RNA–Protein interactions for RNA: ENST00000397906.6

TTC28-201, Transcript of tetratricopeptide repeat domain 28, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene TTC28, Length 11,795 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-201ENST00000397906 CCDC38Q502W7 563 aa12.12□□□□□ -0.47
TTC28-201ENST00000397906 STRIP1Q5VSL9 837 aa12.12□□□□□ -0.47
TTC28-201ENST00000397906 RGL1Q9NZL6 768 aa12.12□□□□□ -0.47
TTC28-201ENST00000397906 CFLARO15519 480 aa12.12□□□□□ -0.47
TTC28-201ENST00000397906 CLNS1AP54105 237 aaKnown RBP12.12□□□□□ -0.47
TTC28-201ENST00000397906 RWDD2BP57060 319 aa12.12□□□□□ -0.47
TTC28-201ENST00000397906 PSMC1P62191 440 aaKnown RBP12.12□□□□□ -0.47
TTC28-201ENST00000397906 JRKLQ9Y4A0 524 aa12.12□□□□□ -0.47
TTC28-201ENST00000397906 GGPS1O95749 300 aa12.12□□□□□ -0.47
TTC28-201ENST00000397906 GFPT1Q06210 699 aaPredicted RBP12.12□□□□□ -0.47
TTC28-201ENST00000397906 BAATQ14032 418 aaPredicted RBP12.12□□□□□ -0.47
TTC28-201ENST00000397906 RMDN1Q96DB5 314 aa12.12□□□□□ -0.47
TTC28-201ENST00000397906 YIPF2Q9BWQ6 316 aa12.12□□□□□ -0.47
TTC28-201ENST00000397906 PYCARDQ9ULZ3 195 aa12.12□□□□□ -0.47
TTC28-201ENST00000397906 CHEK2O96017 543 aa12.12□□□□□ -0.47
TTC28-201ENST00000397906 FAM102AQ5T9C2 384 aaPredicted RBP12.12□□□□□ -0.47
TTC28-201ENST00000397906 PPP1R18Q6NYC8 613 aa12.12□□□□□ -0.47
TTC28-201ENST00000397906 PBXIP1Q96AQ6 731 aa12.12□□□□□ -0.47
TTC28-201ENST00000397906 FAM20AQ96MK3 541 aa12.12□□□□□ -0.47
TTC28-201ENST00000397906 OSBPL5Q9H0X9 879 aaPredicted RBP12.12□□□□□ -0.47
TTC28-201ENST00000397906 SEC23IPQ9Y6Y8 1000 aaKnown RBP12.12□□□□□ -0.47
TTC28-201ENST00000397906 TULP4Q9NRJ4 1543 aa12.12□□□□□ -0.47
TTC28-201ENST00000397906 NDUFA10O95299 355 aa12.12□□□□□ -0.47
TTC28-201ENST00000397906 GPD1LQ8N335 351 aa12.12□□□□□ -0.47
TTC28-201ENST00000397906 MTIF3Q9H2K0 278 aaKnown RBP12.12□□□□□ -0.47
TTC28-201ENST00000397906 NDFIP2Q9NV92 336 aa12.12□□□□□ -0.47
TTC28-201ENST00000397906 GSG1L2A8MUP6 293 aa12.12□□□□□ -0.47
TTC28-201ENST00000397906 APOEP02649 317 aa12.12□□□□□ -0.47
TTC28-201ENST00000397906 AGO2Q9UKV8 859 aaKnown RBP12.12□□□□□ -0.47
TTC28-201ENST00000397906 CLTAP09496 248 aa12.12□□□□□ -0.47
TTC28-201ENST00000397906 SDC4P31431 198 aa12.12□□□□□ -0.47
TTC28-201ENST00000397906 SYCP2LQ5T4T6 812 aa12.12□□□□□ -0.47
TTC28-201ENST00000397906 TMEM35BQ8NCS4 154 aa12.12□□□□□ -0.47
TTC28-201ENST00000397906 ADGRB3O60242 1522 aa12.12□□□□□ -0.47
TTC28-201ENST00000397906 THEMIS2Q5TEJ8 643 aa12.12□□□□□ -0.47
TTC28-201ENST00000397906 COG4Q9H9E3 785 aa12.12□□□□□ -0.47
TTC28-201ENST00000397906 POLRMTO00411 1230 aaKnown RBP12.11□□□□□ -0.47
TTC28-201ENST00000397906 DEFB132Q7Z7B7 95 aa12.11□□□□□ -0.47
TTC28-201ENST00000397906 NUP85Q9BW27 656 aa12.11□□□□□ -0.47
TTC28-201ENST00000397906 STRIP2Q9ULQ0 834 aa12.11□□□□□ -0.47
TTC28-201ENST00000397906 IQSEC2Q5JU85 1478 aa12.11□□□□□ -0.47
TTC28-201ENST00000397906 NBPF26B4DH59 902 aa12.11□□□□□ -0.47
TTC28-201ENST00000397906 ATP1A3P13637 1013 aa12.11□□□□□ -0.47
TTC28-201ENST00000397906 CCDC157Q569K6 752 aa12.11□□□□□ -0.47
TTC28-201ENST00000397906 NBPF10Q6P3W6 841 aaKnown RBP12.11□□□□□ -0.47
TTC28-201ENST00000397906 NBPF15Q8N660 670 aa12.11□□□□□ -0.47
TTC28-201ENST00000397906 PPP2R3CQ969Q6 453 aa12.11□□□□□ -0.47
TTC28-201ENST00000397906 TJP2Q9UDY2 1190 aa12.11□□□□□ -0.47
TTC28-201ENST00000397906 PCDHA10Q9Y5I2 948 aa12.11□□□□□ -0.47
TTC28-201ENST00000397906 CFAP69A5D8W1 941 aa12.11□□□□□ -0.47
TTC28-201ENST00000397906 FBXL13Q8NEE6 735 aa12.11□□□□□ -0.47
TTC28-201ENST00000397906 DHX35Q9H5Z1 703 aaKnown RBP12.11□□□□□ -0.47
TTC28-201ENST00000397906 IKBKBO14920 756 aa12.11□□□□□ -0.47
TTC28-201ENST00000397906 PRPF4O43172 522 aaKnown RBP eCLIP12.11□□□□□ -0.47
TTC28-201ENST00000397906 PRKCBP05771 671 aa12.11□□□□□ -0.47
TTC28-201ENST00000397906 EFHC2Q5JST6 749 aa12.11□□□□□ -0.47
TTC28-201ENST00000397906 CENPUQ71F23 418 aa12.11□□□□□ -0.47
TTC28-201ENST00000397906 RASSF3Q86WH2 238 aa12.11□□□□□ -0.47
TTC28-201ENST00000397906 PDIK1LQ8N165 341 aa12.11□□□□□ -0.47
TTC28-201ENST00000397906 ZKSCAN4Q969J2 545 aaPredicted RBP12.11□□□□□ -0.47
TTC28-201ENST00000397906 PRR29P0C7W0 189 aa12.11□□□□□ -0.47
TTC28-201ENST00000397906 INPP1P49441 399 aa12.11□□□□□ -0.47
TTC28-201ENST00000397906 EGFL8Q99944 293 aa12.11□□□□□ -0.47
TTC28-201ENST00000397906 CLCA2Q9UQC9 943 aa12.11□□□□□ -0.47
TTC28-201ENST00000397906 SREBF2Q12772 1141 aa12.11□□□□□ -0.47
TTC28-201ENST00000397906 KNOP1Q1ED39 458 aaKnown RBP12.11□□□□□ -0.47
TTC28-201ENST00000397906 APPL2Q8NEU8 664 aa12.11□□□□□ -0.47
TTC28-201ENST00000397906 ETF1P62495 437 aaKnown RBP12.11□□□□□ -0.47
TTC28-201ENST00000397906 ZBED6P86452 979 aa12.11□□□□□ -0.47
TTC28-201ENST00000397906 POU5F1BQ06416 359 aa12.11□□□□□ -0.47
TTC28-201ENST00000397906 GOLGA8QA0A0J9YX86 632 aa12.11□□□□□ -0.47
TTC28-201ENST00000397906 CCDC195A0A1B0GUA6 201 aa12.11□□□□□ -0.47
TTC28-201ENST00000397906 GOLGA8OA6NCC3 632 aa12.11□□□□□ -0.47
TTC28-201ENST00000397906 GOLGA8NF8WBI6 632 aa12.11□□□□□ -0.47
TTC28-201ENST00000397906 TRIM49P0CI25 452 aa12.11□□□□□ -0.47
TTC28-201ENST00000397906 TRIM49CP0CI26 452 aa12.11□□□□□ -0.47
TTC28-201ENST00000397906 NCLNQ969V3 563 aa12.11□□□□□ -0.47
TTC28-201ENST00000397906 RNF25Q96BH1 459 aaPredicted RBP12.11□□□□□ -0.47
TTC28-201ENST00000397906 RRAGDQ9NQL2 400 aaPredicted RBP12.11□□□□□ -0.47
TTC28-201ENST00000397906 PCDHB7Q9Y5E2 793 aa12.11□□□□□ -0.47
TTC28-201ENST00000397906 RALAP11233 206 aa12.11□□□□□ -0.47
TTC28-201ENST00000397906 SULT1E1P49888 294 aa12.11□□□□□ -0.47
TTC28-201ENST00000397906 IMPG1Q17R60 797 aa12.11□□□□□ -0.47
TTC28-201ENST00000397906 NSUN4Q96CB9 384 aaKnown RBP12.11□□□□□ -0.47
TTC28-201ENST00000397906 ATXN7L3BQ96GX2 97 aa12.11□□□□□ -0.47
TTC28-201ENST00000397906 KATNAL1Q9BW62 490 aa12.11□□□□□ -0.47
TTC28-201ENST00000397906 EPS15L1Q9UBC2 864 aa12.11□□□□□ -0.47
TTC28-201ENST00000397906 PRCPP42785 496 aa12.1□□□□□ -0.47
TTC28-201ENST00000397906 RNF135Q8IUD6 432 aa12.1□□□□□ -0.47
TTC28-201ENST00000397906 CAPN7Q9Y6W3 813 aa12.1□□□□□ -0.47
TTC28-201ENST00000397906 LRRC53A6NM62 1247 aa12.1□□□□□ -0.47
TTC28-201ENST00000397906 SPECC1L-ADORA2AF8WAN1 911 aa12.1□□□□□ -0.47
TTC28-201ENST00000397906 RPS6KA5O75582 802 aa12.1□□□□□ -0.47
TTC28-201ENST00000397906 ASMTLO95671 621 aa12.1□□□□□ -0.47
TTC28-201ENST00000397906 CDC42EP5Q6NZY7 148 aa12.1□□□□□ -0.47
TTC28-201ENST00000397906 BCAS4Q8TDM0 211 aa12.1□□□□□ -0.47
TTC28-201ENST00000397906 ISCA1Q9BUE6 129 aa12.1□□□□□ -0.47
TTC28-201ENST00000397906 STAP1Q9ULZ2 295 aa12.1□□□□□ -0.47
TTC28-201ENST00000397906 PALMO75781 387 aa12.1□□□□□ -0.47
TTC28-201ENST00000397906 KCNH2Q12809 1159 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms