RNA–Protein interactions for RNA: ENST00000398145.6

HPS4-202, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HPS4, Length 4,497 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-202ENST00000398145 AGPAT1Q99943 283 aa11.82□□□□□ -0.52
HPS4-202ENST00000398145 PABPC3Q9H361 631 aaKnown RBP11.82□□□□□ -0.52
HPS4-202ENST00000398145 CFAP69A5D8W1 941 aa11.82□□□□□ -0.52
HPS4-202ENST00000398145 ENO4A6NNW6 628 aa11.82□□□□□ -0.52
HPS4-202ENST00000398145 STXBP3O00186 592 aa11.82□□□□□ -0.52
HPS4-202ENST00000398145 GIPC1O14908 333 aa11.82□□□□□ -0.52
HPS4-202ENST00000398145 RPS6KA5O75582 802 aa11.82□□□□□ -0.52
HPS4-202ENST00000398145 TOM1L1O75674 476 aa11.82□□□□□ -0.52
HPS4-202ENST00000398145 SCTRP47872 440 aa11.82□□□□□ -0.52
HPS4-202ENST00000398145 VAMP7P51809 220 aa11.82□□□□□ -0.52
HPS4-202ENST00000398145 KLC1Q07866 573 aa11.82□□□□□ -0.52
HPS4-202ENST00000398145 BIRC2Q13490 618 aa11.82□□□□□ -0.52
HPS4-202ENST00000398145 ZBTB8OSQ8IWT0 167 aa11.82□□□□□ -0.52
HPS4-202ENST00000398145 CEP170P1Q96L14 293 aa11.82□□□□□ -0.52
HPS4-202ENST00000398145 ROPN1BQ9BZX4 212 aaPredicted RBP11.82□□□□□ -0.52
HPS4-202ENST00000398145 CARD9Q9H257 536 aa11.82□□□□□ -0.52
HPS4-202ENST00000398145 ROPN1Q9HAT0 212 aaPredicted RBP11.82□□□□□ -0.52
HPS4-202ENST00000398145 PI4KBQ9UBF8 816 aa11.82□□□□□ -0.52
HPS4-202ENST00000398145 NAGPAQ9UK23 515 aa11.82□□□□□ -0.52
HPS4-202ENST00000398145 VWDEQ8N2E2 1590 aa11.82□□□□□ -0.52
HPS4-202ENST00000398145 VIRMAQ69YN4 1812 aaKnown RBP11.82□□□□□ -0.52
HPS4-202ENST00000398145 TMEM120BA0PK00 339 aa11.82□□□□□ -0.52
HPS4-202ENST00000398145 COPEO14579 308 aa11.82□□□□□ -0.52
HPS4-202ENST00000398145 FOXP2O15409 715 aa11.82□□□□□ -0.52
HPS4-202ENST00000398145 BBOX1O75936 387 aa11.82□□□□□ -0.52
HPS4-202ENST00000398145 BMP6P22004 513 aa11.82□□□□□ -0.52
HPS4-202ENST00000398145 STAT2P52630 851 aa11.82□□□□□ -0.52
HPS4-202ENST00000398145 PEX3P56589 373 aa11.82□□□□□ -0.52
HPS4-202ENST00000398145 LONRF1Q17RB8 773 aa11.82□□□□□ -0.52
HPS4-202ENST00000398145 DARS2Q6PI48 645 aaKnown RBP11.82□□□□□ -0.52
HPS4-202ENST00000398145 HDAC7Q8WUI4 952 aa11.82□□□□□ -0.52
HPS4-202ENST00000398145 DYNC1LI1Q9Y6G9 523 aaKnown RBP11.82□□□□□ -0.52
HPS4-202ENST00000398145 PITPNM2Q9BZ72 1349 aa11.81□□□□□ -0.52
HPS4-202ENST00000398145 IZUMO3Q5VZ72 239 aa11.81□□□□□ -0.52
HPS4-202ENST00000398145 TRIM50Q86XT4 487 aa11.81□□□□□ -0.52
HPS4-202ENST00000398145 KIF2BQ8N4N8 673 aa11.81□□□□□ -0.52
HPS4-202ENST00000398145 AENQ8WTP8 325 aaKnown RBP11.81□□□□□ -0.52
HPS4-202ENST00000398145 EPS15L1Q9UBC2 864 aa11.81□□□□□ -0.52
HPS4-202ENST00000398145 ZNF233A6NK53 670 aa11.81□□□□□ -0.52
HPS4-202ENST00000398145 GDF11O95390 407 aa11.81□□□□□ -0.52
HPS4-202ENST00000398145 DYNC1I2Q13409 638 aaKnown RBP11.81□□□□□ -0.52
HPS4-202ENST00000398145 COL9A3Q14050 684 aaPredicted RBP11.81□□□□□ -0.52
HPS4-202ENST00000398145 KLHL38Q2WGJ6 581 aa11.81□□□□□ -0.52
HPS4-202ENST00000398145 SLC30A9Q6PML9 568 aa11.81□□□□□ -0.52
HPS4-202ENST00000398145 ATL2Q8NHH9 583 aa11.81□□□□□ -0.52
HPS4-202ENST00000398145 JDP2Q8WYK2 163 aa11.81□□□□□ -0.52
HPS4-202ENST00000398145 GLG1Q92896 1179 aa11.81□□□□□ -0.52
HPS4-202ENST00000398145 RNF25Q96BH1 459 aaPredicted RBP11.81□□□□□ -0.52
HPS4-202ENST00000398145 PICK1Q9NRD5 415 aa11.81□□□□□ -0.52
HPS4-202ENST00000398145 SPATA31A3Q5VYP0 1347 aa11.81□□□□□ -0.52
HPS4-202ENST00000398145 SLC16A3O15427 465 aaKnown RBP11.81□□□□□ -0.52
HPS4-202ENST00000398145 ITIH2P19823 946 aa11.81□□□□□ -0.52
HPS4-202ENST00000398145 MDM2Q00987 491 aaPredicted RBP11.81□□□□□ -0.52
HPS4-202ENST00000398145 C1orf146Q5VVC0 180 aa11.81□□□□□ -0.52
HPS4-202ENST00000398145 CENPPQ6IPU0 288 aa11.81□□□□□ -0.52
HPS4-202ENST00000398145 RNF34Q969K3 372 aa11.81□□□□□ -0.52
HPS4-202ENST00000398145 TRAIPQ9BWF2 469 aa11.81□□□□□ -0.52
HPS4-202ENST00000398145 HESX1Q9UBX0 185 aa11.81□□□□□ -0.52
HPS4-202ENST00000398145 IGF2BP3O00425 579 aaKnown RBP eCLIP11.8□□□□□ -0.52
HPS4-202ENST00000398145 HNRNPCL1O60812 293 aaKnown RBP11.8□□□□□ -0.52
HPS4-202ENST00000398145 TMEM253P0C7T8 217 aa11.8□□□□□ -0.52
HPS4-202ENST00000398145 RPS6KA2Q15349 733 aa11.8□□□□□ -0.52
HPS4-202ENST00000398145 LRRC34Q8IZ02 419 aa11.8□□□□□ -0.52
HPS4-202ENST00000398145 ADGRF4Q8IZF3 695 aa11.8□□□□□ -0.52
HPS4-202ENST00000398145 ERP27Q96DN0 273 aa11.8□□□□□ -0.52
HPS4-202ENST00000398145 DYDC2Q96IM9 177 aa11.8□□□□□ -0.52
HPS4-202ENST00000398145 TRPA1O75762 1119 aa11.8□□□□□ -0.52
HPS4-202ENST00000398145 ESRRGP62508 458 aa11.8□□□□□ -0.52
HPS4-202ENST00000398145 GRAPQ13588 217 aa11.8□□□□□ -0.52
HPS4-202ENST00000398145 QRICH1Q2TAL8 776 aa11.8□□□□□ -0.52
HPS4-202ENST00000398145 KCTD6Q8NC69 237 aa11.8□□□□□ -0.52
HPS4-202ENST00000398145 GRAPLQ8TC17 118 aaPredicted RBP11.8□□□□□ -0.52
HPS4-202ENST00000398145 FAM161BQ96MY7 647 aa11.8□□□□□ -0.52
HPS4-202ENST00000398145 CSRNP1Q96S65 589 aa11.8□□□□□ -0.52
HPS4-202ENST00000398145 TTC1Q99614 292 aa11.8□□□□□ -0.52
HPS4-202ENST00000398145 C11orf70Q9BRQ4 267 aa11.8□□□□□ -0.52
HPS4-202ENST00000398145 APEX2Q9UBZ4 518 aa11.8□□□□□ -0.52
HPS4-202ENST00000398145 GINS2Q9Y248 185 aa11.8□□□□□ -0.52
HPS4-202ENST00000398145 TTLL3Q9Y4R7 772 aa11.8□□□□□ -0.52
HPS4-202ENST00000398145 ALG6Q9Y672 507 aa11.8□□□□□ -0.52
HPS4-202ENST00000398145 EMSYQ7Z589 1322 aa11.8□□□□□ -0.52
HPS4-202ENST00000398145 RTN2O75298 545 aa11.8□□□□□ -0.52
HPS4-202ENST00000398145 GPC4O75487 556 aa11.8□□□□□ -0.52
HPS4-202ENST00000398145 YARSP54577 528 aaKnown RBP11.8□□□□□ -0.52
HPS4-202ENST00000398145 GPS1Q13098 491 aa11.8□□□□□ -0.52
HPS4-202ENST00000398145 MMEL1Q495T6 779 aa11.8□□□□□ -0.52
HPS4-202ENST00000398145 HP1BP3Q5SSJ5 553 aaPredicted RBP11.8□□□□□ -0.52
HPS4-202ENST00000398145 KLHDC7AQ5VTJ3 777 aa11.8□□□□□ -0.52
HPS4-202ENST00000398145 PADI6Q6TGC4 694 aa11.8□□□□□ -0.52
HPS4-202ENST00000398145 BARGINQ6ZT62 677 aa11.8□□□□□ -0.52
HPS4-202ENST00000398145 PCGF5Q86SE9 256 aa11.8□□□□□ -0.52
HPS4-202ENST00000398145 RHOT1Q8IXI2 618 aa11.8□□□□□ -0.52
HPS4-202ENST00000398145 NME8Q8N427 588 aa11.8□□□□□ -0.52
HPS4-202ENST00000398145 HIPK4Q8NE63 616 aa11.8□□□□□ -0.52
HPS4-202ENST00000398145 TPCN2Q8NHX9 752 aa11.8□□□□□ -0.52
HPS4-202ENST00000398145 SLC7A3Q8WY07 619 aa11.8□□□□□ -0.52
HPS4-202ENST00000398145 SCYL1Q96KG9 808 aa11.8□□□□□ -0.52
HPS4-202ENST00000398145 SMG5Q9UPR3 1016 aaKnown RBP11.8□□□□□ -0.52
HPS4-202ENST00000398145 NPHP3-ACAD11A0A0J9YXS1 232 aa11.8□□□□□ -0.52
HPS4-202ENST00000398145 SKOR1P84550 965 aa11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms