RNA–Protein interactions for RNA: ENST00000399494.5

HMGB1-205, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 1,282 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-205ENST00000399494 MOXD1Q6UVY6 613 aa31.94■■■□□ 2.7
HMGB1-205ENST00000399494 ZNF410Q86VK4 478 aa31.94■■■□□ 2.7
HMGB1-205ENST00000399494 DAGLBQ8NCG7 672 aa31.94■■■□□ 2.7
HMGB1-205ENST00000399494 INO80BQ9C086 356 aaPredicted RBP31.94■■■□□ 2.7
HMGB1-205ENST00000399494 ADAM7Q9H2U9 754 aa31.94■■■□□ 2.7
HMGB1-205ENST00000399494 SUCLA2Q9P2R7 463 aaPredicted RBP31.94■■■□□ 2.7
HMGB1-205ENST00000399494 KCNJ14Q9UNX9 436 aa31.94■■■□□ 2.7
HMGB1-205ENST00000399494 PTPN5P54829 565 aa31.93■■■□□ 2.7
HMGB1-205ENST00000399494 ITIH3Q06033 890 aa31.93■■■□□ 2.7
HMGB1-205ENST00000399494 ST3GAL1Q11201 340 aa31.93■■■□□ 2.7
HMGB1-205ENST00000399494 LPPQ93052 612 aa31.93■■■□□ 2.7
HMGB1-205ENST00000399494 FDPSP14324 419 aaKnown RBP31.92■■■□□ 2.7
HMGB1-205ENST00000399494 SFPQP23246 707 aaKnown RBP eCLIP31.92■■■□□ 2.7
HMGB1-205ENST00000399494 SP100P23497 879 aaPredicted RBP31.92■■■□□ 2.7
HMGB1-205ENST00000399494 TCF15Q12870 199 aa31.92■■■□□ 2.7
HMGB1-205ENST00000399494 ANO5Q75V66 913 aa31.92■■■□□ 2.7
HMGB1-205ENST00000399494 RHPN2Q8IUC4 686 aa31.92■■■□□ 2.7
HMGB1-205ENST00000399494 VPS52Q8N1B4 723 aa31.92■■■□□ 2.7
HMGB1-205ENST00000399494 RSPH1Q8WYR4 309 aa31.92■■■□□ 2.7
HMGB1-205ENST00000399494 TMEM169Q96HH4 297 aa31.92■■■□□ 2.7
HMGB1-205ENST00000399494 PHF20Q9BVI0 1012 aa31.92■■■□□ 2.7
HMGB1-205ENST00000399494 NR2E1Q9Y466 385 aa31.92■■■□□ 2.7
HMGB1-205ENST00000399494 SKIP12755 728 aa31.91■■■□□ 2.7
HMGB1-205ENST00000399494 BMS1Q14692 1282 aaKnown RBP31.91■■■□□ 2.7
HMGB1-205ENST00000399494 LONRF3Q496Y0 759 aa31.91■■■□□ 2.7
HMGB1-205ENST00000399494 TWF2Q6IBS0 349 aaKnown RBP31.91■■■□□ 2.7
HMGB1-205ENST00000399494 CES5AQ6NT32 575 aa31.91■■■□□ 2.7
HMGB1-205ENST00000399494 TMEM173Q86WV6 379 aaPredicted RBP31.91■■■□□ 2.7
HMGB1-205ENST00000399494 KSR1Q8IVT5 923 aa31.91■■■□□ 2.7
HMGB1-205ENST00000399494 LLPHQ9BRT6 129 aaKnown RBP31.91■■■□□ 2.7
HMGB1-205ENST00000399494 ZBP1Q9H171 429 aa31.91■■■□□ 2.7
HMGB1-205ENST00000399494 POMKQ9H5K3 350 aa31.91■■■□□ 2.7
HMGB1-205ENST00000399494 ZNF623O75123 536 aa31.9■■■□□ 2.7
HMGB1-205ENST00000399494 ZC3H11AO75152 810 aaKnown RBP eCLIP31.9■■■□□ 2.7
HMGB1-205ENST00000399494 PSMC5P62195 406 aa31.9■■■□□ 2.7
HMGB1-205ENST00000399494 TRIM29Q14134 588 aa31.9■■■□□ 2.7
HMGB1-205ENST00000399494 NECTIN4Q96NY8 510 aa31.9■■■□□ 2.7
HMGB1-205ENST00000399494 NRDE2Q9H7Z3 1164 aa31.9■■■□□ 2.7
HMGB1-205ENST00000399494 GJB4Q9NTQ9 266 aa31.9■■■□□ 2.7
HMGB1-205ENST00000399494 FAM105AQ9NUU6 356 aa31.9■■■□□ 2.7
HMGB1-205ENST00000399494 PIN4Q9Y237 131 aaKnown RBP31.9■■■□□ 2.7
HMGB1-205ENST00000399494 IRAK3Q9Y616 596 aa31.9■■■□□ 2.7
HMGB1-205ENST00000399494 MEIS3P2A8K0S8 358 aa31.89■■■□□ 2.7
HMGB1-205ENST00000399494 EML1O00423 815 aa31.89■■■□□ 2.7
HMGB1-205ENST00000399494 AVPR2P30518 371 aa31.89■■■□□ 2.7
HMGB1-205ENST00000399494 FOSBP53539 338 aa31.89■■■□□ 2.7
HMGB1-205ENST00000399494 VCPP55072 806 aaKnown RBP31.89■■■□□ 2.7
HMGB1-205ENST00000399494 NONOQ15233 471 aaKnown RBP eCLIP31.89■■■□□ 2.7
HMGB1-205ENST00000399494 DDX53Q86TM3 631 aaKnown RBP31.89■■■□□ 2.7
HMGB1-205ENST00000399494 AUTS2Q8WXX7 1259 aa31.89■■■□□ 2.7
HMGB1-205ENST00000399494 IGSF21Q96ID5 467 aa31.89■■■□□ 2.7
HMGB1-205ENST00000399494 BRMS1Q9HCU9 246 aa31.89■■■□□ 2.7
HMGB1-205ENST00000399494 TSHZ2Q9NRE2 1034 aa31.89■■■□□ 2.7
HMGB1-205ENST00000399494 TBC1D13Q9NVG8 400 aa31.89■■■□□ 2.7
HMGB1-205ENST00000399494 DDX25Q9UHL0 483 aaKnown RBP31.89■■■□□ 2.7
HMGB1-205ENST00000399494 OFD1O75665 1012 aa31.88■■■□□ 2.69
HMGB1-205ENST00000399494 GALTP07902 379 aa31.88■■■□□ 2.69
HMGB1-205ENST00000399494 CA8P35219 290 aa31.88■■■□□ 2.69
HMGB1-205ENST00000399494 POLGP54098 1239 aaPredicted RBP31.88■■■□□ 2.69
HMGB1-205ENST00000399494 INF2Q27J81 1249 aa31.88■■■□□ 2.69
HMGB1-205ENST00000399494 NOMO2Q5JPE7 1267 aa31.88■■■□□ 2.69
HMGB1-205ENST00000399494 GLB1LQ6UWU2 654 aa31.88■■■□□ 2.69
HMGB1-205ENST00000399494 CATSPER4Q7RTX7 472 aa31.88■■■□□ 2.69
HMGB1-205ENST00000399494 ZBTB33Q86T24 672 aa31.88■■■□□ 2.69
HMGB1-205ENST00000399494 KREMEN2Q8NCW0 462 aa31.88■■■□□ 2.69
HMGB1-205ENST00000399494 IFT122Q9HBG6 1241 aa31.88■■■□□ 2.69
HMGB1-205ENST00000399494 KMT2EQ8IZD2 1858 aa31.87■■■□□ 2.69
HMGB1-205ENST00000399494 CARNS1A5YM72 827 aa31.87■■■□□ 2.69
HMGB1-205ENST00000399494 C2CD4DB7Z1M9 353 aa31.87■■■□□ 2.69
HMGB1-205ENST00000399494 SLC37A4O43826 429 aa31.87■■■□□ 2.69
HMGB1-205ENST00000399494 MTHFRP42898 656 aa31.87■■■□□ 2.69
HMGB1-205ENST00000399494 MCM2P49736 904 aa31.87■■■□□ 2.69
HMGB1-205ENST00000399494 PLA2G4FQ68DD2 849 aa31.87■■■□□ 2.69
HMGB1-205ENST00000399494 KRT25Q7Z3Z0 450 aa31.87■■■□□ 2.69
HMGB1-205ENST00000399494 C12orf76Q8N812 135 aaPredicted RBP31.87■■■□□ 2.69
HMGB1-205ENST00000399494 BCL7CQ8WUZ0 217 aaPredicted RBP31.87■■■□□ 2.69
HMGB1-205ENST00000399494 RIPOR3Q96MK2 946 aa31.87■■■□□ 2.69
HMGB1-205ENST00000399494 JPH2Q9BR39 696 aaPredicted RBP31.87■■■□□ 2.69
HMGB1-205ENST00000399494 CYP26B1Q9NR63 512 aa31.87■■■□□ 2.69
HMGB1-205ENST00000399494 ZDBF2Q9HCK1 2354 aa31.87■■■□□ 2.69
HMGB1-205ENST00000399494 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP31.86■■■□□ 2.69
HMGB1-205ENST00000399494 CCDC194A0A1B0GVG4 234 aa31.86■■■□□ 2.69
HMGB1-205ENST00000399494 CTSAP10619 480 aa31.86■■■□□ 2.69
HMGB1-205ENST00000399494 RAB27AP51159 221 aa31.86■■■□□ 2.69
HMGB1-205ENST00000399494 NPEPPSP55786 919 aa31.86■■■□□ 2.69
HMGB1-205ENST00000399494 HMGN5P82970 282 aaKnown RBP31.86■■■□□ 2.69
HMGB1-205ENST00000399494 KANK3Q6NY19 840 aa31.86■■■□□ 2.69
HMGB1-205ENST00000399494 ZNF579Q8NAF0 562 aaKnown RBP31.86■■■□□ 2.69
HMGB1-205ENST00000399494 SLC22A17Q8WUG5 538 aa31.86■■■□□ 2.69
HMGB1-205ENST00000399494 NLRP4Q96MN2 994 aa31.86■■■□□ 2.69
HMGB1-205ENST00000399494 DNAJB4Q9UDY4 337 aa31.86■■■□□ 2.69
HMGB1-205ENST00000399494 PDGFBP01127 241 aaPredicted RBP31.85■■■□□ 2.69
HMGB1-205ENST00000399494 WEE2P0C1S8 567 aa31.85■■■□□ 2.69
HMGB1-205ENST00000399494 QARSP47897 775 aaKnown RBP31.85■■■□□ 2.69
HMGB1-205ENST00000399494 PPP2R5CQ13362 524 aa31.85■■■□□ 2.69
HMGB1-205ENST00000399494 GIT2Q14161 759 aa31.85■■■□□ 2.69
HMGB1-205ENST00000399494 RARS2Q5T160 578 aaKnown RBP31.85■■■□□ 2.69
HMGB1-205ENST00000399494 KCNMB3Q9NPA1 279 aa31.85■■■□□ 2.69
HMGB1-205ENST00000399494 VAV3Q9UKW4 847 aa31.85■■■□□ 2.69
HMGB1-205ENST00000399494 SORCS3Q9UPU3 1222 aa31.85■■■□□ 2.69
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms