKA3-203ENST00000400018 DNAJC5GQ8N7S2 189 aa12.82□□□□□ -0.36
SKA3-203ENST00000400018 TMEM40Q8WWA1 233 aa12.82□□□□□ -0.36
SKA3-203ENST00000400018 OSMRQ99650 979 aa12.82□□□□□ -0.36
SKA3-203ENST00000400018 NOC4LQ9BVI4 516 aaKnown RBP12.82□□□□□ -0.36
SKA3-203ENST00000400018 CCDC94Q9BW85 323 aaPredicted RBP12.82□□□□□ -0.36
SKA3-203ENST00000400018 OLFML3Q9NRN5 406 aa12.82□□□□□ -0.36
SKA3-203ENST00000400018 RARBP10826 455 aa12.82□□□□□ -0.36
SKA3-203ENST00000400018 ARL2P36404 184 aa12.82□□□□□ -0.36
SKA3-203ENST00000400018 TNFSF9P41273 254 aa12.82□□□□□ -0.36
SKA3-203ENST00000400018 GJB7Q6PEY0 223 aa12.82□□□□□ -0.36
SKA3-203ENST00000400018 MTHFD1LQ6UB35 978 aa12.82□□□□□ -0.36
SKA3-203ENST00000400018 DEPTORQ8TB45 409 aa12.82□□□□□ -0.36
SKA3-203ENST00000400018 FAM212AQ96EL1 285 aa12.82□□□□□ -0.36
SKA3-203ENST00000400018 DRC1Q96MC2 740 aa12.82□□□□□ -0.36
SKA3-203ENST00000400018 TRMT13Q9NUP7 481 aaKnown RBP12.82□□□□□ -0.36
SKA3-203ENST00000400018 GRIN2DO15399 1336 aa12.82□□□□□ -0.36
SKA3-203ENST00000400018 SEPT4O43236 478 aa12.82□□□□□ -0.36
SKA3-203ENST00000400018 ADRB2P07550 413 aa12.82□□□□□ -0.36
SKA3-203ENST00000400018 GRK4P32298 578 aa12.82□□□□□ -0.36
SKA3-203ENST00000400018 LBX1P52954 281 aa12.82□□□□□ -0.36
SKA3-203ENST00000400018 PSMD2Q13200 908 aa12.82□□□□□ -0.36
SKA3-203ENST00000400018 EEF1DP3Q658K8 133 aa12.82□□□□□ -0.36
SKA3-203ENST00000400018 CACTINQ8WUQ7 758 aaKnown RBP12.82□□□□□ -0.36
SKA3-203ENST00000400018 NLRP7Q8WX94 980 aa12.82□□□□□ -0.36
SKA3-203ENST00000400018 GBP3Q9H0R5 595 aa12.82□□□□□ -0.36
SKA3-203ENST00000400018 FAM207AQ9NSI2 230 aaPredicted RBP12.82□□□□□ -0.36
SKA3-203ENST00000400018 HBP1O60381 514 aa12.81□□□□□ -0.36
SKA3-203ENST00000400018 MAPTP10636 758 aaKnown RBP12.81□□□□□ -0.36
SKA3-203ENST00000400018 XRCC5P13010 732 aaKnown RBP12.81□□□□□ -0.36
SKA3-203ENST00000400018 PSEN2P49810 448 aa12.81□□□□□ -0.36
SKA3-203ENST00000400018 ATN1P54259 1190 aaPredicted RBP12.81□□□□□ -0.36
SKA3-203ENST00000400018 CCDC173Q0VFZ6 552 aa12.81□□□□□ -0.36
SKA3-203ENST00000400018 NR1I3Q14994 352 aa12.81□□□□□ -0.36
SKA3-203ENST00000400018 GDF6Q6KF10 455 aaPredicted RBP12.81□□□□□ -0.36
SKA3-203ENST00000400018 NFRKBQ6P4R8 1299 aa12.81□□□□□ -0.36
SKA3-203ENST00000400018 PCMTD1Q96MG8 357 aaPredicted RBP12.81□□□□□ -0.36
SKA3-203ENST00000400018 FAM213AQ9BRX8 229 aa12.81□□□□□ -0.36
SKA3-203ENST00000400018 STRA6Q9BX79 667 aa12.81□□□□□ -0.36
SKA3-203ENST00000400018 HES2Q9Y543 173 aa12.81□□□□□ -0.36
SKA3-203ENST00000400018 STK24Q9Y6E0 443 aa12.81□□□□□ -0.36
SKA3-203ENST00000400018 K7ERI5 159 aa12.81□□□□□ -0.36
SKA3-203ENST00000400018 DYNC1I1O14576 645 aa12.81□□□□□ -0.36
SKA3-203ENST00000400018 EXOC3O60645 756 aa12.81□□□□□ -0.36
SKA3-203ENST00000400018 ADAMTS4O75173 837 aa12.81□□□□□ -0.36
SKA3-203ENST00000400018 GAP43P17677 238 aa12.81□□□□□ -0.36
SKA3-203ENST00000400018 NCKAP1LP55160 1127 aa12.81□□□□□ -0.36
SKA3-203ENST00000400018 TPM4P67936 248 aa12.81□□□□□ -0.36
SKA3-203ENST00000400018 CBX1P83916 185 aa12.81□□□□□ -0.36
SKA3-203ENST00000400018 TMEM132AQ24JP5 1023 aa12.81□□□□□ -0.36
SKA3-203ENST00000400018 ARMCX5Q6P1M9 558 aa12.81□□□□□ -0.36
SKA3-203ENST00000400018 DNAAF5Q86Y56 855 aa12.81□□□□□ -0.36
SKA3-203ENST00000400018 KIAA0319LQ8IZA0 1049 aa12.81□□□□□ -0.36
SKA3-203ENST00000400018 IFT74Q96LB3 600 aa12.81□□□□□ -0.36
SKA3-203ENST00000400018 DEFB118Q96PH6 123 aa12.81□□□□□ -0.36
SKA3-203ENST00000400018 PYCARDQ9ULZ3 195 aa12.81□□□□□ -0.36
SKA3-203ENST00000400018 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP12.81□□□□□ -0.36
SKA3-203ENST00000400018 XIRP2A4UGR9 3374 aa12.8□□□□□ -0.36
SKA3-203ENST00000400018 F2P00734 622 aa12.8□□□□□ -0.36
SKA3-203ENST00000400018 FXR1P51114 621 aaKnown RBP eCLIP12.8□□□□□ -0.36
SKA3-203ENST00000400018 FKBP3Q00688 224 aaKnown RBP12.8□□□□□ -0.36
SKA3-203ENST00000400018 MCPH1Q8NEM0 835 aa12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms