RNA–Protein interactions for RNA: ENST00000396828.8

NEDD8-202, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 626 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-202ENST00000396828 MIER3Q7Z3K6 550 aa11.58□□□□□ -0.56
NEDD8-202ENST00000396828 SLC39A11Q8N1S5 342 aa11.58□□□□□ -0.56
NEDD8-202ENST00000396828 LRRC43Q8N309 656 aa11.58□□□□□ -0.56
NEDD8-202ENST00000396828 BCL7CQ8WUZ0 217 aaPredicted RBP11.58□□□□□ -0.56
NEDD8-202ENST00000396828 NLRP7Q8WX94 980 aa11.58□□□□□ -0.56
NEDD8-202ENST00000396828 MBOAT7Q96N66 472 aa11.58□□□□□ -0.56
NEDD8-202ENST00000396828 ZNF558Q96NG5 402 aa11.58□□□□□ -0.56
NEDD8-202ENST00000396828 FDXACB1Q9BRP7 624 aaPredicted RBP11.58□□□□□ -0.56
NEDD8-202ENST00000396828 PHF7Q9BWX1 381 aaPredicted RBP11.58□□□□□ -0.56
NEDD8-202ENST00000396828 ENTPD7Q9NQZ7 604 aa11.58□□□□□ -0.56
NEDD8-202ENST00000396828 SH3GLB2Q9NR46 395 aa11.58□□□□□ -0.56
NEDD8-202ENST00000396828 WRAP73Q9P2S5 460 aaPredicted RBP11.58□□□□□ -0.56
NEDD8-202ENST00000396828 KCNJ14Q9UNX9 436 aa11.58□□□□□ -0.56
NEDD8-202ENST00000396828 LZTS1Q9Y250 596 aa11.58□□□□□ -0.56
NEDD8-202ENST00000396828 ATP6V1DQ9Y5K8 247 aa11.58□□□□□ -0.56
NEDD8-202ENST00000396828 ZDBF2Q9HCK1 2354 aa11.58□□□□□ -0.56
NEDD8-202ENST00000396828 TMEM221A6NGB7 291 aa11.57□□□□□ -0.56
NEDD8-202ENST00000396828 M0R296 226 aa11.57□□□□□ -0.56
NEDD8-202ENST00000396828 MAFO75444 373 aaPredicted RBP11.57□□□□□ -0.56
NEDD8-202ENST00000396828 BRD1O95696 1058 aa11.57□□□□□ -0.56
NEDD8-202ENST00000396828 SFNP31947 248 aa11.57□□□□□ -0.56
NEDD8-202ENST00000396828 PHKA2P46019 1235 aa11.57□□□□□ -0.56
NEDD8-202ENST00000396828 AFF1P51825 1210 aaKnown RBP11.57□□□□□ -0.56
NEDD8-202ENST00000396828 JAK3P52333 1124 aa11.57□□□□□ -0.56
NEDD8-202ENST00000396828 FOSBP53539 338 aa11.57□□□□□ -0.56
NEDD8-202ENST00000396828 SAFBQ15424 915 aaKnown RBP eCLIP11.57□□□□□ -0.56
NEDD8-202ENST00000396828 INF2Q27J81 1249 aa11.57□□□□□ -0.56
NEDD8-202ENST00000396828 FAM43BQ6ZT52 329 aaPredicted RBP11.57□□□□□ -0.56
NEDD8-202ENST00000396828 TMC7Q7Z402 723 aa11.57□□□□□ -0.56
NEDD8-202ENST00000396828 BLIDQ8IZY5 108 aa11.57□□□□□ -0.56
NEDD8-202ENST00000396828 MRPL43Q8N983 215 aaKnown RBP11.57□□□□□ -0.56
NEDD8-202ENST00000396828 PRSS33Q8NF86 280 aa11.57□□□□□ -0.56
NEDD8-202ENST00000396828 FBXO18Q8NFZ0 1043 aa11.57□□□□□ -0.56
NEDD8-202ENST00000396828 AUTS2Q8WXX7 1259 aa11.57□□□□□ -0.56
NEDD8-202ENST00000396828 SCLT1Q96NL6 688 aa11.57□□□□□ -0.56
NEDD8-202ENST00000396828 CDCA3Q99618 268 aaPredicted RBP11.57□□□□□ -0.56
NEDD8-202ENST00000396828 SPG21Q9NZD8 308 aa11.57□□□□□ -0.56
NEDD8-202ENST00000396828 MTMR6Q9Y217 621 aa11.57□□□□□ -0.56
NEDD8-202ENST00000396828 HCFC2Q9Y5Z7 792 aa11.57□□□□□ -0.56
NEDD8-202ENST00000396828 C2orf71A6NGG8 1288 aa11.56□□□□□ -0.56
NEDD8-202ENST00000396828 DDX11L8A8MPP1 907 aa11.56□□□□□ -0.56
NEDD8-202ENST00000396828 HOXA2O43364 376 aa11.56□□□□□ -0.56
NEDD8-202ENST00000396828 EOMESO95936 686 aa11.56□□□□□ -0.56
NEDD8-202ENST00000396828 WEE2P0C1S8 567 aa11.56□□□□□ -0.56
NEDD8-202ENST00000396828 MRE11P49959 708 aa11.56□□□□□ -0.56
NEDD8-202ENST00000396828 NPEPPSP55786 919 aa11.56□□□□□ -0.56
NEDD8-202ENST00000396828 BCAR1P56945 870 aa11.56□□□□□ -0.56
NEDD8-202ENST00000396828 GNL2Q13823 731 aaKnown RBP11.56□□□□□ -0.56
NEDD8-202ENST00000396828 PKP1Q13835 747 aa11.56□□□□□ -0.56
NEDD8-202ENST00000396828 XKR3Q5GH77 459 aa11.56□□□□□ -0.56
NEDD8-202ENST00000396828 EARS2Q5JPH6 523 aaKnown RBP11.56□□□□□ -0.56
NEDD8-202ENST00000396828 PDE12Q6L8Q7 609 aaKnown RBP11.56□□□□□ -0.56
NEDD8-202ENST00000396828 BMP8AQ7Z5Y6 402 aa11.56□□□□□ -0.56
NEDD8-202ENST00000396828 RHPN2Q8IUC4 686 aa11.56□□□□□ -0.56
NEDD8-202ENST00000396828 KMT2EQ8IZD2 1858 aa11.56□□□□□ -0.56
NEDD8-202ENST00000396828 ABI1Q8IZP0 508 aa11.56□□□□□ -0.56
NEDD8-202ENST00000396828 FAM177A1Q8N128 213 aaPredicted RBP11.56□□□□□ -0.56
NEDD8-202ENST00000396828 C12orf76Q8N812 135 aaPredicted RBP11.56□□□□□ -0.56
NEDD8-202ENST00000396828 DAGLBQ8NCG7 672 aa11.56□□□□□ -0.56
NEDD8-202ENST00000396828 OXER1Q8TDS5 423 aa11.56□□□□□ -0.56
NEDD8-202ENST00000396828 PBXIP1Q96AQ6 731 aa11.56□□□□□ -0.56
NEDD8-202ENST00000396828 MFSD14AQ96MC6 490 aa11.56□□□□□ -0.56
NEDD8-202ENST00000396828 VN1R3Q9BXE9 311 aa11.56□□□□□ -0.56
NEDD8-202ENST00000396828 SMOC2Q9H3U7 446 aa11.56□□□□□ -0.56
NEDD8-202ENST00000396828 BRMS1Q9HCU9 246 aa11.56□□□□□ -0.56
NEDD8-202ENST00000396828 NGRNQ9NPE2 291 aaKnown RBP11.56□□□□□ -0.56
NEDD8-202ENST00000396828 SUCLA2Q9P2R7 463 aaPredicted RBP11.56□□□□□ -0.56
NEDD8-202ENST00000396828 PUF60Q9UHX1 559 aaKnown RBP11.56□□□□□ -0.56
NEDD8-202ENST00000396828 VAV3Q9UKW4 847 aa11.56□□□□□ -0.56
NEDD8-202ENST00000396828 MYO10Q9HD67 2058 aa11.56□□□□□ -0.56
NEDD8-202ENST00000396828 FAM205CA6NFA0 338 aa11.55□□□□□ -0.56
NEDD8-202ENST00000396828 ZBTB39O15060 712 aa11.55□□□□□ -0.56
NEDD8-202ENST00000396828 CLASP2O75122 1294 aaKnown RBP11.55□□□□□ -0.56
NEDD8-202ENST00000396828 ZC3H11AO75152 810 aaKnown RBP eCLIP11.55□□□□□ -0.56
NEDD8-202ENST00000396828 F13A1P00488 732 aa11.55□□□□□ -0.56
NEDD8-202ENST00000396828 PDGFBP01127 241 aaPredicted RBP11.55□□□□□ -0.56
NEDD8-202ENST00000396828 VCPP55072 806 aaKnown RBP11.55□□□□□ -0.56
NEDD8-202ENST00000396828 KRT17Q04695 432 aa11.55□□□□□ -0.56
NEDD8-202ENST00000396828 LETM2Q2VYF4 491 aa11.55□□□□□ -0.56
NEDD8-202ENST00000396828 FOXD4L5Q5VV16 416 aaPredicted RBP11.55□□□□□ -0.56
NEDD8-202ENST00000396828 MCTP1Q6DN14 999 aa11.55□□□□□ -0.56
NEDD8-202ENST00000396828 RDM1Q8NG50 284 aa11.55□□□□□ -0.56
NEDD8-202ENST00000396828 FOXD4L4Q8WXT5 416 aaPredicted RBP11.55□□□□□ -0.56
NEDD8-202ENST00000396828 HAS1Q92839 578 aa11.55□□□□□ -0.56
NEDD8-202ENST00000396828 ASIC4Q96FT7 647 aa11.55□□□□□ -0.56
NEDD8-202ENST00000396828 NLRP4Q96MN2 994 aa11.55□□□□□ -0.56
NEDD8-202ENST00000396828 GCOM2Q9BZD3 368 aaPredicted RBP11.55□□□□□ -0.56
NEDD8-202ENST00000396828 ZSCAN16Q9H4T2 348 aaPredicted RBP11.55□□□□□ -0.56
NEDD8-202ENST00000396828 NRDE2Q9H7Z3 1164 aa11.55□□□□□ -0.56
NEDD8-202ENST00000396828 MINDY3Q9H8M7 445 aa11.55□□□□□ -0.56
NEDD8-202ENST00000396828 IFT122Q9HBG6 1241 aa11.55□□□□□ -0.56
NEDD8-202ENST00000396828 KCNMB3Q9NPA1 279 aa11.55□□□□□ -0.56
NEDD8-202ENST00000396828 BMP2KQ9NSY1 1161 aaPredicted RBP11.55□□□□□ -0.56
NEDD8-202ENST00000396828 TBC1D13Q9NVG8 400 aa11.55□□□□□ -0.56
NEDD8-202ENST00000396828 DNAJB4Q9UDY4 337 aa11.55□□□□□ -0.56
NEDD8-202ENST00000396828 DDX25Q9UHL0 483 aaKnown RBP11.55□□□□□ -0.56
NEDD8-202ENST00000396828 PIN4Q9Y237 131 aaKnown RBP11.55□□□□□ -0.56
NEDD8-202ENST00000396828 OFD1O75665 1012 aa11.54□□□□□ -0.56
NEDD8-202ENST00000396828 CXCL14O95715 111 aa11.54□□□□□ -0.56
NEDD8-202ENST00000396828 EPCAMP16422 314 aa11.54□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms